CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = P68P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a68P68PsynccTccC15039880.65735227595-27597
ORF7a68P68PsynccTccA15034220.28077227595-27597
ORF7a68P68PsynccTccG1503930.061876227595-27597

Details of the mutation P68P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a68P68PccTccC9881503All0.000189
ORF7a68P68PccTccA4221503All0.000081
ORF7a68P68PccTccG931503All0.000018
ORF7a68P68PccTccC405424B.1.1.70.000363
ORF7a68P68PccTccA13424B.1.1.70.000012
ORF7a68P68PccTccG6424B.1.1.70.000005
ORF7a68P68PccTccA216216B.1.1.3180.065178
ORF7a68P68PccTccC163164AY.440.000992
ORF7a68P68PccTccA1164AY.440.000006
ORF7a68P68PccTccA153158AY.250.00092
ORF7a68P68PccTccC5158AY.250.00003
ORF7a68P68PccTccC104110B.1.10.001887
ORF7a68P68PccTccG4110B.1.10.000073
ORF7a68P68PccTccA2110B.1.10.000036
ORF7a68P68PccTccC7070B.1.1.2510.555556
ORF7a68P68PccTccC4252AY.40.000065
ORF7a68P68PccTccG652AY.40.000009
ORF7a68P68PccTccA452AY.40.000006
ORF7a68P68PccTccC4048B.1.617.20.000151
ORF7a68P68PccTccA648B.1.617.20.000023
ORF7a68P68PccTccG248B.1.617.20.000008
ORF7a68P68PccTccG3139AY.430.000137
ORF7a68P68PccTccA539AY.430.000022
ORF7a68P68PccTccC339AY.430.000013
ORF7a68P68PccTccG1119AY.50.000227
ORF7a68P68PccTccC819AY.50.000165
ORF7a68P68PccTccG1919AY.9.20.000698
ORF7a68P68PccTccC1818AY.1190.000636
ORF7a68P68PccTccC1516B.1.1.2220.00306
ORF7a68P68PccTccA116B.1.1.2220.000204
ORF7a68P68PccTccC1616B.1.1.2610.137931
ORF7a68P68PccTccC1114B.10.000101
ORF7a68P68PccTccA314B.10.000027
ORF7a68P68PccTccC99AY.1150.046875
ORF7a68P68PccTccG69B.1.20.000053
ORF7a68P68PccTccA29B.1.20.000018
ORF7a68P68PccTccC19B.1.20.000009
ORF7a68P68PccTccC77AY.30.00007
ORF7a68P68PccTccC66AY.1000.000276
ORF7a68P68PccTccC46AY.1200.000149
ORF7a68P68PccTccG26AY.1200.000074
ORF7a68P68PccTccC55B.1.1770.000066
ORF7a68P68PccTccG35P.10.000047
ORF7a68P68PccTccA15P.10.000016
ORF7a68P68PccTccC15P.10.000016
ORF7a68P68PccTccC44AY.1160.001147
ORF7a68P68PccTccC44B.1.2400.000862
ORF7a68P68PccTccC33AY.200.000117
ORF7a68P68PccTccC33B.1.466.20.001174
ORF7a68P68PccTccA12AY.1020.000027
ORF7a68P68PccTccC12AY.1020.000027
ORF7a68P68PccTccA12AY.1030.000006
ORF7a68P68PccTccC12AY.1030.000006
ORF7a68P68PccTccC22AY.390.000049
ORF7a68P68PccTccC12AY.4.2.10.000149
ORF7a68P68PccTccA12AY.4.2.10.000149
ORF7a68P68PccTccC22AY.450.000243
ORF7a68P68PccTccC22AY.470.000062
ORF7a68P68PccTccC22AY.610.00021
ORF7a68P68PccTccC22AY.750.000112
ORF7a68P68PccTccA12B.1.1.2140.000055
ORF7a68P68PccTccC12B.1.1.2140.000055
ORF7a68P68PccTccA22B.1.221.10.005814
ORF7a68P68PccTccC22Q.80.00033
ORF7a68P68PccTccC110.055556
ORF7a68P68PccTccC11A.10.000282
ORF7a68P68PccTccC11A.2.20.001689
ORF7a68P68PccTccC11AY.230.00007
ORF7a68P68PccTccC11AY.23.10.000417
ORF7a68P68PccTccC11AY.260.000028
ORF7a68P68PccTccC11AY.270.000065
ORF7a68P68PccTccG11AY.290.000016
ORF7a68P68PccTccC11AY.330.000067
ORF7a68P68PccTccC11AY.4.50.000107
ORF7a68P68PccTccC11AY.420.00004
ORF7a68P68PccTccC11AY.46.20.000635
ORF7a68P68PccTccG11AY.670.000464
ORF7a68P68PccTccA11AY.720.001361
ORF7a68P68PccTccA11AY.75.10.00018
ORF7a68P68PccTccC11AY.980.000079
ORF7a68P68PccTccC11B.1.1.1350.004695
ORF7a68P68PccTccC11B.1.1.4200.001006
ORF7a68P68PccTccA11B.1.177.210.000076
ORF7a68P68PccTccC11B.1.177.510.004566
ORF7a68P68PccTccC11B.1.177.790.002342
ORF7a68P68PccTccA11B.1.2210.000071
ORF7a68P68PccTccC11B.1.258.140.00098
ORF7a68P68PccTccA11B.1.258.170.000104
ORF7a68P68PccTccC11B.1.3200.001245
ORF7a68P68PccTccA11B.1.3510.00003
ORF7a68P68PccTccA11B.1.416.10.001563
ORF7a68P68PccTccA11B.1.4270.00005
ORF7a68P68PccTccC11B.1.4290.000024
ORF7a68P68PccTccG11B.1.4970.000315
ORF7a68P68PccTccA11B.1.5510.00129
ORF7a68P68PccTccC11B.1.5740.002151
ORF7a68P68PccTccC11B.1.5820.000491
ORF7a68P68PccTccC11B.1.5950.000261
ORF7a68P68PccTccC11C.160.00106
ORF7a68P68PccTccC11C.370.000116
ORF7a68P68PccTccC11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.