CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L56del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a56L56del1delctGct-27130.48148127559-27561
ORF7a56L56del1delCtg-tg27100.3703727559-27561
ORF7a56L56del1delCtG-tN2720.074074127559-27561
ORF7a56L56del1delCtGAt-2710.03703727559-27561
ORF7a56L56del1delCTG-NN2710.03703727559-27561

Details of the mutation L56del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a56L56del1ctGct-1327All0.000002
ORF7a56L56del1Ctg-tg1027All0.000002
ORF7a56L56del1CtG-tN227All0
ORF7a56L56del1CTG-NN127All0
ORF7a56L56del1CtGAt-127All0
ORF7a56L56del1ctGct-99B.1.617.20.000034
ORF7a56L56del1Ctg-tg24AY.40.000003
ORF7a56L56del1CTG-NN14AY.40.000002
ORF7a56L56del1CtG-tN14AY.40.000002
ORF7a56L56del1Ctg-tg33AY.1030.000019
ORF7a56L56del1Ctg-tg22AY.190.002281
ORF7a56L56del1Ctg-tg11AY.1180.000063
ORF7a56L56del1Ctg-tg11AY.250.000006
ORF7a56L56del1ctGct-11AY.420.00004
ORF7a56L56del1ctGct-11AY.430.000004
ORF7a56L56del1ctGct-11AY.440.000006
ORF7a56L56del1Ctg-tg11AY.790.001211
ORF7a56L56del1ctGct-11AY.920.000287
ORF7a56L56del1CtG-tN11B.1.1.70.000001
ORF7a56L56del1CtGAt-11B.1.177.210.000076