CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L116del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a116L116del2delCTc--c86770.89534927739-27741
ORF7a116L116del2delcTCc--8660.069767427739-27741
ORF7a116L116del2delCTC--N8620.023255827739-27741
ORF7a116L116del2delCTC--T8610.011627927739-27741

Details of the mutation L116del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a116L116del2CTc--c7786All0.000015
ORF7a116L116del2cTCc--686All0.000001
ORF7a116L116del2CTC--N286All0
ORF7a116L116del2CTC--T186All0
ORF7a116L116del2CTc--c1313P.10.000205
ORF7a116L116del2CTc--c1212B.1.617.20.000045
ORF7a116L116del2CTc--c1010AY.40.000016
ORF7a116L116del2CTc--c67B.1.1.70.000005
ORF7a116L116del2cTCc--17B.1.1.70.000001
ORF7a116L116del2CTc--c55AY.540.000477
ORF7a116L116del2CTc--c44AY.140.000352
ORF7a116L116del2CTc--c44AY.200.000155
ORF7a116L116del2cTCc--34AY.250.000018
ORF7a116L116del2CTc--c14AY.250.000006
ORF7a116L116del2CTc--c44AY.80.002424
ORF7a116L116del2CTC--N23Q.30.00029
ORF7a116L116del2CTc--c13Q.30.000145
ORF7a116L116del2CTc--c22A.2.50.000998
ORF7a116L116del2CTc--c22AY.16.10.00094
ORF7a116L116del2CTc--c22AY.260.000057
ORF7a116L116del2cTCc--11AY.1030.000006
ORF7a116L116del2CTc--c11AY.1210.000135
ORF7a116L116del2CTc--c11AY.130.000161
ORF7a116L116del2CTc--c11AY.290.000016
ORF7a116L116del2CTc--c11AY.4.50.000107
ORF7a116L116del2CTc--c11AY.420.00004
ORF7a116L116del2cTCc--11AY.430.000004
ORF7a116L116del2CTc--c11AY.440.000006
ORF7a116L116del2CTc--c11AY.46.60.000072
ORF7a116L116del2CTc--c11AY.720.001361
ORF7a116L116del2CTc--c11B.1.10.000018
ORF7a116L116del2CTc--c11B.1.1.2140.000055
ORF7a116L116del2CTc--c11B.1.20.000009
ORF7a116L116del2CTC--T11B.1.214.20.0006