CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L86del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	86	L86del		del	CTG	---	2292	2292	1	27649-27651

Details of the mutation L86del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	86	L86del	CTG	---	2292	2292	All	0.000438
ORF7a	86	L86del	CTG	---	529	529	B.1.1.7	0.000474
ORF7a	86	L86del	CTG	---	269	269	AY.4	0.000419
ORF7a	86	L86del	CTG	---	176	176	B.1.177.21	0.013459
ORF7a	86	L86del	CTG	---	99	99	B.1.617.2	0.000373
ORF7a	86	L86del	CTG	---	89	89	AY.29	0.001404
ORF7a	86	L86del	CTG	---	76	76	AY.43	0.000337
ORF7a	86	L86del	CTG	---	64	64	AY.103	0.000397
ORF7a	86	L86del	CTG	---	59	59	AY.25	0.000355
ORF7a	86	L86del	CTG	---	56	56	AY.3	0.000557
ORF7a	86	L86del	CTG	---	53	53	AY.54	0.005053
ORF7a	86	L86del	CTG	---	41	41	AY.39	0.001013
ORF7a	86	L86del	CTG	---	37	37	B.1.1.284	0.003974
ORF7a	86	L86del	CTG	---	36	36	B.1.621	0.003187
ORF7a	86	L86del	CTG	---	35	35	AY.44	0.000213
ORF7a	86	L86del	CTG	---	29	29	B.1.2	0.000255
ORF7a	86	L86del	CTG	---	27	27	AY.102	0.000716
ORF7a	86	L86del	CTG	---	27	27	B.1	0.000247
ORF7a	86	L86del	CTG	---	26	26	AY.3.1	0.002217
ORF7a	86	L86del	CTG	---	26	26	AY.42	0.001046
ORF7a	86	L86del	CTG	---	23	23	AY.46.6	0.001661
ORF7a	86	L86del	CTG	---	23	23	B.1.1.214	0.001276
ORF7a	86	L86del	CTG	---	20	20	AY.119	0.000706
ORF7a	86	L86del	CTG	---	20	20	AY.7.2	0.011186
ORF7a	86	L86del	CTG	---	18	18	AY.46.4	0.002961
ORF7a	86	L86del	CTG	---	18	18	B.1.526	0.000423
ORF7a	86	L86del	CTG	---	18	18	P.1	0.000284
ORF7a	86	L86del	CTG	---	17	17	AY.26	0.000481
ORF7a	86	L86del	CTG	---	15	15	AY.100	0.00069
ORF7a	86	L86del	CTG	---	14	14	B.1.177	0.000184
ORF7a	86	L86del	CTG	---	13	13	AY.75	0.000728
ORF7a	86	L86del	CTG	---	12	12	AY.121	0.001624
ORF7a	86	L86del	CTG	---	12	12	B.1.324	0.019262
ORF7a	86	L86del	CTG	---	12	12	B.1.637	0.000877
ORF7a	86	L86del	CTG	---	11	11	B.1.160	0.000343
ORF7a	86	L86del	CTG	---	10	10	AY.120	0.000372
ORF7a	86	L86del	CTG	---	10	10	B.1.351	0.000297
ORF7a	86	L86del	CTG	---	9	9	R.1	0.00081
ORF7a	86	L86del	CTG	---	8	8	AY.20	0.000311
ORF7a	86	L86del	CTG	---	8	8	B.1.1	0.000145
ORF7a	86	L86del	CTG	---	8	8	B.1.1.231	0.024768
ORF7a	86	L86del	CTG	---	7	7	B.1.596	0.00061
ORF7a	86	L86del	CTG	---	7	7	C.37	0.000812
ORF7a	86	L86del	CTG	---	7	7	P.1.15	0.001626
ORF7a	86	L86del	CTG	---	6	6	AY.47	0.000187
ORF7a	86	L86del	CTG	---	6	6	AY.5	0.000124
ORF7a	86	L86del	CTG	---	5	5	AY.106	0.001674
ORF7a	86	L86del	CTG	---	5	5	AY.118	0.000313
ORF7a	86	L86del	CTG	---	5	5	AY.98.1	0.000242
ORF7a	86	L86del	CTG	---	5	5	B.1.1.519	0.000199
ORF7a	86	L86del	CTG	---	5	5	B.1.525	0.000566
ORF7a	86	L86del	CTG	---	4	4	Q.8	0.00066
ORF7a	86	L86del	CTG	---	3	3	AY.110	0.000338
ORF7a	86	L86del	CTG	---	3	3	AY.29.1	0.000662
ORF7a	86	L86del	CTG	---	3	3	AY.33	0.0002
ORF7a	86	L86del	CTG	---	3	3	AY.36	0.000445
ORF7a	86	L86del	CTG	---	3	3	AY.4.2	0.000065
ORF7a	86	L86del	CTG	---	3	3	AY.4.5	0.000322
ORF7a	86	L86del	CTG	---	3	3	AY.45	0.000365
ORF7a	86	L86del	CTG	---	3	3	B.1.1.121	0.007282
ORF7a	86	L86del	CTG	---	3	3	B.1.1.25	0.001706
ORF7a	86	L86del	CTG	---	3	3	B.1.177.15	0.001893
ORF7a	86	L86del	CTG	---	3	3	B.1.234	0.000396
ORF7a	86	L86del	CTG	---	3	3	B.1.243	0.000209
ORF7a	86	L86del	CTG	---	3	3	B.1.429	0.000071
ORF7a	86	L86del	CTG	---	3	3	B.1.626	0.017143
ORF7a	86	L86del	CTG	---	3	3	Q.1	0.000379
ORF7a	86	L86del	CTG	---	2	2		0.111111
ORF7a	86	L86del	CTG	---	2	2	A	0.000774
ORF7a	86	L86del	CTG	---	2	2	A.28	0.005291
ORF7a	86	L86del	CTG	---	2	2	AY.108	0.002205
ORF7a	86	L86del	CTG	---	2	2	AY.109	0.001479
ORF7a	86	L86del	CTG	---	2	2	AY.113	0.000285
ORF7a	86	L86del	CTG	---	2	2	AY.114	0.000462
ORF7a	86	L86del	CTG	---	2	2	AY.12	0.000632
ORF7a	86	L86del	CTG	---	2	2	AY.120.1	0.000642
ORF7a	86	L86del	CTG	---	2	2	AY.16	0.000759
ORF7a	86	L86del	CTG	---	2	2	AY.24	0.000862
ORF7a	86	L86del	CTG	---	2	2	AY.34	0.000194
ORF7a	86	L86del	CTG	---	2	2	AY.61	0.00021
ORF7a	86	L86del	CTG	---	2	2	AY.73	0.001331
ORF7a	86	L86del	CTG	---	2	2	AY.9.1	0.000167
ORF7a	86	L86del	CTG	---	2	2	AY.9.2	0.000073
ORF7a	86	L86del	CTG	---	2	2	AY.99	0.002099
ORF7a	86	L86del	CTG	---	2	2	B	0.000256
ORF7a	86	L86del	CTG	---	2	2	B.1.1.265	0.006309
ORF7a	86	L86del	CTG	---	2	2	B.1.177.86	0.000367
ORF7a	86	L86del	CTG	---	2	2	B.1.214.2	0.001199
ORF7a	86	L86del	CTG	---	2	2	B.1.258.11	0.000793
ORF7a	86	L86del	CTG	---	2	2	B.1.351.2	0.000605
ORF7a	86	L86del	CTG	---	2	2	B.1.351.3	0.001753
ORF7a	86	L86del	CTG	---	2	2	B.1.36	0.000292
ORF7a	86	L86del	CTG	---	2	2	B.1.427	0.000101
ORF7a	86	L86del	CTG	---	2	2	B.1.575	0.000607
ORF7a	86	L86del	CTG	---	2	2	B.1.595	0.000522
ORF7a	86	L86del	CTG	---	1	1	A.1	0.000282
ORF7a	86	L86del	CTG	---	1	1	A.2.2	0.001689
ORF7a	86	L86del	CTG	---	1	1	AY.101	0.00049
ORF7a	86	L86del	CTG	---	1	1	AY.105	0.000643
ORF7a	86	L86del	CTG	---	1	1	AY.116	0.000287
ORF7a	86	L86del	CTG	---	1	1	AY.116.1	0.000311
ORF7a	86	L86del	CTG	---	1	1	AY.117	0.000085
ORF7a	86	L86del	CTG	---	1	1	AY.13	0.000161
ORF7a	86	L86del	CTG	---	1	1	AY.14	0.000088
ORF7a	86	L86del	CTG	---	1	1	AY.19	0.00114
ORF7a	86	L86del	CTG	---	1	1	AY.23	0.00007
ORF7a	86	L86del	CTG	---	1	1	AY.27	0.000065
ORF7a	86	L86del	CTG	---	1	1	AY.30	0.000396
ORF7a	86	L86del	CTG	---	1	1	AY.39.1	0.00004
ORF7a	86	L86del	CTG	---	1	1	AY.46.5	0.000198
ORF7a	86	L86del	CTG	---	1	1	AY.5.4	0.000277
ORF7a	86	L86del	CTG	---	1	1	AY.53	0.000288
ORF7a	86	L86del	CTG	---	1	1	AY.59	0.00053
ORF7a	86	L86del	CTG	---	1	1	AY.68	0.000274
ORF7a	86	L86del	CTG	---	1	1	AY.69	0.000187
ORF7a	86	L86del	CTG	---	1	1	AY.7.1	0.000113
ORF7a	86	L86del	CTG	---	1	1	AY.71	0.000475
ORF7a	86	L86del	CTG	---	1	1	AY.75.1	0.00018
ORF7a	86	L86del	CTG	---	1	1	AY.85	0.000427
ORF7a	86	L86del	CTG	---	1	1	AY.9	0.000068
ORF7a	86	L86del	CTG	---	1	1	AY.91	0.00073
ORF7a	86	L86del	CTG	---	1	1	AY.98	0.000079
ORF7a	86	L86del	CTG	---	1	1	AY.99.2	0.000092
ORF7a	86	L86del	CTG	---	1	1	AZ.2	0.000821
ORF7a	86	L86del	CTG	---	1	1	B.1.1.170	0.001247
ORF7a	86	L86del	CTG	---	1	1	B.1.1.174	0.003378
ORF7a	86	L86del	CTG	---	1	1	B.1.1.192	0.002309
ORF7a	86	L86del	CTG	---	1	1	B.1.1.220	0.001859
ORF7a	86	L86del	CTG	---	1	1	B.1.1.222	0.000204
ORF7a	86	L86del	CTG	---	1	1	B.1.1.258	0.003257
ORF7a	86	L86del	CTG	---	1	1	B.1.1.318	0.000302
ORF7a	86	L86del	CTG	---	1	1	B.1.1.33	0.000421
ORF7a	86	L86del	CTG	---	1	1	B.1.1.366	0.015873
ORF7a	86	L86del	CTG	---	1	1	B.1.1.448	0.002033
ORF7a	86	L86del	CTG	---	1	1	B.1.1.70	0.000341
ORF7a	86	L86del	CTG	---	1	1	B.1.115	0.021739
ORF7a	86	L86del	CTG	---	1	1	B.1.177.10	0.000878
ORF7a	86	L86del	CTG	---	1	1	B.1.177.50	0.004695
ORF7a	86	L86del	CTG	---	1	1	B.1.177.57	0.000281
ORF7a	86	L86del	CTG	---	1	1	B.1.177.62	0.001192
ORF7a	86	L86del	CTG	---	1	1	B.1.177.81	0.000189
ORF7a	86	L86del	CTG	---	1	1	B.1.221	0.000071
ORF7a	86	L86del	CTG	---	1	1	B.1.240	0.000216
ORF7a	86	L86del	CTG	---	1	1	B.1.258	0.000067
ORF7a	86	L86del	CTG	---	1	1	B.1.258.17	0.000104
ORF7a	86	L86del	CTG	---	1	1	B.1.265	0.001271
ORF7a	86	L86del	CTG	---	1	1	B.1.319	0.003049
ORF7a	86	L86del	CTG	---	1	1	B.1.36.31	0.001751
ORF7a	86	L86del	CTG	---	1	1	B.1.371	0.001122
ORF7a	86	L86del	CTG	---	1	1	B.1.375	0.00082
ORF7a	86	L86del	CTG	---	1	1	B.1.459	0.004082
ORF7a	86	L86del	CTG	---	1	1	B.1.468	0.005714
ORF7a	86	L86del	CTG	---	1	1	B.1.470	0.001404
ORF7a	86	L86del	CTG	---	1	1	B.1.527	0.003704
ORF7a	86	L86del	CTG	---	1	1	B.1.577	0.000687
ORF7a	86	L86del	CTG	---	1	1	B.1.582	0.000491
ORF7a	86	L86del	CTG	---	1	1	B.1.617.1	0.000129
ORF7a	86	L86del	CTG	---	1	1	B.1.620	0.000946
ORF7a	86	L86del	CTG	---	1	1	B.1.621.1	0.000506
ORF7a	86	L86del	CTG	---	1	1	B.1.638	0.052632
ORF7a	86	L86del	CTG	---	1	1	B.1.9.1	0.032258
ORF7a	86	L86del	CTG	---	1	1	B.1.93	0.000934
ORF7a	86	L86del	CTG	---	1	1	C.36.3	0.000567
ORF7a	86	L86del	CTG	---	1	1	P.1.1	0.000318
ORF7a	86	L86del	CTG	---	1	1	P.1.12	0.000484
ORF7a	86	L86del	CTG	---	1	1	P.1.13	0.000898
ORF7a	86	L86del	CTG	---	1	1	P.1.14	0.000048
ORF7a	86	L86del	CTG	---	1	1	P.1.16	0.000374
ORF7a	86	L86del	CTG	---	1	1	P.1.3	0.034483
ORF7a	86	L86del	CTG	---	1	1	P.1.4	0.000977
ORF7a	86	L86del	CTG	---	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.