CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 86 | L86del | del | CTG | --- | 2292 | 2292 | 1 | 27649-27651 |
Details of the mutation L86del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 86 | L86del | CTG | --- | 2292 | 2292 | All | 0.000438 |
ORF7a | 86 | L86del | CTG | --- | 529 | 529 | B.1.1.7 | 0.000474 |
ORF7a | 86 | L86del | CTG | --- | 269 | 269 | AY.4 | 0.000419 |
ORF7a | 86 | L86del | CTG | --- | 176 | 176 | B.1.177.21 | 0.013459 |
ORF7a | 86 | L86del | CTG | --- | 99 | 99 | B.1.617.2 | 0.000373 |
ORF7a | 86 | L86del | CTG | --- | 89 | 89 | AY.29 | 0.001404 |
ORF7a | 86 | L86del | CTG | --- | 76 | 76 | AY.43 | 0.000337 |
ORF7a | 86 | L86del | CTG | --- | 64 | 64 | AY.103 | 0.000397 |
ORF7a | 86 | L86del | CTG | --- | 59 | 59 | AY.25 | 0.000355 |
ORF7a | 86 | L86del | CTG | --- | 56 | 56 | AY.3 | 0.000557 |
ORF7a | 86 | L86del | CTG | --- | 53 | 53 | AY.54 | 0.005053 |
ORF7a | 86 | L86del | CTG | --- | 41 | 41 | AY.39 | 0.001013 |
ORF7a | 86 | L86del | CTG | --- | 37 | 37 | B.1.1.284 | 0.003974 |
ORF7a | 86 | L86del | CTG | --- | 36 | 36 | B.1.621 | 0.003187 |
ORF7a | 86 | L86del | CTG | --- | 35 | 35 | AY.44 | 0.000213 |
ORF7a | 86 | L86del | CTG | --- | 29 | 29 | B.1.2 | 0.000255 |
ORF7a | 86 | L86del | CTG | --- | 27 | 27 | AY.102 | 0.000716 |
ORF7a | 86 | L86del | CTG | --- | 27 | 27 | B.1 | 0.000247 |
ORF7a | 86 | L86del | CTG | --- | 26 | 26 | AY.3.1 | 0.002217 |
ORF7a | 86 | L86del | CTG | --- | 26 | 26 | AY.42 | 0.001046 |
ORF7a | 86 | L86del | CTG | --- | 23 | 23 | AY.46.6 | 0.001661 |
ORF7a | 86 | L86del | CTG | --- | 23 | 23 | B.1.1.214 | 0.001276 |
ORF7a | 86 | L86del | CTG | --- | 20 | 20 | AY.119 | 0.000706 |
ORF7a | 86 | L86del | CTG | --- | 20 | 20 | AY.7.2 | 0.011186 |
ORF7a | 86 | L86del | CTG | --- | 18 | 18 | AY.46.4 | 0.002961 |
ORF7a | 86 | L86del | CTG | --- | 18 | 18 | B.1.526 | 0.000423 |
ORF7a | 86 | L86del | CTG | --- | 18 | 18 | P.1 | 0.000284 |
ORF7a | 86 | L86del | CTG | --- | 17 | 17 | AY.26 | 0.000481 |
ORF7a | 86 | L86del | CTG | --- | 15 | 15 | AY.100 | 0.00069 |
ORF7a | 86 | L86del | CTG | --- | 14 | 14 | B.1.177 | 0.000184 |
ORF7a | 86 | L86del | CTG | --- | 13 | 13 | AY.75 | 0.000728 |
ORF7a | 86 | L86del | CTG | --- | 12 | 12 | AY.121 | 0.001624 |
ORF7a | 86 | L86del | CTG | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 86 | L86del | CTG | --- | 12 | 12 | B.1.637 | 0.000877 |
ORF7a | 86 | L86del | CTG | --- | 11 | 11 | B.1.160 | 0.000343 |
ORF7a | 86 | L86del | CTG | --- | 10 | 10 | AY.120 | 0.000372 |
ORF7a | 86 | L86del | CTG | --- | 10 | 10 | B.1.351 | 0.000297 |
ORF7a | 86 | L86del | CTG | --- | 9 | 9 | R.1 | 0.00081 |
ORF7a | 86 | L86del | CTG | --- | 8 | 8 | AY.20 | 0.000311 |
ORF7a | 86 | L86del | CTG | --- | 8 | 8 | B.1.1 | 0.000145 |
ORF7a | 86 | L86del | CTG | --- | 8 | 8 | B.1.1.231 | 0.024768 |
ORF7a | 86 | L86del | CTG | --- | 7 | 7 | B.1.596 | 0.00061 |
ORF7a | 86 | L86del | CTG | --- | 7 | 7 | C.37 | 0.000812 |
ORF7a | 86 | L86del | CTG | --- | 7 | 7 | P.1.15 | 0.001626 |
ORF7a | 86 | L86del | CTG | --- | 6 | 6 | AY.47 | 0.000187 |
ORF7a | 86 | L86del | CTG | --- | 6 | 6 | AY.5 | 0.000124 |
ORF7a | 86 | L86del | CTG | --- | 5 | 5 | AY.106 | 0.001674 |
ORF7a | 86 | L86del | CTG | --- | 5 | 5 | AY.118 | 0.000313 |
ORF7a | 86 | L86del | CTG | --- | 5 | 5 | AY.98.1 | 0.000242 |
ORF7a | 86 | L86del | CTG | --- | 5 | 5 | B.1.1.519 | 0.000199 |
ORF7a | 86 | L86del | CTG | --- | 5 | 5 | B.1.525 | 0.000566 |
ORF7a | 86 | L86del | CTG | --- | 4 | 4 | Q.8 | 0.00066 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | AY.110 | 0.000338 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | AY.29.1 | 0.000662 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | AY.33 | 0.0002 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | AY.36 | 0.000445 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | AY.4.2 | 0.000065 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | AY.45 | 0.000365 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | B.1.177.15 | 0.001893 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | B.1.243 | 0.000209 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 86 | L86del | CTG | --- | 3 | 3 | Q.1 | 0.000379 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | 0.111111 | |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | A | 0.000774 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.113 | 0.000285 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.12 | 0.000632 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.120.1 | 0.000642 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.16 | 0.000759 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.24 | 0.000862 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.34 | 0.000194 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.61 | 0.00021 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.73 | 0.001331 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | AY.99 | 0.002099 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B | 0.000256 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.1.265 | 0.006309 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.214.2 | 0.001199 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.351.3 | 0.001753 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF7a | 86 | L86del | CTG | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.117 | 0.000085 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.258 | 0.003257 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.366 | 0.015873 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.527 | 0.003704 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | B.1.93 | 0.000934 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 86 | L86del | CTG | --- | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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