CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L49L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a49L49LsynCtaTta331029690.89697927538-27540
ORF7a49L49LsynctActG33102500.075528727538-27540
ORF7a49L49LsynctActT3310660.019939627538-27540
ORF7a49L49LsynCtATtG3310150.0045317227538-27540
ORF7a49L49LsynctActC3310100.0030211527538-27540

Details of the mutation L49L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a49L49LCtaTta29693310All0.000568
ORF7a49L49LctActG2503310All0.000048
ORF7a49L49LctActT663310All0.000013
ORF7a49L49LCtATtG153310All0.000003
ORF7a49L49LctActC103310All0.000002
ORF7a49L49LCtaTta625636AY.40.000973
ORF7a49L49LctActG10636AY.40.000016
ORF7a49L49LctActT1636AY.40.000002
ORF7a49L49LCtaTta390390B.1.1.1210.946602
ORF7a49L49LCtaTta347373B.1.617.20.001307
ORF7a49L49LctActG22373B.1.617.20.000083
ORF7a49L49LctActT2373B.1.617.20.000008
ORF7a49L49LCtATtG2373B.1.617.20.000008
ORF7a49L49LCtaTta289289AY.260.008182
ORF7a49L49LCtaTta113215B.1.1.70.000101
ORF7a49L49LctActG96215B.1.1.70.000086
ORF7a49L49LctActC4215B.1.1.70.000004
ORF7a49L49LctActT2215B.1.1.70.000002
ORF7a49L49LCtaTta189192AY.1030.001174
ORF7a49L49LctActT3192AY.1030.000019
ORF7a49L49LCtaTta152155AY.440.000925
ORF7a49L49LctActT2155AY.440.000012
ORF7a49L49LctActG1155AY.440.000006
ORF7a49L49LCtaTta137137AY.75.10.024702
ORF7a49L49LCtaTta7483AY.250.000445
ORF7a49L49LctActT583AY.250.00003
ORF7a49L49LctActC283AY.250.000012
ORF7a49L49LCtATtG283AY.250.000012
ORF7a49L49LCtaTta7072AY.430.00031
ORF7a49L49LctActG272AY.430.000009
ORF7a49L49LCtaTta5959AY.1110.010806
ORF7a49L49LCtaTta3545B.1.20.000308
ORF7a49L49LctActG945B.1.20.000079
ORF7a49L49LctActT145B.1.20.000009
ORF7a49L49LCtaTta4243AY.30.000418
ORF7a49L49LctActG143AY.30.00001
ORF7a49L49LctActG2031B.1.1.5190.000794
ORF7a49L49LCtaTta1131B.1.1.5190.000437
ORF7a49L49LCtaTta2629AY.1020.000689
ORF7a49L49LctActG129AY.1020.000027
ORF7a49L49LctActT129AY.1020.000027
ORF7a49L49LctActC129AY.1020.000027
ORF7a49L49LCtaTta2727B.1.1.1760.011863
ORF7a49L49LctActT2424B.1.177.40.005065
ORF7a49L49LCtaTta2121AY.9.20.000771
ORF7a49L49LCtaTta1116B.10.000101
ORF7a49L49LctActG416B.10.000037
ORF7a49L49LCtATtG116B.10.000009
ORF7a49L49LCtATtG1016B.1.177.210.000765
ORF7a49L49LctActT616B.1.177.210.000459
ORF7a49L49LCtaTta1515AY.610.001572
ORF7a49L49LCtaTta915B.1.10.000163
ORF7a49L49LctActG615B.1.10.000109
ORF7a49L49LctActG1215D.20.0009
ORF7a49L49LCtaTta315D.20.000225
ORF7a49L49LCtaTta1414AY.1180.000877
ORF7a49L49LctActG1014AY.50.000206
ORF7a49L49LCtaTta414AY.50.000083
ORF7a49L49LCtaTta1313AY.230.000907
ORF7a49L49LCtaTta1212AY.680.003285
ORF7a49L49LCtaTta1111AY.160.004176
ORF7a49L49LCtaTta1111AY.4.20.000239
ORF7a49L49LCtaTta1111B.1.1.370.002122
ORF7a49L49LCtaTta810AY.470.000249
ORF7a49L49LctActG210AY.470.000062
ORF7a49L49LCtaTta1010C.160.010604
ORF7a49L49LctActG610P.10.000095
ORF7a49L49LCtaTta410P.10.000063
ORF7a49L49LCtaTta99AY.570.005906
ORF7a49L49LCtaTta89B.1.1770.000105
ORF7a49L49LctActC19B.1.1770.000013
ORF7a49L49LCtaTta88AY.290.000126
ORF7a49L49LCtaTta77AY.1100.000789
ORF7a49L49LCtaTta77AY.1190.000247
ORF7a49L49LCtaTta67AY.330.000401
ORF7a49L49LctActG17AY.330.000067
ORF7a49L49LctActT77B.1.1.390.003568
ORF7a49L49LCtaTta77B.1.617.10.000903
ORF7a49L49LCtaTta66AY.390.000148
ORF7a49L49LCtaTta66AY.710.00285
ORF7a49L49LCtaTta66B.1.177.810.001136
ORF7a49L49LCtaTta66B.1.5260.000141
ORF7a49L49LctActG66Q.10.000758
ORF7a49L49LCtaTta55AY.270.000324
ORF7a49L49LCtaTta45AY.360.000593
ORF7a49L49LctActG15AY.360.000148
ORF7a49L49LCtaTta55AY.70.00098
ORF7a49L49LctActG25AY.750.000112
ORF7a49L49LCtaTta25AY.750.000112
ORF7a49L49LctActC15AY.750.000056
ORF7a49L49LCtaTta55B.1.466.20.001956
ORF7a49L49LctActG55P.20.000933
ORF7a49L49LCtaTta240.111111
ORF7a49L49LctActT240.111111
ORF7a49L49LctActT34AY.1160.00086
ORF7a49L49LCtaTta14AY.1160.000287
ORF7a49L49LCtaTta44AY.1200.000149
ORF7a49L49LCtaTta44AY.140.000352
ORF7a49L49LCtaTta44AY.46.60.000289
ORF7a49L49LCtaTta44AY.60.000165
ORF7a49L49LCtaTta44AY.840.00175
ORF7a49L49LCtaTta44B.1.1600.000125
ORF7a49L49LCtaTta44B.1.2340.000528
ORF7a49L49LCtaTta24B.1.3510.000059
ORF7a49L49LctActT14B.1.3510.00003
ORF7a49L49LctActG14B.1.3510.00003
ORF7a49L49LCtaTta34B.1.4290.000071
ORF7a49L49LctActG14B.1.4290.000024
ORF7a49L49LctActG23AY.1000.000092
ORF7a49L49LCtaTta13AY.1000.000046
ORF7a49L49LctActG23AY.1170.000169
ORF7a49L49LCtaTta13AY.1170.000085
ORF7a49L49LctActG33AY.130.000483
ORF7a49L49LCtaTta33AY.3.10.000256
ORF7a49L49LctActG33AY.39.10.000119
ORF7a49L49LCtaTta33AY.420.000121
ORF7a49L49LCtaTta13AY.450.000122
ORF7a49L49LctActT13AY.450.000122
ORF7a49L49LctActG13AY.450.000122
ORF7a49L49LCtaTta23AY.460.000208
ORF7a49L49LctActT13AY.460.000104
ORF7a49L49LCtaTta33AY.620.001307
ORF7a49L49LctActG13B.1.1.2160.00089
ORF7a49L49LCtaTta13B.1.1.2160.00089
ORF7a49L49LctActC13B.1.1.2160.00089
ORF7a49L49LCtaTta33B.1.6200.002838
ORF7a49L49LctActG23P.1.140.000096
ORF7a49L49LCtaTta13P.1.140.000048
ORF7a49L49LCtaTta22AY.1060.00067
ORF7a49L49LCtaTta22AY.1070.000932
ORF7a49L49LctActG22AY.190.002281
ORF7a49L49LCtaTta22AY.200.000078
ORF7a49L49LCtaTta22AY.300.000791
ORF7a49L49LCtaTta22AY.4.50.000215
ORF7a49L49LCtaTta22AY.46.20.001271
ORF7a49L49LCtaTta22AY.530.000575
ORF7a49L49LCtaTta22AY.7.10.000225
ORF7a49L49LCtaTta22AY.700.000417
ORF7a49L49LctActT22AY.770.002255
ORF7a49L49LCtaTta22AY.98.10.000097
ORF7a49L49LCtaTta22AY.99.20.000184
ORF7a49L49LctActG12B.1.1.280.000311
ORF7a49L49LCtaTta12B.1.1.280.000311
ORF7a49L49LCtaTta12B.1.1.330.000421
ORF7a49L49LctActG12B.1.1.330.000421
ORF7a49L49LCtaTta22B.1.1.4130.013793
ORF7a49L49LCtaTta22B.1.1.700.000682
ORF7a49L49LctActG22B.1.160.250.022222
ORF7a49L49LCtaTta12B.1.360.000146
ORF7a49L49LctActG12B.1.360.000146
ORF7a49L49LCtaTta22B.1.5960.000174
ORF7a49L49LCtaTta12B.1.6370.000073
ORF7a49L49LctActG12B.1.6370.000073
ORF7a49L49LCtaTta22P.1.150.000465
ORF7a49L49LCtaTta22P.1.40.001953
ORF7a49L49LctActG11A.10.000282
ORF7a49L49LctActT11A.30.002096
ORF7a49L49LCtaTta11AD.20.000219
ORF7a49L49LCtaTta11AY.1050.000643
ORF7a49L49LCtaTta11AY.1090.00074
ORF7a49L49LCtaTta11AY.1130.000142
ORF7a49L49LCtaTta11AY.120.20.001285
ORF7a49L49LCtaTta11AY.1210.000135
ORF7a49L49LCtaTta11AY.20.000356
ORF7a49L49LctActT11AY.29.10.000221
ORF7a49L49LctActG11AY.320.000532
ORF7a49L49LCtaTta11AY.370.000316
ORF7a49L49LCtaTta11AY.4.2.10.000149
ORF7a49L49LCtaTta11AY.46.30.000934
ORF7a49L49LCtaTta11AY.540.000095
ORF7a49L49LCtaTta11AY.670.000464
ORF7a49L49LCtaTta11AY.740.000116
ORF7a49L49LctActG11AY.780.001541
ORF7a49L49LCtaTta11AY.900.000684
ORF7a49L49LCtaTta11AY.920.000287
ORF7a49L49LCtaTta11AY.930.000273
ORF7a49L49LCtaTta11AY.980.000079
ORF7a49L49LCtaTta11B.1.1.10.000327
ORF7a49L49LCtaTta11B.1.1.1170.009709
ORF7a49L49LCtaTta11B.1.1.1740.003378
ORF7a49L49LCtaTta11B.1.1.1920.002309
ORF7a49L49LCtaTta11B.1.1.2220.000204
ORF7a49L49LCtaTta11B.1.1.3110.000358
ORF7a49L49LCtaTta11B.1.1.3180.000302
ORF7a49L49LctActG11B.1.1.3480.000796
ORF7a49L49LctActG11B.1.1.500.000679
ORF7a49L49LCtaTta11B.1.1.890.006061
ORF7a49L49LCtaTta11B.1.177.860.000183
ORF7a49L49LctActG11B.1.2220.001692
ORF7a49L49LCtaTta11B.1.2410.000812
ORF7a49L49LCtaTta11B.1.258.90.005
ORF7a49L49LCtaTta11B.1.2980.002114
ORF7a49L49LctActG11B.1.36.290.000517
ORF7a49L49LCtaTta11B.1.3890.001002
ORF7a49L49LCtaTta11B.1.416.10.001563
ORF7a49L49LCtaTta11B.1.4990.00105
ORF7a49L49LctActG11B.1.5250.000113
ORF7a49L49LCtaTta11B.1.575.10.002439
ORF7a49L49LCtaTta11B.1.6210.000089
ORF7a49L49LCtaTta11C.360.000911
ORF7a49L49LCtaTta11P.1.110.010204
ORF7a49L49LctActG11P.1.160.000374
ORF7a49L49LCtaTta11P.1.170.000162
ORF7a49L49LCtaTta11Q.80.000165