CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 52 | N52del | del | AAC | --- | 5525 | 5525 | 1 | 27547-27549 |
Details of the mutation N52del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 52 | N52del | AAC | --- | 5525 | 5525 | All | 0.001057 |
ORF7a | 52 | N52del | AAC | --- | 1353 | 1353 | B.1.617.2 | 0.005095 |
ORF7a | 52 | N52del | AAC | --- | 580 | 580 | B.1.1.7 | 0.000519 |
ORF7a | 52 | N52del | AAC | --- | 554 | 554 | AY.25 | 0.003332 |
ORF7a | 52 | N52del | AAC | --- | 398 | 398 | AY.4 | 0.000619 |
ORF7a | 52 | N52del | AAC | --- | 231 | 231 | AY.102 | 0.006125 |
ORF7a | 52 | N52del | AAC | --- | 213 | 213 | AY.43 | 0.000944 |
ORF7a | 52 | N52del | AAC | --- | 182 | 182 | B.1.177.21 | 0.013918 |
ORF7a | 52 | N52del | AAC | --- | 137 | 137 | AY.103 | 0.000851 |
ORF7a | 52 | N52del | AAC | --- | 136 | 136 | AY.39 | 0.003361 |
ORF7a | 52 | N52del | AAC | --- | 131 | 131 | AY.3 | 0.001303 |
ORF7a | 52 | N52del | AAC | --- | 107 | 107 | AY.44 | 0.000651 |
ORF7a | 52 | N52del | AAC | --- | 94 | 94 | AY.120 | 0.003495 |
ORF7a | 52 | N52del | AAC | --- | 79 | 79 | AY.26 | 0.002237 |
ORF7a | 52 | N52del | AAC | --- | 77 | 77 | AY.29 | 0.001215 |
ORF7a | 52 | N52del | AAC | --- | 68 | 68 | AY.46.4 | 0.011186 |
ORF7a | 52 | N52del | AAC | --- | 62 | 62 | AY.100 | 0.002852 |
ORF7a | 52 | N52del | AAC | --- | 56 | 56 | AY.47 | 0.001742 |
ORF7a | 52 | N52del | AAC | --- | 48 | 48 | AY.3.1 | 0.004092 |
ORF7a | 52 | N52del | AAC | --- | 44 | 44 | B.1.2 | 0.000387 |
ORF7a | 52 | N52del | AAC | --- | 42 | 42 | B.1 | 0.000385 |
ORF7a | 52 | N52del | AAC | --- | 39 | 39 | B.1.621 | 0.003452 |
ORF7a | 52 | N52del | AAC | --- | 37 | 37 | B.1.1.284 | 0.003974 |
ORF7a | 52 | N52del | AAC | --- | 31 | 31 | AY.54 | 0.002956 |
ORF7a | 52 | N52del | AAC | --- | 28 | 28 | AY.42 | 0.001126 |
ORF7a | 52 | N52del | AAC | --- | 27 | 27 | AY.119 | 0.000953 |
ORF7a | 52 | N52del | AAC | --- | 26 | 26 | B.1.526 | 0.000611 |
ORF7a | 52 | N52del | AAC | --- | 24 | 24 | B.1.1.214 | 0.001331 |
ORF7a | 52 | N52del | AAC | --- | 23 | 23 | B.1.234 | 0.003035 |
ORF7a | 52 | N52del | AAC | --- | 20 | 20 | AY.7.2 | 0.011186 |
ORF7a | 52 | N52del | AAC | --- | 18 | 18 | AY.75 | 0.001008 |
ORF7a | 52 | N52del | AAC | --- | 18 | 18 | B.1.177 | 0.000237 |
ORF7a | 52 | N52del | AAC | --- | 18 | 18 | B.1.351 | 0.000535 |
ORF7a | 52 | N52del | AAC | --- | 17 | 17 | AY.5 | 0.000351 |
ORF7a | 52 | N52del | AAC | --- | 17 | 17 | P.1 | 0.000268 |
ORF7a | 52 | N52del | AAC | --- | 15 | 15 | AY.20 | 0.000583 |
ORF7a | 52 | N52del | AAC | --- | 14 | 14 | B.1.637 | 0.001023 |
ORF7a | 52 | N52del | AAC | --- | 14 | 14 | C.37 | 0.001625 |
ORF7a | 52 | N52del | AAC | --- | 13 | 13 | AY.68 | 0.003559 |
ORF7a | 52 | N52del | AAC | --- | 12 | 12 | AY.121 | 0.001624 |
ORF7a | 52 | N52del | AAC | --- | 12 | 12 | AY.23 | 0.000837 |
ORF7a | 52 | N52del | AAC | --- | 12 | 12 | AY.98.1 | 0.000581 |
ORF7a | 52 | N52del | AAC | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 52 | N52del | AAC | --- | 12 | 12 | B.1.596 | 0.001046 |
ORF7a | 52 | N52del | AAC | --- | 11 | 11 | AY.106 | 0.003684 |
ORF7a | 52 | N52del | AAC | --- | 11 | 11 | AY.110 | 0.00124 |
ORF7a | 52 | N52del | AAC | --- | 11 | 11 | AY.120.1 | 0.003531 |
ORF7a | 52 | N52del | AAC | --- | 11 | 11 | AY.37 | 0.003477 |
ORF7a | 52 | N52del | AAC | --- | 10 | 10 | AY.118 | 0.000626 |
ORF7a | 52 | N52del | AAC | --- | 10 | 10 | AY.46.2 | 0.006353 |
ORF7a | 52 | N52del | AAC | --- | 10 | 10 | B.1.243 | 0.000696 |
ORF7a | 52 | N52del | AAC | --- | 10 | 10 | R.1 | 0.0009 |
ORF7a | 52 | N52del | AAC | --- | 9 | 9 | AY.4.2 | 0.000195 |
ORF7a | 52 | N52del | AAC | --- | 9 | 9 | AY.45 | 0.001095 |
ORF7a | 52 | N52del | AAC | --- | 9 | 9 | AY.6 | 0.00037 |
ORF7a | 52 | N52del | AAC | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 52 | N52del | AAC | --- | 8 | 8 | AY.113 | 0.001139 |
ORF7a | 52 | N52del | AAC | --- | 8 | 8 | AY.116 | 0.002294 |
ORF7a | 52 | N52del | AAC | --- | 8 | 8 | AY.117 | 0.000676 |
ORF7a | 52 | N52del | AAC | --- | 8 | 8 | AY.30 | 0.003166 |
ORF7a | 52 | N52del | AAC | --- | 8 | 8 | AY.34 | 0.000776 |
ORF7a | 52 | N52del | AAC | --- | 8 | 8 | AY.98 | 0.000632 |
ORF7a | 52 | N52del | AAC | --- | 8 | 8 | B.1.1.231 | 0.024768 |
ORF7a | 52 | N52del | AAC | --- | 7 | 7 | AY.109 | 0.005178 |
ORF7a | 52 | N52del | AAC | --- | 7 | 7 | AY.39.1 | 0.000277 |
ORF7a | 52 | N52del | AAC | --- | 7 | 7 | B.1.160 | 0.000218 |
ORF7a | 52 | N52del | AAC | --- | 7 | 7 | B.1.525 | 0.000792 |
ORF7a | 52 | N52del | AAC | --- | 7 | 7 | P.1.15 | 0.001626 |
ORF7a | 52 | N52del | AAC | --- | 6 | 6 | AY.33 | 0.000401 |
ORF7a | 52 | N52del | AAC | --- | 6 | 6 | B.1.429 | 0.000141 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | AY.14 | 0.00044 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | AY.35 | 0.001165 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | AY.46.1 | 0.005133 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | AY.61 | 0.000524 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | AY.88 | 0.004421 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | AY.9.1 | 0.000419 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | AY.91 | 0.003652 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF7a | 52 | N52del | AAC | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | AY.107 | 0.001864 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | AY.111 | 0.000733 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | AY.66 | 0.004278 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | AY.74 | 0.000463 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | AY.85 | 0.001709 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | AY.9.2 | 0.000147 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | AY.99 | 0.004197 |
ORF7a | 52 | N52del | AAC | --- | 4 | 4 | B.1.427 | 0.000202 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | A | 0.001161 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | AY.114 | 0.000693 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | AY.29.1 | 0.000662 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | AY.34.1 | 0.00153 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | AY.40 | 0.002893 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | AY.46 | 0.000312 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | AY.53 | 0.000863 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | AY.84 | 0.001312 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | AY.92 | 0.000862 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | B.1.1.519 | 0.000119 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | B.1.214.2 | 0.001799 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | B.1.258.17 | 0.000312 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | B.1.582 | 0.001472 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 52 | N52del | AAC | --- | 3 | 3 | P.1.14 | 0.000143 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.1 | 0.000791 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.13 | 0.000322 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.19 | 0.002281 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.24 | 0.000862 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.5.3 | 0.000675 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.57 | 0.001312 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.7 | 0.000392 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.7.1 | 0.000225 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.73 | 0.001331 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.375 | 0.001639 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 52 | N52del | AAC | --- | 2 | 2 | P.2 | 0.000373 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.22 | 0.002092 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.51 | 0.000909 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.55 | 0.000917 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.81 | 0.001992 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.89 | 0.004902 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.90 | 0.000684 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B | 0.000128 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.1.366 | 0.015873 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.406 | 0.006061 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | B.55 | 0.00295 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | D.2 | 0.000075 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | K.3 | 0.006173 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 52 | N52del | AAC | --- | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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