CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L5F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a5L5FnonsynCttTtt222722260.99955127406-27408
ORF7a5L5FnonsynCtTTtC222710.00044903527406-27408

Details of the mutation L5F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a5L5FCttTtt22262227All0.000426
ORF7a5L5FCtTTtC12227All0
ORF7a5L5FCttTtt750750B.1.1.70.000671
ORF7a5L5FCttTtt169169AY.40.000263
ORF7a5L5FCttTtt8383AY.1030.000515
ORF7a5L5FCttTtt6363B.1.617.20.000237
ORF7a5L5FCttTtt6161B.1.20.000537
ORF7a5L5FCttTtt4646AY.1020.00122
ORF7a5L5FCttTtt4545B.10.000412
ORF7a5L5FCttTtt4444B.1.4270.002222
ORF7a5L5FCttTtt4040B.1.4290.000941
ORF7a5L5FCttTtt3939B.1.5260.000917
ORF7a5L5FCttTtt3434AY.30.000338
ORF7a5L5FCttTtt3232AY.260.000906
ORF7a5L5FCttTtt3232B.1.3960.022583
ORF7a5L5FCttTtt3030P.10.000473
ORF7a5L5FCttTtt2929AY.750.001625
ORF7a5L5FCttTtt2727AY.250.000162
ORF7a5L5FCttTtt2727AY.360.004002
ORF7a5L5FCttTtt2525AY.440.000152
ORF7a5L5FCttTtt2525AZ.10.021683
ORF7a5L5FCttTtt2424B.1.1770.000316
ORF7a5L5FCttTtt2323B.1.10.000417
ORF7a5L5FCttTtt2323B.1.3510.000684
ORF7a5L5FCttTtt2121B.1.1.1890.03177
ORF7a5L5FCttTtt2020B.1.1.5190.000794
ORF7a5L5FCttTtt1919AY.1000.000874
ORF7a5L5FCttTtt1919B.1.3240.030498
ORF7a5L5FCttTtt1818AY.430.00008
ORF7a5L5FCttTtt1616B.1.2430.001113
ORF7a5L5FCttTtt1515AY.230.001046
ORF7a5L5FCttTtt1414AY.50.000289
ORF7a5L5FCttTtt1414B.1.1.2300.12844
ORF7a5L5FCttTtt1414B.1.2580.000932
ORF7a5L5FCttTtt1414C.370.001625
ORF7a5L5FCttTtt1212B.1.177.430.017725
ORF7a5L5FCttTtt1111AY.200.000428
ORF7a5L5FCttTtt1111AY.46.40.00181
ORF7a5L5FCttTtt1010B.1.177.810.001893
ORF7a5L5FCttTtt99B.1.1.4340.003137
ORF7a5L5FCttTtt99B.1.177.50.01118
ORF7a5L5FCttTtt88AY.1190.000282
ORF7a5L5FCttTtt88AY.290.000126
ORF7a5L5FCttTtt88AY.3.10.000682
ORF7a5L5FCttTtt88AY.390.000198
ORF7a5L5FCttTtt88AY.470.000249
ORF7a5L5FCttTtt88B.1.1600.00025
ORF7a5L5FCttTtt88B.1.3690.002282
ORF7a5L5FCttTtt88B.400.002914
ORF7a5L5FCttTtt66AY.570.003937
ORF7a5L5FCttTtt66B.1.1.1960.034286
ORF7a5L5FCttTtt66B.1.177.600.001311
ORF7a5L5FCttTtt66B.1.258.170.000624
ORF7a5L5FCttTtt66B.1.351.20.001815
ORF7a5L5FCttTtt66B.1.5960.000523
ORF7a5L5FCttTtt66R.10.00054
ORF7a5L5FCttTtt55AY.1060.001674
ORF7a5L5FCttTtt45AY.330.000267
ORF7a5L5FCtTTtC15AY.330.000067
ORF7a5L5FCttTtt55AY.4.2.10.000745
ORF7a5L5FCttTtt55AY.420.000201
ORF7a5L5FCttTtt55AY.980.000395
ORF7a5L5FCttTtt55B.1.1.1530.005476
ORF7a5L5FCttTtt55B.1.177.170.004105
ORF7a5L5FCttTtt44AY.1180.000251
ORF7a5L5FCttTtt44AY.350.000932
ORF7a5L5FCttTtt44B.1.9.40.02454
ORF7a5L5FCttTtt44D.20.0003
ORF7a5L5FCttTtt44P.1.140.000191
ORF7a5L5FCttTtt33AY.16.10.00141
ORF7a5L5FCttTtt33AY.370.000948
ORF7a5L5FCttTtt33B.1.1.10.00098
ORF7a5L5FCttTtt33B.1.1.3050.011583
ORF7a5L5FCttTtt33B.1.1.4120.022901
ORF7a5L5FCttTtt33B.1.177.570.000843
ORF7a5L5FCttTtt33B.1.177.70.000495
ORF7a5L5FCttTtt33B.1.2340.000396
ORF7a5L5FCttTtt33B.1.36.290.001552
ORF7a5L5FCttTtt33B.1.617.10.000387
ORF7a5L5FCttTtt22AY.540.000191
ORF7a5L5FCttTtt22AY.590.001059
ORF7a5L5FCttTtt22AY.60.000082
ORF7a5L5FCttTtt22AY.620.000871
ORF7a5L5FCttTtt22AY.740.000231
ORF7a5L5FCttTtt22AY.99.20.000184
ORF7a5L5FCttTtt22B.1.1.1410.004024
ORF7a5L5FCttTtt22B.1.1.2140.000111
ORF7a5L5FCttTtt22B.1.1.2840.000215
ORF7a5L5FCttTtt22B.1.1.3170.000823
ORF7a5L5FCttTtt22B.1.1.390.001019
ORF7a5L5FCttTtt22B.1.1.4320.002532
ORF7a5L5FCttTtt22B.1.110.30.001437
ORF7a5L5FCttTtt22B.1.160.140.004237
ORF7a5L5FCttTtt22B.1.160.230.009662
ORF7a5L5FCttTtt22B.1.177.860.000367
ORF7a5L5FCttTtt22B.1.177.90.002663
ORF7a5L5FCttTtt22B.1.3110.000549
ORF7a5L5FCttTtt22B.1.360.000292
ORF7a5L5FCttTtt22B.1.36.180.00084
ORF7a5L5FCttTtt22B.1.5160.003914
ORF7a5L5FCttTtt22B.1.5890.015152
ORF7a5L5FCttTtt22B.1.6210.000177
ORF7a5L5FCttTtt22C.36.30.001134
ORF7a5L5FCttTtt22Q.80.00033
ORF7a5L5FCttTtt11A.2.50.000499
ORF7a5L5FCttTtt11A.23.10.000704
ORF7a5L5FCttTtt11AU.10.001266
ORF7a5L5FCttTtt11AY.100.00053
ORF7a5L5FCttTtt11AY.1100.000113
ORF7a5L5FCttTtt11AY.1130.000142
ORF7a5L5FCttTtt11AY.1160.000287
ORF7a5L5FCttTtt11AY.1170.000085
ORF7a5L5FCttTtt11AY.120.000316
ORF7a5L5FCttTtt11AY.1200.000037
ORF7a5L5FCttTtt11AY.130.000161
ORF7a5L5FCttTtt11AY.220.002092
ORF7a5L5FCttTtt11AY.23.10.000417
ORF7a5L5FCttTtt11AY.270.000065
ORF7a5L5FCttTtt11AY.320.000532
ORF7a5L5FCttTtt11AY.340.000097
ORF7a5L5FCttTtt11AY.4.20.000022
ORF7a5L5FCttTtt11AY.460.000104
ORF7a5L5FCttTtt11AY.680.000274
ORF7a5L5FCttTtt11AY.690.000187
ORF7a5L5FCttTtt11AY.700.000209
ORF7a5L5FCttTtt11AY.75.10.00018
ORF7a5L5FCttTtt11AY.850.000427
ORF7a5L5FCttTtt11AY.990.001049
ORF7a5L5FCttTtt11B.1.1.1350.004695
ORF7a5L5FCttTtt11B.1.1.1980.001468
ORF7a5L5FCttTtt11B.1.1.250.000569
ORF7a5L5FCttTtt11B.1.1.2560.013699
ORF7a5L5FCttTtt11B.1.1.2730.006757
ORF7a5L5FCttTtt11B.1.1.280.000311
ORF7a5L5FCttTtt11B.1.1.2940.001266
ORF7a5L5FCttTtt11B.1.1.3110.000358
ORF7a5L5FCttTtt11B.1.1.3620.005618
ORF7a5L5FCttTtt11B.1.1.370.000193
ORF7a5L5FCttTtt11B.1.1.3720.000689
ORF7a5L5FCttTtt11B.1.1.410.006329
ORF7a5L5FCttTtt11B.1.1.500.000679
ORF7a5L5FCttTtt11B.1.1030.019231
ORF7a5L5FCttTtt11B.1.1400.018868
ORF7a5L5FCttTtt11B.1.160.100.008065
ORF7a5L5FCttTtt11B.1.160.300.002976
ORF7a5L5FCttTtt11B.1.177.100.000878
ORF7a5L5FCttTtt11B.1.177.730.000566
ORF7a5L5FCttTtt11B.1.177.750.001041
ORF7a5L5FCttTtt11B.1.214.20.0006
ORF7a5L5FCttTtt11B.1.2560.017241
ORF7a5L5FCttTtt11B.1.3460.001311
ORF7a5L5FCttTtt11B.1.36.170.000494
ORF7a5L5FCttTtt11B.1.3750.00082
ORF7a5L5FCttTtt11B.1.3980.002976
ORF7a5L5FCttTtt11B.1.4070.035714
ORF7a5L5FCttTtt11B.1.4130.004255
ORF7a5L5FCttTtt11B.1.438.10.000107
ORF7a5L5FCttTtt11B.1.466.20.000391
ORF7a5L5FCttTtt11B.1.4700.001404
ORF7a5L5FCttTtt11B.1.5090.000866
ORF7a5L5FCttTtt11B.1.5170.000427
ORF7a5L5FCttTtt11B.1.5400.009709
ORF7a5L5FCttTtt11B.1.5820.000491
ORF7a5L5FCttTtt11B.1.6340.003425
ORF7a5L5FCttTtt11B.30.000831
ORF7a5L5FCttTtt11C.160.00106
ORF7a5L5FCttTtt11C.230.005814
ORF7a5L5FCttTtt11N.60.007092
ORF7a5L5FCttTtt11P.1.10.000318
ORF7a5L5FCttTtt11P.1.150.000232
ORF7a5L5FCttTtt11P.1.170.000162
ORF7a5L5FCttTtt11P.50.013699
ORF7a5L5FCttTtt11Q.50.016949

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.