CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L86R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a86L86RnonsyncTgcGg1290.7527649-27651
ORF7a86L86RnonsynCTgAGg1210.083333327649-27651
ORF7a86L86RnonsyncTGcGA1210.083333327649-27651
ORF7a86L86RnonsynCTGAGA1210.083333327649-27651

Details of the mutation L86R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a86L86RcTgcGg912All0.000002
ORF7a86L86RCTgAGg112All0
ORF7a86L86RCTGAGA112All0
ORF7a86L86RcTGcGA112All0
ORF7a86L86RcTgcGg22B.10.000018
ORF7a86L86RcTgcGg22B.1.3510.000059
ORF7a86L86RcTGcGA11AY.1020.000027
ORF7a86L86RCTgAGg11AY.230.00007
ORF7a86L86RcTgcGg11AY.340.000097
ORF7a86L86RcTgcGg11AY.40.000002
ORF7a86L86RcTgcGg11AY.440.000006
ORF7a86L86RCTGAGA11AY.850.000427
ORF7a86L86RcTgcGg11B.1.1.3980.003226
ORF7a86L86RcTgcGg11B.1.1600.000031

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.