CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L86E

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a86L86EnonsynCTGGAA31300.96774227649-27651
ORF7a86L86EnonsynCTgGAg3110.032258127649-27651

Details of the mutation L86E within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a86L86ECTGGAA3031All0.000006
ORF7a86L86ECTgGAg131All0
ORF7a86L86ECTGGAA1313B.1.177.210.000994
ORF7a86L86ECTGGAA44B.1.10.000073
ORF7a86L86ECTGGAA23B.10.000018
ORF7a86L86ECTgGAg13B.10.000009
ORF7a86L86ECTGGAA22B.1.3510.000059
ORF7a86L86ECTGGAA22B.1.36.10.002281
ORF7a86L86ECTGGAA11B.1.1.1890.001513
ORF7a86L86ECTGGAA11B.1.1.2820.011628
ORF7a86L86ECTGGAA11B.1.1.3050.003861
ORF7a86L86ECTGGAA11B.1.1770.000013
ORF7a86L86ECTGGAA11B.1.2420.018868
ORF7a86L86ECTGGAA11B.1.360.000146
ORF7a86L86ECTGGAA11B.1.4380.006536

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.