CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L5I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a5L5InonsynCttAtt5065040.99604727406-27408
ORF7a5L5InonsynCtTAtC50620.0039525727406-27408

Details of the mutation L5I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a5L5ICttAtt504506All0.000096
ORF7a5L5ICtTAtC2506All0
ORF7a5L5ICttAtt377377AY.40.000587
ORF7a5L5ICttAtt2222B.1.617.20.000083
ORF7a5L5ICttAtt2121B.1.1.70.000019
ORF7a5L5ICttAtt1414AY.1030.000087
ORF7a5L5ICttAtt88AY.440.000049
ORF7a5L5ICttAtt66AY.250.000036
ORF7a5L5ICttAtt44AY.390.000099
ORF7a5L5ICttAtt33AY.430.000013
ORF7a5L5ICttAtt33AY.7.20.001678
ORF7a5L5ICttAtt33B.1.1.4290.013825
ORF7a5L5ICttAtt33B.1.1770.00004
ORF7a5L5ICttAtt33B.1.4290.000071
ORF7a5L5ICttAtt33B.1.438.10.000322
ORF7a5L5ICttAtt220.111111
ORF7a5L5ICttAtt22AY.120.000632
ORF7a5L5ICttAtt22AY.75.10.000361
ORF7a5L5ICttAtt22B.10.000018
ORF7a5L5ICttAtt22B.1.20.000018
ORF7a5L5ICttAtt22B.1.2180.010309
ORF7a5L5ICtTAtC11AY.1010.00049
ORF7a5L5ICttAtt11AY.1020.000027
ORF7a5L5ICttAtt11AY.1170.000085
ORF7a5L5ICttAtt11AY.1190.000035
ORF7a5L5ICttAtt11AY.290.000016
ORF7a5L5ICttAtt11AY.30.00001
ORF7a5L5ICttAtt11AY.330.000067
ORF7a5L5ICttAtt11AY.5.30.000337
ORF7a5L5ICttAtt11AY.60.000041
ORF7a5L5ICttAtt11AY.610.000105
ORF7a5L5ICttAtt11B0.000128
ORF7a5L5ICttAtt11B.1.10.000018
ORF7a5L5ICttAtt11B.1.2400.000216
ORF7a5L5ICttAtt11B.1.2430.00007
ORF7a5L5ICttAtt11B.1.2580.000067
ORF7a5L5ICttAtt11B.1.258.170.000104
ORF7a5L5ICttAtt11B.1.258.40.003448
ORF7a5L5ICttAtt11B.1.3010.005917
ORF7a5L5ICttAtt11B.1.3980.002976
ORF7a5L5ICttAtt11B.1.5260.000024
ORF7a5L5ICttAtt11B.1.5760.000907
ORF7a5L5ICttAtt11B.1.5960.000087
ORF7a5L5ICttAtt11P.10.000016
ORF7a5L5ICtTAtC11P.1.20.001156