CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 45 | P45del | del | CCA | --- | 3002 | 3002 | 1 | 27526-27528 |
Details of the mutation P45del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 45 | P45del | CCA | --- | 3002 | 3002 | All | 0.000574 |
ORF7a | 45 | P45del | CCA | --- | 498 | 498 | AY.25 | 0.002995 |
ORF7a | 45 | P45del | CCA | --- | 438 | 438 | B.1.1.7 | 0.000392 |
ORF7a | 45 | P45del | CCA | --- | 290 | 290 | B.1.617.2 | 0.001092 |
ORF7a | 45 | P45del | CCA | --- | 265 | 265 | AY.4 | 0.000412 |
ORF7a | 45 | P45del | CCA | --- | 182 | 182 | B.1.177.21 | 0.013918 |
ORF7a | 45 | P45del | CCA | --- | 102 | 102 | AY.3 | 0.001015 |
ORF7a | 45 | P45del | CCA | --- | 98 | 98 | AY.103 | 0.000608 |
ORF7a | 45 | P45del | CCA | --- | 80 | 80 | AY.43 | 0.000354 |
ORF7a | 45 | P45del | CCA | --- | 68 | 68 | AY.39 | 0.00168 |
ORF7a | 45 | P45del | CCA | --- | 66 | 66 | AY.44 | 0.000402 |
ORF7a | 45 | P45del | CCA | --- | 63 | 63 | AY.100 | 0.002898 |
ORF7a | 45 | P45del | CCA | --- | 58 | 58 | AY.39.1 | 0.002298 |
ORF7a | 45 | P45del | CCA | --- | 57 | 57 | AY.29 | 0.000899 |
ORF7a | 45 | P45del | CCA | --- | 41 | 41 | AY.3.1 | 0.003496 |
ORF7a | 45 | P45del | CCA | --- | 37 | 37 | B.1.1.284 | 0.003974 |
ORF7a | 45 | P45del | CCA | --- | 37 | 37 | B.1.621 | 0.003275 |
ORF7a | 45 | P45del | CCA | --- | 34 | 34 | B.1 | 0.000311 |
ORF7a | 45 | P45del | CCA | --- | 30 | 30 | AY.102 | 0.000795 |
ORF7a | 45 | P45del | CCA | --- | 26 | 26 | AY.119 | 0.000918 |
ORF7a | 45 | P45del | CCA | --- | 23 | 23 | B.1.1.214 | 0.001276 |
ORF7a | 45 | P45del | CCA | --- | 19 | 19 | AY.42 | 0.000764 |
ORF7a | 45 | P45del | CCA | --- | 19 | 19 | AY.46.4 | 0.003126 |
ORF7a | 45 | P45del | CCA | --- | 19 | 19 | AY.7.2 | 0.010626 |
ORF7a | 45 | P45del | CCA | --- | 18 | 18 | AY.98.1 | 0.000872 |
ORF7a | 45 | P45del | CCA | --- | 18 | 18 | B.1.177 | 0.000237 |
ORF7a | 45 | P45del | CCA | --- | 14 | 14 | AY.47 | 0.000435 |
ORF7a | 45 | P45del | CCA | --- | 14 | 14 | B.1.637 | 0.001023 |
ORF7a | 45 | P45del | CCA | --- | 14 | 14 | P.1 | 0.000221 |
ORF7a | 45 | P45del | CCA | --- | 13 | 13 | C.37 | 0.001509 |
ORF7a | 45 | P45del | CCA | --- | 12 | 12 | B.1.2 | 0.000106 |
ORF7a | 45 | P45del | CCA | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 45 | P45del | CCA | --- | 12 | 12 | B.1.526 | 0.000282 |
ORF7a | 45 | P45del | CCA | --- | 11 | 11 | AY.26 | 0.000311 |
ORF7a | 45 | P45del | CCA | --- | 10 | 10 | AY.20 | 0.000389 |
ORF7a | 45 | P45del | CCA | --- | 10 | 10 | AY.23 | 0.000697 |
ORF7a | 45 | P45del | CCA | --- | 10 | 10 | AY.5 | 0.000206 |
ORF7a | 45 | P45del | CCA | --- | 9 | 9 | AY.34 | 0.000873 |
ORF7a | 45 | P45del | CCA | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 45 | P45del | CCA | --- | 9 | 9 | R.1 | 0.00081 |
ORF7a | 45 | P45del | CCA | --- | 8 | 8 | AY.75 | 0.000448 |
ORF7a | 45 | P45del | CCA | --- | 7 | 7 | AY.120 | 0.00026 |
ORF7a | 45 | P45del | CCA | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF7a | 45 | P45del | CCA | --- | 7 | 7 | B.1.160 | 0.000218 |
ORF7a | 45 | P45del | CCA | --- | 7 | 7 | B.1.429 | 0.000165 |
ORF7a | 45 | P45del | CCA | --- | 7 | 7 | B.1.525 | 0.000792 |
ORF7a | 45 | P45del | CCA | --- | 7 | 7 | P.1.15 | 0.001626 |
ORF7a | 45 | P45del | CCA | --- | 6 | 6 | AY.120.1 | 0.001926 |
ORF7a | 45 | P45del | CCA | --- | 6 | 6 | AY.54 | 0.000572 |
ORF7a | 45 | P45del | CCA | --- | 6 | 6 | B.1.351 | 0.000178 |
ORF7a | 45 | P45del | CCA | --- | 5 | 5 | AY.4.2 | 0.000108 |
ORF7a | 45 | P45del | CCA | --- | 5 | 5 | AY.92 | 0.001436 |
ORF7a | 45 | P45del | CCA | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 45 | P45del | CCA | --- | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 45 | P45del | CCA | --- | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 45 | P45del | CCA | --- | 4 | 4 | AY.40 | 0.003857 |
ORF7a | 45 | P45del | CCA | --- | 4 | 4 | AY.9.2 | 0.000147 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.29.1 | 0.000662 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.35 | 0.000699 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.45 | 0.000365 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.46.5 | 0.000595 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.61 | 0.000314 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.88 | 0.002653 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | AY.98 | 0.000237 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 45 | P45del | CCA | --- | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | A | 0.000774 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.110 | 0.000225 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.4.3 | 0.001684 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.53 | 0.000575 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.7.1 | 0.000225 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.1.121 | 0.004854 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.214.2 | 0.001199 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF7a | 45 | P45del | CCA | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.80 | 0.001129 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B | 0.000128 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.1.304 | 0.002809 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.1.522 | 0.017241 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.636 | 0.006711 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | B.55 | 0.00295 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | K.3 | 0.006173 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 45 | P45del | CCA | --- | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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