CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = N52R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a52N52RnonsynaACaGA22160.72727327547-27549
ORF7a52N52RnonsynaACaGG2230.13636427547-27549
ORF7a52N52RnonsynAACCGA2220.090909127547-27549
ORF7a52N52RnonsynAACCGT2210.045454527547-27549

Details of the mutation N52R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a52N52RaACaGA1622All0.000003
ORF7a52N52RaACaGG322All0.000001
ORF7a52N52RAACCGA222All0
ORF7a52N52RAACCGT122All0
ORF7a52N52RaACaGA59AY.250.00003
ORF7a52N52RAACCGA29AY.250.000012
ORF7a52N52RAACCGT19AY.250.000006
ORF7a52N52RaACaGG19AY.250.000006
ORF7a52N52RaACaGA99AY.40.000014
ORF7a52N52RaACaGA11AY.3.10.000085
ORF7a52N52RaACaGG11AY.540.000095
ORF7a52N52RaACaGA11B.1.1.2140.000055
ORF7a52N52RaACaGG11B.1.4970.000315