CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = P84del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a84P84del1delCct-ct48350.72916727643-27645
ORF7a84P84del1delccTcc-4870.14583327643-27645
ORF7a84P84del1delCCT-NN4850.10416727643-27645
ORF7a84P84del1delCcT-cN4810.020833327643-27645

Details of the mutation P84del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a84P84del1Cct-ct3548All0.000007
ORF7a84P84del1ccTcc-748All0.000001
ORF7a84P84del1CCT-NN548All0.000001
ORF7a84P84del1CcT-cN148All0
ORF7a84P84del1Cct-ct55AY.1100.000563
ORF7a84P84del1Cct-ct44AY.1030.000025
ORF7a84P84del1ccTcc-44AY.250.000024
ORF7a84P84del1CCT-NN44AY.260.000113
ORF7a84P84del1Cct-ct44AY.99.20.000369
ORF7a84P84del1ccTcc-33AY.330.0002
ORF7a84P84del1Cct-ct33AY.390.000074
ORF7a84P84del1Cct-ct33AY.40.000005
ORF7a84P84del1Cct-ct33B.1.1.70.000003
ORF7a84P84del1Cct-ct22AY.200.000078
ORF7a84P84del1Cct-ct12AY.430.000004
ORF7a84P84del1CcT-cN12AY.430.000004
ORF7a84P84del1Cct-ct22B.1.1.1700.002494
ORF7a84P84del1CCT-NN11AY.1190.000035
ORF7a84P84del1Cct-ct11AY.120.000316
ORF7a84P84del1Cct-ct11AY.190.00114
ORF7a84P84del1Cct-ct11AY.30.00001
ORF7a84P84del1Cct-ct11AY.420.00004
ORF7a84P84del1Cct-ct11AY.450.000122
ORF7a84P84del1Cct-ct11AY.920.000287
ORF7a84P84del1Cct-ct11B.1.1.10.000327
ORF7a84P84del1Cct-ct11B.1.617.20.000004