CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = N52N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a52N52NsynaaCaaT61356135127547-27549

Details of the mutation N52N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a52N52NaaCaaT61356135All0.001173
ORF7a52N52NaaCaaT984984AY.1090.727811
ORF7a52N52NaaCaaT839839B.1.1.70.000751
ORF7a52N52NaaCaaT714714AY.40.001111
ORF7a52N52NaaCaaT349349AY.290.005505
ORF7a52N52NaaCaaT255255B.10.002336
ORF7a52N52NaaCaaT247247AY.1020.006549
ORF7a52N52NaaCaaT219219B.1.617.20.000825
ORF7a52N52NaaCaaT218218AY.1030.001354
ORF7a52N52NaaCaaT183183AY.440.001114
ORF7a52N52NaaCaaT183183B.1.20.001611
ORF7a52N52NaaCaaT151151P.10.002379
ORF7a52N52NaaCaaT125125B.1.6320.838926
ORF7a52N52NaaCaaT108108AY.250.00065
ORF7a52N52NaaCaaT9696B.1.10.001742
ORF7a52N52NaaCaaT7979B.1.4290.001859
ORF7a52N52NaaCaaT5454AY.98.10.002615
ORF7a52N52NaaCaaT5353AY.430.000235
ORF7a52N52NaaCaaT5252C.36.30.029495
ORF7a52N52NaaCaaT5151AY.30.000507
ORF7a52N52NaaCaaT4747P.1.140.002247
ORF7a52N52NaaCaaT4444B.1.2430.003062
ORF7a52N52NaaCaaT3232AY.29.10.007056
ORF7a52N52NaaCaaT3030B.1.1770.000395
ORF7a52N52NaaCaaT2626AY.50.000537
ORF7a52N52NaaCaaT2525AY.4.20.000542
ORF7a52N52NaaCaaT2525R.10.00225
ORF7a52N52NaaCaaT2424B.1.1.500.016293
ORF7a52N52NaaCaaT2323B.1.1.10.007514
ORF7a52N52NaaCaaT2121AY.260.000595
ORF7a52N52NaaCaaT1919AY.470.000591
ORF7a52N52NaaCaaT1818B.1.3110.004942
ORF7a52N52NaaCaaT1717B.1.177.860.003119
ORF7a52N52NaaCaaT1717B.1.2580.001131
ORF7a52N52NaaCaaT1717B.1.360.00248
ORF7a52N52NaaCaaT1616AY.390.000395
ORF7a52N52NaaCaaT1616AY.920.004596
ORF7a52N52NaaCaaT1616B.1.1600.000499
ORF7a52N52NaaCaaT1616B.1.6370.001169
ORF7a52N52NaaCaaT1515AY.110.02008
ORF7a52N52NaaCaaT1515AY.120.10.004815
ORF7a52N52NaaCaaT1515AY.460.001561
ORF7a52N52NaaCaaT1515C.370.001741
ORF7a52N52NaaCaaT1414AY.10.00554
ORF7a52N52NaaCaaT1414AY.1000.000644
ORF7a52N52NaaCaaT1414B.1.1.2140.000776
ORF7a52N52NaaCaaT1414B.1.2340.001847
ORF7a52N52NaaCaaT1414B.1.5260.000329
ORF7a52N52NaaCaaT1313B.1.258.170.001352
ORF7a52N52NaaCaaT1111AY.1200.000409
ORF7a52N52NaaCaaT1111AY.46.10.011294
ORF7a52N52NaaCaaT1111B.1.1.5190.000437
ORF7a52N52NaaCaaT1111B.1.2210.000781
ORF7a52N52NaaCaaT1111B.1.3510.000327
ORF7a52N52NaaCaaT1010AY.200.000389
ORF7a52N52NaaCaaT1010B.1.177.600.002184
ORF7a52N52NaaCaaT1010B.1.4270.000505
ORF7a52N52NaaCaaT99AY.1060.003014
ORF7a52N52NaaCaaT99AY.1210.001218
ORF7a52N52NaaCaaT99AY.610.000943
ORF7a52N52NaaCaaT99B.1.617.10.001161
ORF7a52N52NaaCaaT99P.30.014354
ORF7a52N52NaaCaaT88AY.1130.001139
ORF7a52N52NaaCaaT88AY.9.20.000294
ORF7a52N52NaaCaaT88AY.980.000632
ORF7a52N52NaaCaaT88B.1.1.1920.018476
ORF7a52N52NaaCaaT88B.1.4800.0199
ORF7a52N52NaaCaaT88B.1.5960.000697
ORF7a52N52NaaCaaT88B.1.6210.000708
ORF7a52N52NaaCaaT88P.1.100.002156
ORF7a52N52NaaCaaT77AY.360.001037
ORF7a52N52NaaCaaT77AY.4.50.000752
ORF7a52N52NaaCaaT77AY.840.003062
ORF7a52N52NaaCaaT77AY.99.20.000645
ORF7a52N52NaaCaaT77B.1.1.2220.001428
ORF7a52N52NaaCaaT66AY.1190.000212
ORF7a52N52NaaCaaT66AY.230.000418
ORF7a52N52NaaCaaT66B.1.1.250.003411
ORF7a52N52NaaCaaT66B.1.1.630.002315
ORF7a52N52NaaCaaT66B.1.438.10.000644
ORF7a52N52NaaCaaT55AY.23.10.002087
ORF7a52N52NaaCaaT55AY.450.000608
ORF7a52N52NaaCaaT55AY.5.30.001687
ORF7a52N52NaaCaaT55AY.750.00028
ORF7a52N52NaaCaaT55B.1.1.3060.002192
ORF7a52N52NaaCaaT55B.1.4000.002145
ORF7a52N52NaaCaaT55Q.40.002274
ORF7a52N52NaaCaaT44AY.1170.000338
ORF7a52N52NaaCaaT44AY.4.2.10.000596
ORF7a52N52NaaCaaT44AY.420.000161
ORF7a52N52NaaCaaT44AY.46.60.000289
ORF7a52N52NaaCaaT44AY.60.000165
ORF7a52N52NaaCaaT44AY.810.007968
ORF7a52N52NaaCaaT44AY.9.10.000335
ORF7a52N52NaaCaaT44AY.950.003044
ORF7a52N52NaaCaaT44B.1.1.1590.018692
ORF7a52N52NaaCaaT44B.1.1.410.025316
ORF7a52N52NaaCaaT44B.1.1.4340.001394
ORF7a52N52NaaCaaT44B.1.1.710.024242
ORF7a52N52NaaCaaT44B.1.177.230.012945
ORF7a52N52NaaCaaT44B.1.177.520.00703
ORF7a52N52NaaCaaT44B.1.3610.005155
ORF7a52N52NaaCaaT44B.1.3620.006163
ORF7a52N52NaaCaaT44P.60.012579
ORF7a52N52NaaCaaT33AY.1180.000188
ORF7a52N52NaaCaaT33AY.330.0002
ORF7a52N52NaaCaaT33AY.780.004622
ORF7a52N52NaaCaaT33AY.850.001282
ORF7a52N52NaaCaaT33AZ.20.002463
ORF7a52N52NaaCaaT33B.1.1.2980.002586
ORF7a52N52NaaCaaT33B.1.177.530.007177
ORF7a52N52NaaCaaT33B.1.177.730.001699
ORF7a52N52NaaCaaT33B.1.3490.002144
ORF7a52N52NaaCaaT33B.1.3960.002117
ORF7a52N52NaaCaaT33B.1.466.20.001174
ORF7a52N52NaaCaaT33B.1.4700.004213
ORF7a52N52NaaCaaT33B.1.5990.010949
ORF7a52N52NaaCaaT33D.20.000225
ORF7a52N52NaaCaaT33P.1.120.001452
ORF7a52N52NaaCaaT33Q.30.000435
ORF7a52N52NaaCaaT33Q.80.000495
ORF7a52N52NaaCaaT22AY.1050.001286
ORF7a52N52NaaCaaT22AY.120.000632
ORF7a52N52NaaCaaT22AY.320.001065
ORF7a52N52NaaCaaT22AY.340.000194
ORF7a52N52NaaCaaT22AY.34.10.00102
ORF7a52N52NaaCaaT22AY.540.000191
ORF7a52N52NaaCaaT22AY.75.10.000361
ORF7a52N52NaaCaaT22AY.90.000135
ORF7a52N52NaaCaaT22B0.000256
ORF7a52N52NaaCaaT22B.1.1.1740.006757
ORF7a52N52NaaCaaT22B.1.1.2300.018349
ORF7a52N52NaaCaaT22B.1.1.2650.006309
ORF7a52N52NaaCaaT22B.1.1.280.000622
ORF7a52N52NaaCaaT22B.1.1.3180.000604
ORF7a52N52NaaCaaT22B.1.1.330.000842
ORF7a52N52NaaCaaT22B.1.1.340.026316
ORF7a52N52NaaCaaT22B.1.1.3540.008772
ORF7a52N52NaaCaaT22B.1.1.3970.004505
ORF7a52N52NaaCaaT22B.1.1470.001512
ORF7a52N52NaaCaaT22B.1.177.20.009091
ORF7a52N52NaaCaaT22B.1.177.210.000153
ORF7a52N52NaaCaaT22B.1.177.470.025974
ORF7a52N52NaaCaaT22B.1.214.20.001199
ORF7a52N52NaaCaaT22B.1.2410.001623
ORF7a52N52NaaCaaT22B.1.3010.011834
ORF7a52N52NaaCaaT22B.1.36.170.000988
ORF7a52N52NaaCaaT22B.1.5250.000226
ORF7a52N52NaaCaaT22B.1.564.10.003155
ORF7a52N52NaaCaaT22B.1.5650.001621
ORF7a52N52NaaCaaT22B.1.5680.002222
ORF7a52N52NaaCaaT22B.1.5950.000522
ORF7a52N52NaaCaaT22B.1.6230.001073
ORF7a52N52NaaCaaT22B.1.80.003945
ORF7a52N52NaaCaaT22C.160.002121
ORF7a52N52NaaCaaT22P.1.150.000465
ORF7a52N52NaaCaaT22P.20.000373
ORF7a52N52NaaCaaT11A.23.10.000704
ORF7a52N52NaaCaaT11A.270.001656
ORF7a52N52NaaCaaT11AU.10.001266
ORF7a52N52NaaCaaT11AY.1110.000183
ORF7a52N52NaaCaaT11AY.1140.000231
ORF7a52N52NaaCaaT11AY.116.10.000311
ORF7a52N52NaaCaaT11AY.140.000088
ORF7a52N52NaaCaaT11AY.160.00038
ORF7a52N52NaaCaaT11AY.220.002092
ORF7a52N52NaaCaaT11AY.240.000431
ORF7a52N52NaaCaaT11AY.270.000065
ORF7a52N52NaaCaaT11AY.280.00189
ORF7a52N52NaaCaaT11AY.300.000396
ORF7a52N52NaaCaaT11AY.350.000233
ORF7a52N52NaaCaaT11AY.370.000316
ORF7a52N52NaaCaaT11AY.39.10.00004
ORF7a52N52NaaCaaT11AY.39.1.10.000725
ORF7a52N52NaaCaaT11AY.39.20.001541
ORF7a52N52NaaCaaT11AY.4.40.000409
ORF7a52N52NaaCaaT11AY.46.20.000635
ORF7a52N52NaaCaaT11AY.46.40.000165
ORF7a52N52NaaCaaT11AY.480.000465
ORF7a52N52NaaCaaT11AY.520.000814
ORF7a52N52NaaCaaT11AY.570.000656
ORF7a52N52NaaCaaT11AY.640.000595
ORF7a52N52NaaCaaT11AY.660.00107
ORF7a52N52NaaCaaT11AY.680.000274
ORF7a52N52NaaCaaT11AY.690.000187
ORF7a52N52NaaCaaT11AY.720.001361
ORF7a52N52NaaCaaT11AY.740.000116
ORF7a52N52NaaCaaT11AY.760.004831
ORF7a52N52NaaCaaT11AY.870.000833
ORF7a52N52NaaCaaT11AY.890.004902
ORF7a52N52NaaCaaT11AY.900.000684
ORF7a52N52NaaCaaT11AY.930.000273
ORF7a52N52NaaCaaT11AY.940.000443
ORF7a52N52NaaCaaT11B.1.1.1210.002427
ORF7a52N52NaaCaaT11B.1.1.1380.006061
ORF7a52N52NaaCaaT11B.1.1.1530.001095
ORF7a52N52NaaCaaT11B.1.1.2000.007463
ORF7a52N52NaaCaaT11B.1.1.2070.001182
ORF7a52N52NaaCaaT11B.1.1.2160.00089
ORF7a52N52NaaCaaT11B.1.1.2630.001558
ORF7a52N52NaaCaaT11B.1.1.2690.001353
ORF7a52N52NaaCaaT11B.1.1.2940.001266
ORF7a52N52NaaCaaT11B.1.1.3980.003226
ORF7a52N52NaaCaaT11B.1.1.4090.002833
ORF7a52N52NaaCaaT11B.1.1.4160.000905
ORF7a52N52NaaCaaT11B.1.1.460.004367
ORF7a52N52NaaCaaT11B.1.1.5260.003546
ORF7a52N52NaaCaaT11B.1.1.5280.004808
ORF7a52N52NaaCaaT11B.1.1.540.003021
ORF7a52N52NaaCaaT11B.1.160.260.002421
ORF7a52N52NaaCaaT11B.1.177.110.001698
ORF7a52N52NaaCaaT11B.1.177.40.000211
ORF7a52N52NaaCaaT11B.1.177.590.016129
ORF7a52N52NaaCaaT11B.1.177.60.000977
ORF7a52N52NaaCaaT11B.1.177.650.000665
ORF7a52N52NaaCaaT11B.1.177.810.000189
ORF7a52N52NaaCaaT11B.1.177.870.000728
ORF7a52N52NaaCaaT11B.1.1940.04
ORF7a52N52NaaCaaT11B.1.221.40.004167
ORF7a52N52NaaCaaT11B.1.2220.001692
ORF7a52N52NaaCaaT11B.1.2400.000216
ORF7a52N52NaaCaaT11B.1.258.110.000396
ORF7a52N52NaaCaaT11B.1.351.20.000303
ORF7a52N52NaaCaaT11B.1.351.50.0006
ORF7a52N52NaaCaaT11B.1.36.100.004785
ORF7a52N52NaaCaaT11B.1.36.160.001425
ORF7a52N52NaaCaaT11B.1.36.180.00042
ORF7a52N52NaaCaaT11B.1.36.290.000517
ORF7a52N52NaaCaaT11B.1.36.80.001
ORF7a52N52NaaCaaT11B.1.3660.004878
ORF7a52N52NaaCaaT11B.1.3690.000285
ORF7a52N52NaaCaaT11B.1.3820.008929
ORF7a52N52NaaCaaT11B.1.3990.001934
ORF7a52N52NaaCaaT11B.1.4040.001302
ORF7a52N52NaaCaaT11B.1.4090.000781
ORF7a52N52NaaCaaT11B.1.4110.003704
ORF7a52N52NaaCaaT11B.1.4660.023256
ORF7a52N52NaaCaaT11B.1.4680.005714
ORF7a52N52NaaCaaT11B.1.5090.000866
ORF7a52N52NaaCaaT11B.1.5640.000426
ORF7a52N52NaaCaaT11B.1.5820.000491
ORF7a52N52NaaCaaT11B.1.6270.00202
ORF7a52N52NaaCaaT11B.1.6290.013333
ORF7a52N52NaaCaaT11B.3.10.001658
ORF7a52N52NaaCaaT11B.40.002208
ORF7a52N52NaaCaaT11B.6.60.000889
ORF7a52N52NaaCaaT11C.10.002392
ORF7a52N52NaaCaaT11C.110.010638
ORF7a52N52NaaCaaT11C.300.001727
ORF7a52N52NaaCaaT11C.37.10.002618
ORF7a52N52NaaCaaT11C.80.004464
ORF7a52N52NaaCaaT11N.50.001767
ORF7a52N52NaaCaaT11N.60.007092
ORF7a52N52NaaCaaT11P.1.70.000319
ORF7a52N52NaaCaaT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.