CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = N43S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a43N43SnonsynaAtaGt3173020.95268127520-27522
ORF7a43N43SnonsynAAtTCt31760.018927427520-27522
ORF7a43N43SnonsynAATTCA31750.015772927520-27522
ORF7a43N43SnonsynaATaGC31730.0094637227520-27522
ORF7a43N43SnonsynAATTCG31710.0031545727520-27522

Details of the mutation N43S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a43N43SaAtaGt302317All0.000058
ORF7a43N43SAAtTCt6317All0.000001
ORF7a43N43SAATTCA5317All0.000001
ORF7a43N43SaATaGC3317All0.000001
ORF7a43N43SAATTCG1317All0
ORF7a43N43SaAtaGt125125B.1.1.70.000112
ORF7a43N43SaAtaGt5051AY.430.000222
ORF7a43N43SAAtTCt151AY.430.000004
ORF7a43N43SaAtaGt3737AY.470.001151
ORF7a43N43SaAtaGt2222AY.50.000454
ORF7a43N43SaAtaGt310AY.250.000018
ORF7a43N43SAAtTCt310AY.250.000018
ORF7a43N43SAATTCA310AY.250.000018
ORF7a43N43SAATTCG110AY.250.000006
ORF7a43N43SaAtaGt77B.1.6280.002467
ORF7a43N43SaAtaGt66AY.40.000009
ORF7a43N43SAATTCA26B.1.617.20.000008
ORF7a43N43SAAtTCt26B.1.617.20.000008
ORF7a43N43SaATaGC16B.1.617.20.000004
ORF7a43N43SaAtaGt16B.1.617.20.000004
ORF7a43N43SaAtaGt55AY.200.000194
ORF7a43N43SaAtaGt55AY.440.00003
ORF7a43N43SaAtaGt55B.10.000046
ORF7a43N43SaAtaGt44B.1.20.000035
ORF7a43N43SaAtaGt33B.1.1.2400.014085
ORF7a43N43SaAtaGt33B.1.1600.000094
ORF7a43N43SaAtaGt33P.1.10.000953
ORF7a43N43SaAtaGt22AY.1030.000012
ORF7a43N43SaAtaGt22B.1.1770.000026
ORF7a43N43SaAtaGt22B.1.617.10.000258
ORF7a43N43SaAtaGt22B.1.617.30.00597
ORF7a43N43SaAtaGt11AY.116.10.000311
ORF7a43N43SaAtaGt11AY.260.000028
ORF7a43N43SaAtaGt11AY.30.00001
ORF7a43N43SaAtaGt11AY.390.000025
ORF7a43N43SaAtaGt11AY.46.20.000635
ORF7a43N43SaATaGC11AY.5.40.000277
ORF7a43N43SaAtaGt11B.1.10.000018
ORF7a43N43SaAtaGt11B.1.177.440.000519
ORF7a43N43SaATaGC11B.1.177.630.002703
ORF7a43N43SaAtaGt11B.1.2580.000067
ORF7a43N43SaAtaGt11B.1.2790.000514
ORF7a43N43SaAtaGt11B.1.3200.001245
ORF7a43N43SaAtaGt11B.1.36.80.001
ORF7a43N43SaAtaGt11B.1.5260.000024
ORF7a43N43SaAtaGt11B.1.930.000934
ORF7a43N43SaAtaGt11P.10.000016
ORF7a43N43SaAtaGt11Q.80.000165