CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L5R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a5L5RnonsyncTtcGt1261230.9761927406-27408
ORF7a5L5RnonsyncTTcGG12620.01587327406-27408
ORF7a5L5RnonsyncTTcGA12610.0079365127406-27408

Details of the mutation L5R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a5L5RcTtcGt123126All0.000024
ORF7a5L5RcTTcGG2126All0
ORF7a5L5RcTTcGA1126All0
ORF7a5L5RcTtcGt99101B.1.1.70.000089
ORF7a5L5RcTTcGG2101B.1.1.70.000002
ORF7a5L5RcTtcGt33AY.260.000085
ORF7a5L5RcTtcGt33B.1.617.20.000011
ORF7a5L5RcTtcGt220.111111
ORF7a5L5RcTtcGt22AY.40.000003
ORF7a5L5RcTtcGt22B.1.10.000036
ORF7a5L5RcTtcGt22B.1.177.570.000562
ORF7a5L5RcTtcGt22B.1.20.000018
ORF7a5L5RcTtcGt22B.1.36.380.003284
ORF7a5L5RcTtcGt11AY.4.20.000022
ORF7a5L5RcTtcGt11B.10.000009
ORF7a5L5RcTtcGt11B.1.1.4850.016667
ORF7a5L5RcTTcGA11B.1.5760.000907
ORF7a5L5RcTtcGt11P.10.000016
ORF7a5L5RcTtcGt11P.1.170.000162
ORF7a5L5RcTtcGt11Q.80.000165