CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 62 | Q62X | nonsyn | Caa | Taa | 38426 | 38420 | 0.999844 | 27577-27579 | |
ORF7a | 62 | Q62X | nonsyn | CaA | TaG | 38426 | 4 | 0.000104096 | 27577-27579 | |
ORF7a | 62 | Q62X | nonsyn | CAa | TGa | 38426 | 2 | 0.0000520481 | 27577-27579 |
Details of the mutation Q62X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 62 | Q62X | Caa | Taa | 38420 | 38426 | All | 0.007348 |
ORF7a | 62 | Q62X | CaA | TaG | 4 | 38426 | All | 0.000001 |
ORF7a | 62 | Q62X | CAa | TGa | 2 | 38426 | All | 0 |
ORF7a | 62 | Q62X | Caa | Taa | 30723 | 30723 | B.1.1.7 | 0.027504 |
ORF7a | 62 | Q62X | Caa | Taa | 1248 | 1248 | AY.4 | 0.001942 |
ORF7a | 62 | Q62X | Caa | Taa | 849 | 850 | AY.25 | 0.005107 |
ORF7a | 62 | Q62X | CaA | TaG | 1 | 850 | AY.25 | 0.000006 |
ORF7a | 62 | Q62X | Caa | Taa | 797 | 798 | B.1.617.2 | 0.003001 |
ORF7a | 62 | Q62X | CAa | TGa | 1 | 798 | B.1.617.2 | 0.000004 |
ORF7a | 62 | Q62X | Caa | Taa | 607 | 607 | AY.100 | 0.027926 |
ORF7a | 62 | Q62X | Caa | Taa | 422 | 422 | AY.39.1 | 0.016717 |
ORF7a | 62 | Q62X | Caa | Taa | 327 | 327 | AY.44 | 0.00199 |
ORF7a | 62 | Q62X | Caa | Taa | 260 | 260 | AY.43 | 0.001152 |
ORF7a | 62 | Q62X | Caa | Taa | 246 | 246 | Q.8 | 0.040567 |
ORF7a | 62 | Q62X | Caa | Taa | 234 | 234 | AY.120 | 0.0087 |
ORF7a | 62 | Q62X | Caa | Taa | 221 | 221 | AY.103 | 0.001372 |
ORF7a | 62 | Q62X | Caa | Taa | 103 | 103 | B.1.1 | 0.001869 |
ORF7a | 62 | Q62X | Caa | Taa | 100 | 100 | B.1.2 | 0.000881 |
ORF7a | 62 | Q62X | Caa | Taa | 91 | 91 | B.1.526 | 0.002139 |
ORF7a | 62 | Q62X | Caa | Taa | 83 | 83 | Q.1 | 0.010485 |
ORF7a | 62 | Q62X | Caa | Taa | 70 | 70 | AY.3 | 0.000696 |
ORF7a | 62 | Q62X | Caa | Taa | 69 | 69 | B.1.351 | 0.002051 |
ORF7a | 62 | Q62X | Caa | Taa | 66 | 66 | AY.4.2 | 0.001431 |
ORF7a | 62 | Q62X | Caa | Taa | 66 | 66 | B.1 | 0.000605 |
ORF7a | 62 | Q62X | Caa | Taa | 58 | 58 | B.1.177 | 0.000764 |
ORF7a | 62 | Q62X | Caa | Taa | 57 | 57 | B.1.36.2 | 0.612903 |
ORF7a | 62 | Q62X | Caa | Taa | 55 | 55 | AY.9 | 0.003718 |
ORF7a | 62 | Q62X | Caa | Taa | 53 | 53 | P.1 | 0.000835 |
ORF7a | 62 | Q62X | Caa | Taa | 50 | 50 | AY.34 | 0.004848 |
ORF7a | 62 | Q62X | Caa | Taa | 47 | 47 | B.1.525 | 0.005319 |
ORF7a | 62 | Q62X | Caa | Taa | 46 | 46 | AY.29 | 0.000726 |
ORF7a | 62 | Q62X | Caa | Taa | 45 | 45 | AY.102 | 0.001193 |
ORF7a | 62 | Q62X | Caa | Taa | 43 | 43 | AY.45 | 0.005232 |
ORF7a | 62 | Q62X | Caa | Taa | 39 | 39 | AY.13 | 0.006278 |
ORF7a | 62 | Q62X | Caa | Taa | 38 | 38 | AY.92 | 0.010916 |
ORF7a | 62 | Q62X | Caa | Taa | 35 | 35 | AY.39 | 0.000865 |
ORF7a | 62 | Q62X | Caa | Taa | 34 | 34 | AY.118 | 0.00213 |
ORF7a | 62 | Q62X | Caa | Taa | 34 | 34 | B.1.429 | 0.0008 |
ORF7a | 62 | Q62X | Caa | Taa | 34 | 34 | C.37 | 0.003946 |
ORF7a | 62 | Q62X | Caa | Taa | 30 | 30 | AY.36 | 0.004446 |
ORF7a | 62 | Q62X | Caa | Taa | 30 | 30 | AY.5 | 0.000619 |
ORF7a | 62 | Q62X | Caa | Taa | 27 | 27 | AY.20 | 0.001049 |
ORF7a | 62 | Q62X | Caa | Taa | 26 | 26 | AY.26 | 0.000736 |
ORF7a | 62 | Q62X | Caa | Taa | 24 | 24 | AY.119 | 0.000847 |
ORF7a | 62 | Q62X | Caa | Taa | 24 | 24 | AY.33 | 0.001603 |
ORF7a | 62 | Q62X | Caa | Taa | 23 | 23 | AY.6 | 0.000946 |
ORF7a | 62 | Q62X | Caa | Taa | 23 | 23 | B.1.160 | 0.000717 |
ORF7a | 62 | Q62X | Caa | Taa | 21 | 21 | AY.47 | 0.000653 |
ORF7a | 62 | Q62X | Caa | Taa | 21 | 21 | AY.61 | 0.0022 |
ORF7a | 62 | Q62X | Caa | Taa | 21 | 21 | B.1.596 | 0.00183 |
ORF7a | 62 | Q62X | Caa | Taa | 19 | 19 | AY.117 | 0.001606 |
ORF7a | 62 | Q62X | Caa | Taa | 19 | 19 | P.1.14 | 0.000908 |
ORF7a | 62 | Q62X | Caa | Taa | 18 | 18 | B.1.1.519 | 0.000715 |
ORF7a | 62 | Q62X | Caa | Taa | 15 | 15 | AY.107 | 0.00699 |
ORF7a | 62 | Q62X | Caa | Taa | 15 | 15 | B.1.1.33 | 0.006313 |
ORF7a | 62 | Q62X | Caa | Taa | 14 | 14 | AY.75 | 0.000784 |
ORF7a | 62 | Q62X | Caa | Taa | 14 | 14 | AY.9.1 | 0.001172 |
ORF7a | 62 | Q62X | Caa | Taa | 14 | 14 | B.1.243 | 0.000974 |
ORF7a | 62 | Q62X | Caa | Taa | 13 | 13 | AY.42 | 0.000523 |
ORF7a | 62 | Q62X | Caa | Taa | 13 | 13 | B.1.621 | 0.001151 |
ORF7a | 62 | Q62X | Caa | Taa | 12 | 12 | AY.9.2 | 0.000441 |
ORF7a | 62 | Q62X | Caa | Taa | 12 | 12 | B.1.221 | 0.000852 |
ORF7a | 62 | Q62X | Caa | Taa | 12 | 12 | B.1.229 | 0.116505 |
ORF7a | 62 | Q62X | Caa | Taa | 12 | 12 | P.1.7 | 0.003831 |
ORF7a | 62 | Q62X | Caa | Taa | 12 | 12 | P.4 | 0.045627 |
ORF7a | 62 | Q62X | Caa | Taa | 11 | 11 | AY.4.2.1 | 0.001639 |
ORF7a | 62 | Q62X | Caa | Taa | 11 | 11 | AY.46 | 0.001145 |
ORF7a | 62 | Q62X | Caa | Taa | 11 | 11 | B.1.1.351 | 0.030726 |
ORF7a | 62 | Q62X | Caa | Taa | 11 | 11 | B.1.258 | 0.000732 |
ORF7a | 62 | Q62X | Caa | Taa | 11 | 11 | B.1.401 | 0.090164 |
ORF7a | 62 | Q62X | Caa | Taa | 10 | 10 | AY.120.2.1 | 0.004983 |
ORF7a | 62 | Q62X | Caa | Taa | 10 | 10 | AY.4.5 | 0.001075 |
ORF7a | 62 | Q62X | Caa | Taa | 10 | 10 | AY.57 | 0.006562 |
ORF7a | 62 | Q62X | Caa | Taa | 10 | 10 | AY.99.2 | 0.000922 |
ORF7a | 62 | Q62X | Caa | Taa | 10 | 10 | P.1.13 | 0.008985 |
ORF7a | 62 | Q62X | Caa | Taa | 10 | 10 | P.1.17 | 0.001618 |
ORF7a | 62 | Q62X | Caa | Taa | 9 | 9 | AY.46.6 | 0.00065 |
ORF7a | 62 | Q62X | Caa | Taa | 9 | 9 | AY.75.1 | 0.001623 |
ORF7a | 62 | Q62X | Caa | Taa | 9 | 9 | B.1.1.214 | 0.000499 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | AY.110 | 0.000902 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | AY.14 | 0.000704 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | AY.3.1 | 0.000682 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | AY.54 | 0.000763 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | AY.69 | 0.001493 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | AY.95 | 0.006088 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | B.1.177.12 | 0.001214 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | B.1.575 | 0.002427 |
ORF7a | 62 | Q62X | Caa | Taa | 8 | 8 | B.1.582 | 0.003925 |
ORF7a | 62 | Q62X | Caa | Taa | 7 | 7 | AY.35 | 0.001631 |
ORF7a | 62 | Q62X | Caa | Taa | 7 | 7 | AY.98 | 0.000553 |
ORF7a | 62 | Q62X | Caa | Taa | 7 | 7 | AY.98.1 | 0.000339 |
ORF7a | 62 | Q62X | Caa | Taa | 7 | 7 | B.1.258.17 | 0.000728 |
ORF7a | 62 | Q62X | Caa | Taa | 7 | 7 | B.1.427 | 0.000353 |
ORF7a | 62 | Q62X | Caa | Taa | 7 | 7 | B.1.617.1 | 0.000903 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | AY.113 | 0.000854 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | AY.27 | 0.000388 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | AY.46.4 | 0.000987 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | AY.48 | 0.002791 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | AY.5.3 | 0.002024 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | B.1.177.21 | 0.000459 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | B.1.177.60 | 0.001311 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | B.1.177.7 | 0.000989 |
ORF7a | 62 | Q62X | Caa | Taa | 6 | 6 | B.1.391 | 0.006764 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | A.2.5 | 0.002495 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | AY.101 | 0.002452 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | AY.116.1 | 0.001557 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | AY.23 | 0.000349 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | AY.37 | 0.00158 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | AY.76 | 0.024155 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | B.1.1.220 | 0.009294 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | B.1.1.243 | 0.020408 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | B.1.1.50 | 0.003394 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | B.1.595 | 0.001305 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | B.1.637 | 0.000365 |
ORF7a | 62 | Q62X | Caa | Taa | 5 | 5 | B.3 | 0.004153 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | AA.2 | 0.030769 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | AY.111 | 0.000733 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 4 | AY.114 | 0.000693 |
ORF7a | 62 | Q62X | CaA | TaG | 1 | 4 | AY.114 | 0.000231 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | AY.12 | 0.001264 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | AY.19 | 0.004561 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | AY.32 | 0.00213 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | AY.53 | 0.00115 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | AY.84 | 0.00175 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | AY.85 | 0.001709 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | B.1.1.170 | 0.004988 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | B.1.389 | 0.004008 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | B.1.438.1 | 0.000429 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | B.1.620 | 0.003784 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 4 | B.1.628 | 0.001057 |
ORF7a | 62 | Q62X | CAa | TGa | 1 | 4 | B.1.628 | 0.000352 |
ORF7a | 62 | Q62X | Caa | Taa | 4 | 4 | D.2 | 0.0003 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | A.1 | 0.000846 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | AY.121 | 0.000406 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | AY.29.1 | 0.000662 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | AY.4.4 | 0.001227 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | AY.46.1 | 0.00308 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | AY.62 | 0.001307 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | AY.67 | 0.001393 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | AY.73 | 0.001996 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.1.1.192 | 0.006928 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.1.1.269 | 0.00406 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.1.1.28 | 0.000934 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.1.1.301 | 0.003538 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.1.177.81 | 0.000568 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.1.375 | 0.002459 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.1.509 | 0.002597 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.1.551 | 0.003871 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | B.6.6 | 0.002667 |
ORF7a | 62 | Q62X | Caa | Taa | 3 | 3 | P.1.12 | 0.001452 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | A | 0.000774 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | A.2.5.2 | 0.003145 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.106 | 0.00067 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.120.1 | 0.000642 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.16 | 0.000759 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.16.1 | 0.00094 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.30 | 0.000791 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.34.1 | 0.00102 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.46.2 | 0.001271 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.64 | 0.00119 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.7.1 | 0.000225 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | AY.74 | 0.000231 |
ORF7a | 62 | Q62X | CaA | TaG | 2 | 2 | AY.82 | 0.002714 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.168 | 0.052632 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.208 | 0.02439 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.25 | 0.001137 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.263 | 0.003115 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.370 | 0.025316 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.401 | 0.133333 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.521 | 0.010695 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.177.16 | 0.001329 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.177.56 | 0.001335 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.177.57 | 0.000562 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.206 | 0.001631 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.234 | 0.000264 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.311 | 0.000549 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.36.31 | 0.003503 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.381 | 0.015625 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.497 | 0.00063 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.561 | 0.000794 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.619 | 0.001742 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | P.1.15 | 0.000465 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | P.1.4 | 0.001953 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | P.2 | 0.000373 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | Q.3 | 0.00029 |
ORF7a | 62 | Q62X | Caa | Taa | 2 | 2 | U.3 | 0.007722 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AE.8 | 0.000489 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.10 | 0.00053 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.104 | 0.001984 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.120.2 | 0.001285 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.15 | 0.002222 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.23.1 | 0.000417 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.41 | 0.000294 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.49 | 0.003195 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.56 | 0.001605 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.58 | 0.000907 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.63 | 0.000387 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.78 | 0.001541 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.81 | 0.001992 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.96 | 0.002075 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | AZ.2.1 | 0.00813 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B | 0.000128 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.101 | 0.01 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.221 | 0.010101 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.241 | 0.00207 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.303 | 0.002762 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.312 | 0.001912 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.368 | 0.003086 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.373 | 0.02381 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.391 | 0.008547 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.4 | 0.002976 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.41 | 0.006329 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.44 | 0.00241 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.517 | 0.006803 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.104 | 0.00369 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.147 | 0.000756 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.160.15 | 0.00495 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.166 | 0.008475 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.42 | 0.000894 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.65 | 0.000665 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.74 | 0.015152 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.79 | 0.002342 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.8 | 0.000752 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.177.87 | 0.000728 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.198 | 0.071429 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.210 | 0.002132 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.260 | 0.003344 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.313 | 0.006579 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.346 | 0.001311 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.349 | 0.000715 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.362 | 0.001541 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.400.1 | 0.015152 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.429.1 | 0.012048 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.443 | 0.004673 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.456 | 0.003268 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.466 | 0.023256 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.524 | 0.001406 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.533 | 0.009615 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.563 | 0.016949 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.564 | 0.000426 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.571 | 0.009709 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.580 | 0.004065 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.585 | 0.027778 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.588 | 0.00091 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | B.40 | 0.000364 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | C.11 | 0.010638 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | C.13 | 0.025641 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | C.32 | 0.023256 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | C.35 | 0.000774 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | C.36 | 0.000911 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | N.9 | 0.005952 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | P.1.2 | 0.001156 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | Q.6 | 0.006623 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | R.1 | 0.00009 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | U.1 | 0.012821 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | V.1 | 0.022727 |
ORF7a | 62 | Q62X | Caa | Taa | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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