CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L49S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a49L49SnonsynCTaTCa23130.56521727538-27540
ORF7a49L49SnonsynCTATCT2360.2608727538-27540
ORF7a49L49SnonsynCTAAGC2310.043478327538-27540
ORF7a49L49SnonsynCTATCG2310.043478327538-27540
ORF7a49L49SnonsynCTAAGT2310.043478327538-27540
ORF7a49L49SnonsynCTATCC2310.043478327538-27540

Details of the mutation L49S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a49L49SCTaTCa1323All0.000002
ORF7a49L49SCTATCT623All0.000001
ORF7a49L49SCTAAGC123All0
ORF7a49L49SCTAAGT123All0
ORF7a49L49SCTATCG123All0
ORF7a49L49SCTATCC123All0
ORF7a49L49SCTaTCa48AY.250.000024
ORF7a49L49SCTATCT28AY.250.000012
ORF7a49L49SCTAAGT18AY.250.000006
ORF7a49L49SCTATCG18AY.250.000006
ORF7a49L49SCTaTCa48B.1.617.20.000015
ORF7a49L49SCTATCT28B.1.617.20.000008
ORF7a49L49SCTAAGC18B.1.617.20.000004
ORF7a49L49SCTATCC18B.1.617.20.000004
ORF7a49L49SCTATCT240.111111
ORF7a49L49SCTaTCa240.111111
ORF7a49L49SCTaTCa11AY.540.000095
ORF7a49L49SCTaTCa11B.1.177.630.002703
ORF7a49L49SCTaTCa11B.1.617.10.000129