CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L56T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a56L56TnonsynCTGACA25190.7627559-27561
ORF7a56L56TnonsynCTGACT2540.1627559-27561
ORF7a56L56TnonsynCTGACC2510.0427559-27561
ORF7a56L56TnonsynCTgACg2510.0427559-27561

Details of the mutation L56T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a56L56TCTGACA1925All0.000004
ORF7a56L56TCTGACT425All0.000001
ORF7a56L56TCTGACC125All0
ORF7a56L56TCTgACg125All0
ORF7a56L56TCTGACA1415B.1.617.20.000053
ORF7a56L56TCTGACT115B.1.617.20.000004
ORF7a56L56TCTGACT24AY.250.000012
ORF7a56L56TCTGACA14AY.250.000006
ORF7a56L56TCTGACC14AY.250.000006
ORF7a56L56TCTGACA13B.1.3510.00003
ORF7a56L56TCTgACg13B.1.3510.00003
ORF7a56L56TCTGACT13B.1.3510.00003
ORF7a56L56TCTGACA11AY.1190.000035
ORF7a56L56TCTGACA11AY.3.10.000085
ORF7a56L56TCTGACA11B.1.1.70.000001