CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = N52del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a52N52del1delaaCaa-85560.65882427547-27549
ORF7a52N52del1delAac-ac85280.32941227547-27549
ORF7a52N52del1delAAC-NN8510.011764727547-27549

Details of the mutation N52del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a52N52del1aaCaa-5685All0.000011
ORF7a52N52del1Aac-ac2885All0.000005
ORF7a52N52del1AAC-NN185All0
ORF7a52N52del1aaCaa-810AY.40.000012
ORF7a52N52del1Aac-ac210AY.40.000003
ORF7a52N52del1aaCaa-810B.1.1.70.000007
ORF7a52N52del1Aac-ac210B.1.1.70.000002
ORF7a52N52del1aaCaa-88AY.1030.00005
ORF7a52N52del1Aac-ac88AY.350.001864
ORF7a52N52del1Aac-ac78P.10.00011
ORF7a52N52del1aaCaa-18P.10.000016
ORF7a52N52del1aaCaa-46AY.250.000024
ORF7a52N52del1Aac-ac26AY.250.000012
ORF7a52N52del1aaCaa-55B.1.617.20.000019
ORF7a52N52del1Aac-ac24B.1.20.000018
ORF7a52N52del1AAC-NN14B.1.20.000009
ORF7a52N52del1aaCaa-14B.1.20.000009
ORF7a52N52del1Aac-ac23AY.260.000057
ORF7a52N52del1aaCaa-13AY.260.000028
ORF7a52N52del1aaCaa-33AY.440.000018
ORF7a52N52del1aaCaa-33AY.900.002053
ORF7a52N52del1aaCaa-22AY.1090.001479
ORF7a52N52del1aaCaa-22AY.30.00002
ORF7a52N52del1aaCaa-11A0.000387
ORF7a52N52del1aaCaa-11AY.1070.000466
ORF7a52N52del1aaCaa-11AY.1190.000035
ORF7a52N52del1aaCaa-11AY.1200.000037
ORF7a52N52del1aaCaa-11AY.230.00007
ORF7a52N52del1Aac-ac11AY.290.000016
ORF7a52N52del1aaCaa-11AY.3.10.000085
ORF7a52N52del1aaCaa-11AY.380.000499
ORF7a52N52del1aaCaa-11AY.5.30.000337
ORF7a52N52del1Aac-ac11AY.80.000606
ORF7a52N52del1aaCaa-11AY.98.10.000048
ORF7a52N52del1Aac-ac11B.10.000009
ORF7a52N52del1aaCaa-11B.1.2580.000067