CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L86L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a86L86LsynCtgTtg791160530.76513727649-27651
ORF7a86L86LsynctGctT791115300.19340227649-27651
ORF7a86L86LsynctGctA79112850.036025827649-27651
ORF7a86L86LsynctGctC7911420.0053090627649-27651
ORF7a86L86LsynCtGTtA791110.00012640627649-27651

Details of the mutation L86L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a86L86LCtgTtg60537911All0.001158
ORF7a86L86LctGctT15307911All0.000293
ORF7a86L86LctGctA2857911All0.000055
ORF7a86L86LctGctC427911All0.000008
ORF7a86L86LCtGTtA17911All0
ORF7a86L86LCtgTtg36354130AY.40.005658
ORF7a86L86LctGctT4554130AY.40.000708
ORF7a86L86LctGctA354130AY.40.000054
ORF7a86L86LctGctC54130AY.40.000008
ORF7a86L86LCtgTtg9641074AY.30.009588
ORF7a86L86LctGctA631074AY.30.000627
ORF7a86L86LctGctT441074AY.30.000438
ORF7a86L86LctGctC31074AY.30.00003
ORF7a86L86LCtgTtg253381B.1.1.70.000226
ORF7a86L86LctGctT102381B.1.1.70.000091
ORF7a86L86LctGctA25381B.1.1.70.000022
ORF7a86L86LctGctC1381B.1.1.70.000001
ORF7a86L86LCtgTtg175257B.1.617.20.000659
ORF7a86L86LctGctT64257B.1.617.20.000241
ORF7a86L86LctGctA18257B.1.617.20.000068
ORF7a86L86LctGctT149151C.370.017293
ORF7a86L86LCtgTtg2151C.370.000232
ORF7a86L86LCtgTtg82137AY.430.000363
ORF7a86L86LctGctT46137AY.430.000204
ORF7a86L86LctGctA8137AY.430.000035
ORF7a86L86LctGctC1137AY.430.000004
ORF7a86L86LctGctT9699AY.9.10.008038
ORF7a86L86LCtgTtg299AY.9.10.000167
ORF7a86L86LctGctA199AY.9.10.000084
ORF7a86L86LCtgTtg5697AY.250.000337
ORF7a86L86LctGctT3897AY.250.000229
ORF7a86L86LctGctA297AY.250.000012
ORF7a86L86LctGctC197AY.250.000006
ORF7a86L86LCtgTtg7796AY.1030.000478
ORF7a86L86LctGctT1596AY.1030.000093
ORF7a86L86LctGctA496AY.1030.000025
ORF7a86L86LCtgTtg4692B.1.20.000405
ORF7a86L86LctGctT4092B.1.20.000352
ORF7a86L86LctGctA692B.1.20.000053
ORF7a86L86LCtgTtg4477AY.440.000268
ORF7a86L86LctGctT1677AY.440.000097
ORF7a86L86LctGctC1577AY.440.000091
ORF7a86L86LctGctA277AY.440.000012
ORF7a86L86LCtgTtg4674AY.1020.00122
ORF7a86L86LctGctT2374AY.1020.00061
ORF7a86L86LctGctA574AY.1020.000133
ORF7a86L86LCtgTtg4060B.10.000366
ORF7a86L86LctGctT1560B.10.000137
ORF7a86L86LctGctA560B.10.000046
ORF7a86L86LCtgTtg4452P.1.150.010223
ORF7a86L86LctGctT852P.1.150.001859
ORF7a86L86LCtgTtg4949AY.4.30.041246
ORF7a86L86LctGctT3448AY.120.10.010915
ORF7a86L86LCtgTtg1448AY.120.10.004494
ORF7a86L86LCtgTtg4444B.1.1.4640.064801
ORF7a86L86LctGctT2542P.10.000394
ORF7a86L86LCtgTtg1442P.10.000221
ORF7a86L86LctGctA342P.10.000047
ORF7a86L86LCtgTtg2937B.1.1770.000382
ORF7a86L86LctGctT737B.1.1770.000092
ORF7a86L86LctGctA137B.1.1770.000013
ORF7a86L86LctGctT3636B.1.177.820.017184
ORF7a86L86LCtgTtg1734AY.4.20.000369
ORF7a86L86LctGctT1634AY.4.20.000347
ORF7a86L86LctGctA134AY.4.20.000022
ORF7a86L86LctGctT1633B.1.10.00029
ORF7a86L86LctGctA733B.1.10.000127
ORF7a86L86LCtgTtg533B.1.10.000091
ORF7a86L86LctGctC533B.1.10.000091
ORF7a86L86LctGctT3232B.1.160.130.888889
ORF7a86L86LCtgTtg1430AY.260.000396
ORF7a86L86LctGctC930AY.260.000255
ORF7a86L86LctGctA430AY.260.000113
ORF7a86L86LctGctT330AY.260.000085
ORF7a86L86LCtgTtg2930B.1.2580.00193
ORF7a86L86LctGctT130B.1.2580.000067
ORF7a86L86LctGctA2128B.1.4270.00106
ORF7a86L86LCtgTtg428B.1.4270.000202
ORF7a86L86LctGctT328B.1.4270.000151
ORF7a86L86LCtgTtg1826AY.290.000284
ORF7a86L86LctGctT726AY.290.00011
ORF7a86L86LctGctA126AY.290.000016
ORF7a86L86LCtgTtg2324B.1.4290.000541
ORF7a86L86LctGctT124B.1.4290.000024
ORF7a86L86LctGctT2022AY.330.001336
ORF7a86L86LCtgTtg222AY.330.000134
ORF7a86L86LCtgTtg1721AY.200.000661
ORF7a86L86LctGctT321AY.200.000117
ORF7a86L86LctGctA121AY.200.000039
ORF7a86L86LCtgTtg920AY.1190.000318
ORF7a86L86LctGctA820AY.1190.000282
ORF7a86L86LctGctT320AY.1190.000106
ORF7a86L86LCtgTtg1017AY.1000.00046
ORF7a86L86LctGctT617AY.1000.000276
ORF7a86L86LctGctA117AY.1000.000046
ORF7a86L86LCtgTtg1417AY.7.10.001578
ORF7a86L86LctGctT217AY.7.10.000225
ORF7a86L86LctGctA117AY.7.10.000113
ORF7a86L86LctGctT1417B.1.1.5190.000556
ORF7a86L86LCtgTtg217B.1.1.5190.000079
ORF7a86L86LctGctA117B.1.1.5190.00004
ORF7a86L86LCtgTtg1517B.1.617.10.001934
ORF7a86L86LctGctT217B.1.617.10.000258
ORF7a86L86LCtgTtg816AY.390.000198
ORF7a86L86LctGctA416AY.390.000099
ORF7a86L86LctGctT416AY.390.000099
ORF7a86L86LCtgTtg1315AY.420.000523
ORF7a86L86LctGctT215AY.420.00008
ORF7a86L86LCtgTtg1015AY.470.000311
ORF7a86L86LctGctT515AY.470.000156
ORF7a86L86LctGctT715B.1.3510.000208
ORF7a86L86LCtgTtg615B.1.3510.000178
ORF7a86L86LctGctA215B.1.3510.000059
ORF7a86L86LCtgTtg1414AY.300.00554
ORF7a86L86LctGctA1314AY.530.003738
ORF7a86L86LctGctT114AY.530.000288
ORF7a86L86LCtgTtg1114AY.730.007319
ORF7a86L86LctGctT314AY.730.001996
ORF7a86L86LctGctT1314B.1.1.4340.004531
ORF7a86L86LCtgTtg114B.1.1.4340.000349
ORF7a86L86LCtgTtg714B.1.5260.000165
ORF7a86L86LctGctT514B.1.5260.000118
ORF7a86L86LctGctA114B.1.5260.000024
ORF7a86L86LCtGTtA114B.1.5260.000024
ORF7a86L86LCtgTtg1212AY.4.40.00491
ORF7a86L86LctGctT1212B.1.1.4200.012072
ORF7a86L86LCtgTtg811AY.460.000833
ORF7a86L86LctGctT311AY.460.000312
ORF7a86L86LctGctT910AE.80.004401
ORF7a86L86LctGctA110AE.80.000489
ORF7a86L86LCtgTtg710AY.50.000145
ORF7a86L86LctGctT210AY.50.000041
ORF7a86L86LctGctA110AY.50.000021
ORF7a86L86LctGctT810AY.60.000329
ORF7a86L86LCtgTtg210AY.60.000082
ORF7a86L86LCtgTtg59AY.230.000349
ORF7a86L86LctGctT39AY.230.000209
ORF7a86L86LctGctA19AY.230.00007
ORF7a86L86LCtgTtg89AY.750.000448
ORF7a86L86LctGctT19AY.750.000056
ORF7a86L86LctGctT79AY.9.20.000257
ORF7a86L86LCtgTtg19AY.9.20.000037
ORF7a86L86LctGctA19AY.9.20.000037
ORF7a86L86LctGctT99B.1.1460.038136
ORF7a86L86LctGctT78AY.1210.000947
ORF7a86L86LCtgTtg18AY.1210.000135
ORF7a86L86LCtgTtg78AY.3.10.000597
ORF7a86L86LctGctA18AY.3.10.000085
ORF7a86L86LCtgTtg68AY.720.008163
ORF7a86L86LctGctT18AY.720.001361
ORF7a86L86LctGctA18AY.720.001361
ORF7a86L86LctGctT58B.1.5960.000436
ORF7a86L86LCtgTtg38B.1.5960.000261
ORF7a86L86LCtgTtg67AY.4.50.000645
ORF7a86L86LctGctA17AY.4.50.000107
ORF7a86L86LctGctT57P.1.140.000239
ORF7a86L86LCtgTtg27P.1.140.000096
ORF7a86L86LCtgTtg57P.20.000933
ORF7a86L86LctGctT27P.20.000373
ORF7a86L86LCtgTtg46AY.920.001149
ORF7a86L86LctGctA16AY.920.000287
ORF7a86L86LctGctT16AY.920.000287
ORF7a86L86LctGctT66B.1.2400.001293
ORF7a86L86LctGctT35AY.1170.000254
ORF7a86L86LCtgTtg25AY.1170.000169
ORF7a86L86LCtgTtg45AY.1180.000251
ORF7a86L86LctGctT15AY.1180.000063
ORF7a86L86LCtgTtg55AY.360.000741
ORF7a86L86LCtgTtg45AY.840.00175
ORF7a86L86LctGctA15AY.840.000437
ORF7a86L86LctGctA35B.1.2340.000396
ORF7a86L86LctGctT25B.1.2340.000264
ORF7a86L86LctGctT45R.10.00036
ORF7a86L86LctGctA15R.10.00009
ORF7a86L86LctGctA24AY.1160.000574
ORF7a86L86LctGctT14AY.1160.000287
ORF7a86L86LCtgTtg14AY.1160.000287
ORF7a86L86LctGctT24B.1.1600.000062
ORF7a86L86LCtgTtg24B.1.1600.000062
ORF7a86L86LCtgTtg44B.1.177.600.000874
ORF7a86L86LctGctT23AY.1060.00067
ORF7a86L86LCtgTtg13AY.1060.000335
ORF7a86L86LCtgTtg23AY.130.000322
ORF7a86L86LctGctA13AY.130.000161
ORF7a86L86LCtgTtg33AY.270.000194
ORF7a86L86LctGctA13AY.450.000122
ORF7a86L86LctGctT13AY.450.000122
ORF7a86L86LCtgTtg13AY.450.000122
ORF7a86L86LctGctT23AY.46.60.000144
ORF7a86L86LctGctA13AY.46.60.000072
ORF7a86L86LCtgTtg23AY.75.10.000361
ORF7a86L86LctGctA13AY.75.10.00018
ORF7a86L86LctGctA13AY.980.000079
ORF7a86L86LCtgTtg13AY.980.000079
ORF7a86L86LctGctT13AY.980.000079
ORF7a86L86LCtgTtg33B.1.1.630.001157
ORF7a86L86LctGctA33B.1.177.570.000843
ORF7a86L86LctGctT33B.1.2210.000213
ORF7a86L86LctGctA33B.1.3690.000856
ORF7a86L86LCtgTtg33B.1.4530.009709
ORF7a86L86LctGctT23B.1.6210.000177
ORF7a86L86LCtgTtg13B.1.6210.000089
ORF7a86L86LCtgTtg33Q.10.000379
ORF7a86L86LCtgTtg22AH.20.024096
ORF7a86L86LCtgTtg22AY.1110.000366
ORF7a86L86LctGctT12AY.1200.000037
ORF7a86L86LCtgTtg12AY.1200.000037
ORF7a86L86LCtgTtg22AY.4.2.10.000298
ORF7a86L86LctGctT12AY.5.40.000277
ORF7a86L86LCtgTtg12AY.5.40.000277
ORF7a86L86LCtgTtg12AY.610.000105
ORF7a86L86LctGctT12AY.610.000105
ORF7a86L86LctGctT22AY.620.000871
ORF7a86L86LctGctA22AY.640.00119
ORF7a86L86LctGctT12AY.850.000427
ORF7a86L86LctGctA12AY.850.000427
ORF7a86L86LCtgTtg22AY.890.009804
ORF7a86L86LctGctT22AY.98.10.000097
ORF7a86L86LCtgTtg22B.1.1.1210.004854
ORF7a86L86LctGctT22B.1.1.1890.003026
ORF7a86L86LCtgTtg12B.1.1.2220.000204
ORF7a86L86LctGctT12B.1.1.2220.000204
ORF7a86L86LCtgTtg22B.1.1.3690.000892
ORF7a86L86LctGctT22B.1.1.3720.001377
ORF7a86L86LCtgTtg22B.1.160.160.001859
ORF7a86L86LCtgTtg22B.1.177.670.015267
ORF7a86L86LCtgTtg12B.1.2320.000537
ORF7a86L86LctGctT12B.1.2320.000537
ORF7a86L86LCtgTtg22B.1.2390.002442
ORF7a86L86LctGctT12B.1.2430.00007
ORF7a86L86LCtgTtg12B.1.2430.00007
ORF7a86L86LctGctA12B.1.258.170.000104
ORF7a86L86LCtgTtg12B.1.258.170.000104
ORF7a86L86LCtgTtg22B.1.351.20.000605
ORF7a86L86LCtgTtg22B.1.36.310.003503
ORF7a86L86LctGctT22B.1.4040.002604
ORF7a86L86LctGctT22B.1.466.20.000782
ORF7a86L86LCtgTtg12B.1.5250.000113
ORF7a86L86LctGctT12B.1.5250.000113
ORF7a86L86LctGctA12B.1.5750.000303
ORF7a86L86LCtgTtg12B.1.5750.000303
ORF7a86L86LCtgTtg22N.40.008511
ORF7a86L86LCtgTtg22W.40.002703
ORF7a86L86LctGctT110.055556
ORF7a86L86LCtgTtg11AY.100.00053
ORF7a86L86LctGctA11AY.1040.001984
ORF7a86L86LCtgTtg11AY.1070.000466
ORF7a86L86LCtgTtg11AY.1130.000142
ORF7a86L86LCtgTtg11AY.1140.000231
ORF7a86L86LCtgTtg11AY.116.10.000311
ORF7a86L86LCtgTtg11AY.120.000316
ORF7a86L86LCtgTtg11AY.160.00038
ORF7a86L86LCtgTtg11AY.29.10.000221
ORF7a86L86LCtgTtg11AY.340.000097
ORF7a86L86LctGctC11AY.34.10.00051
ORF7a86L86LctGctT11AY.39.10.00004
ORF7a86L86LCtgTtg11AY.5.10.003759
ORF7a86L86LCtgTtg11AY.5.30.000337
ORF7a86L86LCtgTtg11AY.510.000909
ORF7a86L86LctGctA11AY.520.000814
ORF7a86L86LCtgTtg11AY.540.000095
ORF7a86L86LctGctT11AY.590.00053
ORF7a86L86LCtgTtg11AY.70.000196
ORF7a86L86LctGctT11AY.770.001127
ORF7a86L86LctGctA11AY.820.001357
ORF7a86L86LCtgTtg11AY.90.000068
ORF7a86L86LctGctA11AY.99.20.000092
ORF7a86L86LctGctA11B0.000128
ORF7a86L86LCtgTtg11B.1.1.100.001115
ORF7a86L86LCtgTtg11B.1.1.2200.001859
ORF7a86L86LCtgTtg11B.1.1.2410.00207
ORF7a86L86LCtgTtg11B.1.1.2570.009709
ORF7a86L86LCtgTtg11B.1.1.2910.000742
ORF7a86L86LCtgTtg11B.1.1.2940.001266
ORF7a86L86LCtgTtg11B.1.1.3060.000438
ORF7a86L86LctGctT11B.1.1.3120.001912
ORF7a86L86LctGctT11B.1.1.3780.007299
ORF7a86L86LCtgTtg11B.1.1.3840.02381
ORF7a86L86LCtgTtg11B.1.1.4060.006494
ORF7a86L86LctGctA11B.1.1.520.012195
ORF7a86L86LCtgTtg11B.1.1280.000635
ORF7a86L86LctGctA11B.1.1470.000756
ORF7a86L86LCtgTtg11B.1.177.150.000631
ORF7a86L86LCtgTtg11B.1.177.330.001645
ORF7a86L86LCtgTtg11B.1.177.440.000519
ORF7a86L86LctGctA11B.1.177.630.002703
ORF7a86L86LctGctT11B.1.177.70.000165
ORF7a86L86LCtgTtg11B.1.1820.007246
ORF7a86L86LctGctT11B.1.230.006061
ORF7a86L86LctGctA11B.1.2410.000812
ORF7a86L86LCtgTtg11B.1.351.50.0006
ORF7a86L86LctGctT11B.1.360.000146
ORF7a86L86LctGctT11B.1.36.100.004785
ORF7a86L86LctGctA11B.1.36.170.000494
ORF7a86L86LctGctT11B.1.36.220.001208
ORF7a86L86LctGctT11B.1.36.290.000517
ORF7a86L86LctGctT11B.1.3670.000792
ORF7a86L86LCtgTtg11B.1.4160.001269
ORF7a86L86LctGctT11B.1.4700.001404
ORF7a86L86LctGctT11B.1.4800.002488
ORF7a86L86LctGctT11B.1.4970.000315
ORF7a86L86LctGctT11B.1.5170.000427
ORF7a86L86LctGctT11B.1.5650.00081
ORF7a86L86LctGctC11B.1.6190.000871
ORF7a86L86LctGctT11B.1.6230.000536
ORF7a86L86LCtgTtg11B.1.6250.002353
ORF7a86L86LCtgTtg11B.570.015152
ORF7a86L86LctGctT11C.37.10.002618
ORF7a86L86LctGctT11L.10.001905
ORF7a86L86LctGctT11P.70.004367
ORF7a86L86LctGctT11Q.20.000613
ORF7a86L86LCtgTtg11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.