CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 96 | L96F | nonsyn | Ctt | Ttt | 3283 | 3282 | 0.999695 | 27679-27681 | |
ORF7a | 96 | L96F | nonsyn | CtT | TtC | 3283 | 1 | 0.000304599 | 27679-27681 |
Details of the mutation L96F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 96 | L96F | Ctt | Ttt | 3282 | 3283 | All | 0.000628 |
ORF7a | 96 | L96F | CtT | TtC | 1 | 3283 | All | 0 |
ORF7a | 96 | L96F | Ctt | Ttt | 852 | 853 | B.1.1.7 | 0.000763 |
ORF7a | 96 | L96F | CtT | TtC | 1 | 853 | B.1.1.7 | 0.000001 |
ORF7a | 96 | L96F | Ctt | Ttt | 236 | 236 | B.1.438.1 | 0.025314 |
ORF7a | 96 | L96F | Ctt | Ttt | 198 | 198 | B.1.596 | 0.017253 |
ORF7a | 96 | L96F | Ctt | Ttt | 181 | 181 | B.1.1 | 0.003284 |
ORF7a | 96 | L96F | Ctt | Ttt | 149 | 149 | AY.4 | 0.000232 |
ORF7a | 96 | L96F | Ctt | Ttt | 142 | 142 | P.1.14 | 0.006788 |
ORF7a | 96 | L96F | Ctt | Ttt | 137 | 137 | P.1 | 0.002158 |
ORF7a | 96 | L96F | Ctt | Ttt | 123 | 123 | B.1.2 | 0.001083 |
ORF7a | 96 | L96F | Ctt | Ttt | 83 | 83 | B.1.1.270 | 0.85567 |
ORF7a | 96 | L96F | Ctt | Ttt | 74 | 74 | B.1.617.2 | 0.000279 |
ORF7a | 96 | L96F | Ctt | Ttt | 59 | 59 | B.1.177.21 | 0.004512 |
ORF7a | 96 | L96F | Ctt | Ttt | 55 | 55 | B.1 | 0.000504 |
ORF7a | 96 | L96F | Ctt | Ttt | 50 | 50 | B.1.429 | 0.001176 |
ORF7a | 96 | L96F | Ctt | Ttt | 49 | 49 | AY.25 | 0.000295 |
ORF7a | 96 | L96F | Ctt | Ttt | 39 | 39 | AY.43 | 0.000173 |
ORF7a | 96 | L96F | Ctt | Ttt | 33 | 33 | B.1.351 | 0.000981 |
ORF7a | 96 | L96F | Ctt | Ttt | 27 | 27 | AY.29 | 0.000426 |
ORF7a | 96 | L96F | Ctt | Ttt | 25 | 25 | AY.103 | 0.000155 |
ORF7a | 96 | L96F | Ctt | Ttt | 25 | 25 | B.1.258 | 0.001664 |
ORF7a | 96 | L96F | Ctt | Ttt | 25 | 25 | B.1.564 | 0.010647 |
ORF7a | 96 | L96F | Ctt | Ttt | 24 | 24 | B.1.177.86 | 0.004403 |
ORF7a | 96 | L96F | Ctt | Ttt | 23 | 23 | B.1.177 | 0.000303 |
ORF7a | 96 | L96F | Ctt | Ttt | 23 | 23 | B.1.258.17 | 0.002391 |
ORF7a | 96 | L96F | Ctt | Ttt | 21 | 21 | C.36 | 0.019126 |
ORF7a | 96 | L96F | Ctt | Ttt | 20 | 20 | AY.44 | 0.000122 |
ORF7a | 96 | L96F | Ctt | Ttt | 20 | 20 | B.1.160 | 0.000624 |
ORF7a | 96 | L96F | Ctt | Ttt | 19 | 19 | AY.102 | 0.000504 |
ORF7a | 96 | L96F | Ctt | Ttt | 19 | 19 | B.1.243 | 0.001322 |
ORF7a | 96 | L96F | Ctt | Ttt | 19 | 19 | B.1.609 | 0.009108 |
ORF7a | 96 | L96F | Ctt | Ttt | 18 | 18 | B.1.582 | 0.008832 |
ORF7a | 96 | L96F | Ctt | Ttt | 16 | 16 | P.1.7 | 0.005109 |
ORF7a | 96 | L96F | Ctt | Ttt | 15 | 15 | B.1.1.294 | 0.018987 |
ORF7a | 96 | L96F | Ctt | Ttt | 13 | 13 | B.1.1.519 | 0.000516 |
ORF7a | 96 | L96F | Ctt | Ttt | 13 | 13 | P.1.2 | 0.015029 |
ORF7a | 96 | L96F | Ctt | Ttt | 12 | 12 | B.1.526 | 0.000282 |
ORF7a | 96 | L96F | Ctt | Ttt | 11 | 11 | AY.75 | 0.000616 |
ORF7a | 96 | L96F | Ctt | Ttt | 11 | 11 | B.1.621 | 0.000974 |
ORF7a | 96 | L96F | Ctt | Ttt | 10 | 10 | AY.100 | 0.00046 |
ORF7a | 96 | L96F | Ctt | Ttt | 10 | 10 | AY.39 | 0.000247 |
ORF7a | 96 | L96F | Ctt | Ttt | 10 | 10 | B.1.1.1 | 0.003267 |
ORF7a | 96 | L96F | Ctt | Ttt | 10 | 10 | B.1.1.422 | 0.454545 |
ORF7a | 96 | L96F | Ctt | Ttt | 10 | 10 | B.1.575 | 0.003034 |
ORF7a | 96 | L96F | Ctt | Ttt | 9 | 9 | B.1.1.434 | 0.003137 |
ORF7a | 96 | L96F | Ctt | Ttt | 9 | 9 | B.1.146 | 0.038136 |
ORF7a | 96 | L96F | Ctt | Ttt | 9 | 9 | B.1.189 | 0.038627 |
ORF7a | 96 | L96F | Ctt | Ttt | 9 | 9 | B.1.36 | 0.001313 |
ORF7a | 96 | L96F | Ctt | Ttt | 8 | 8 | AY.3 | 0.00008 |
ORF7a | 96 | L96F | Ctt | Ttt | 8 | 8 | AY.9.2 | 0.000294 |
ORF7a | 96 | L96F | Ctt | Ttt | 7 | 7 | AY.20 | 0.000272 |
ORF7a | 96 | L96F | Ctt | Ttt | 7 | 7 | AY.39.1 | 0.000277 |
ORF7a | 96 | L96F | Ctt | Ttt | 7 | 7 | B.1.177.82 | 0.003341 |
ORF7a | 96 | L96F | Ctt | Ttt | 7 | 7 | B.1.211 | 0.175 |
ORF7a | 96 | L96F | Ctt | Ttt | 7 | 7 | B.1.221 | 0.000497 |
ORF7a | 96 | L96F | Ctt | Ttt | 7 | 7 | P.2 | 0.001306 |
ORF7a | 96 | L96F | Ctt | Ttt | 6 | 6 | AY.120 | 0.000223 |
ORF7a | 96 | L96F | Ctt | Ttt | 6 | 6 | B.1.1.63 | 0.002315 |
ORF7a | 96 | L96F | Ctt | Ttt | 6 | 6 | B.1.561 | 0.002382 |
ORF7a | 96 | L96F | Ctt | Ttt | 6 | 6 | B.40 | 0.002186 |
ORF7a | 96 | L96F | Ctt | Ttt | 5 | 5 | AY.13 | 0.000805 |
ORF7a | 96 | L96F | Ctt | Ttt | 5 | 5 | AY.42 | 0.000201 |
ORF7a | 96 | L96F | Ctt | Ttt | 5 | 5 | D.2 | 0.000375 |
ORF7a | 96 | L96F | Ctt | Ttt | 5 | 5 | Q.1 | 0.000632 |
ORF7a | 96 | L96F | Ctt | Ttt | 5 | 5 | Q.4 | 0.002274 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | AY.26 | 0.000113 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | AY.74 | 0.000463 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | AY.9 | 0.00027 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | B.1.1.317 | 0.001647 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | B.1.1.5 | 0.033333 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | B.1.234 | 0.000528 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | B.1.441 | 0.038462 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | B.1.525 | 0.000453 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | B.1.637 | 0.000292 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | C.16 | 0.004242 |
ORF7a | 96 | L96F | Ctt | Ttt | 4 | 4 | C.37 | 0.000464 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | AY.45 | 0.000365 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | AY.47 | 0.000093 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | AY.5 | 0.000062 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | AY.55 | 0.002752 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | AY.6 | 0.000123 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | AY.82 | 0.004071 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | B.1.1.219 | 0.015 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | B.1.177.4 | 0.000633 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | B.1.36.8 | 0.003 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | B.1.604 | 0.051724 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | B.1.620 | 0.002838 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | P.1.12 | 0.001452 |
ORF7a | 96 | L96F | Ctt | Ttt | 3 | 3 | P.1.17 | 0.000485 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | AY.121 | 0.000271 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | AY.29.1 | 0.000441 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | AY.4.5 | 0.000215 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | AY.69 | 0.000373 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.1.10 | 0.00223 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.1.385 | 0.008929 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.177.87 | 0.001456 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.36.19 | 0.018519 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.36.31 | 0.003503 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.396 | 0.001411 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.445 | 0.023529 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.560 | 0.009259 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.595 | 0.000522 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.612 | 0.005305 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | B.1.628 | 0.000705 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | N.5 | 0.003534 |
ORF7a | 96 | L96F | Ctt | Ttt | 2 | 2 | P.1.15 | 0.000465 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | A.1 | 0.000282 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AA.1 | 0.007246 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AU.3 | 0.00211 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.119 | 0.000035 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.15 | 0.002222 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.86 | 0.00083 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.96 | 0.002075 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | AZ.1 | 0.000867 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B | 0.000128 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.121 | 0.002427 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.191 | 0.004762 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.298 | 0.000862 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.303 | 0.002762 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.333 | 0.001076 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.335 | 0.012987 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.74 | 0.00431 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.1.8 | 0.003584 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.158 | 0.02381 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.20 | 0.001517 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.51 | 0.004566 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.55 | 0.002331 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.181 | 0.019608 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.188 | 0.016667 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.210 | 0.002132 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.236 | 0.002053 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.3 | 0.002618 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.315 | 0.006061 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.350 | 0.002933 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.36.26 | 0.002857 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.541 | 0.004425 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.546 | 0.003704 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.567 | 0.003333 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.590 | 0.004545 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | C.18 | 0.002591 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | C.30 | 0.001727 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | C.4 | 0.01 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | P.1.5 | 0.076923 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | Q.8 | 0.000165 |
ORF7a | 96 | L96F | Ctt | Ttt | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|