CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L116del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a116L116del1delctCct-1861440.77419427739-27741
ORF7a116L116del1delCtc-tc186360.19354827739-27741
ORF7a116L116del1delcTcc-c18630.01612927739-27741
ORF7a116L116del1delCtC-tT18620.010752727739-27741
ORF7a116L116del1delCtC-tN18610.0053763427739-27741

Details of the mutation L116del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a116L116del1ctCct-144186All0.000028
ORF7a116L116del1Ctc-tc36186All0.000007
ORF7a116L116del1cTcc-c3186All0.000001
ORF7a116L116del1CtC-tT2186All0
ORF7a116L116del1CtC-tN1186All0
ORF7a116L116del1ctCct-6381B.1.1.70.000056
ORF7a116L116del1Ctc-tc1881B.1.1.70.000016
ORF7a116L116del1ctCct-6163AY.40.000095
ORF7a116L116del1Ctc-tc263AY.40.000003
ORF7a116L116del1ctCct-45AY.430.000018
ORF7a116L116del1Ctc-tc15AY.430.000004
ORF7a116L116del1ctCct-24B.1.617.20.000008
ORF7a116L116del1Ctc-tc14B.1.617.20.000004
ORF7a116L116del1CtC-tT14B.1.617.20.000004
ORF7a116L116del1ctCct-23AY.250.000012
ORF7a116L116del1Ctc-tc13AY.250.000006
ORF7a116L116del1Ctc-tc23B.1.130.004751
ORF7a116L116del1CtC-tN13B.1.130.002375
ORF7a116L116del1ctCct-33B.1.6280.001057
ORF7a116L116del1ctCct-22AY.330.000134
ORF7a116L116del1Ctc-tc22B.1.617.10.000258
ORF7a116L116del1ctCct-22R.10.00018
ORF7a116L116del1ctCct-11AY.1020.000027
ORF7a116L116del1Ctc-tc11AY.160.00038
ORF7a116L116del1ctCct-11AY.200.000039
ORF7a116L116del1Ctc-tc11AY.240.000431
ORF7a116L116del1Ctc-tc11AY.280.00189
ORF7a116L116del1Ctc-tc11AY.290.000016
ORF7a116L116del1cTcc-c11AY.370.000316
ORF7a116L116del1Ctc-tc11AY.4.20.000022
ORF7a116L116del1cTcc-c11AY.4.40.000409
ORF7a116L116del1ctCct-11AY.50.000021
ORF7a116L116del1CtC-tT11AY.7.20.000559
ORF7a116L116del1Ctc-tc11AY.9.20.000037
ORF7a116L116del1cTcc-c11AY.940.000443
ORF7a116L116del1Ctc-tc11AY.99.20.000092
ORF7a116L116del1ctCct-11B.1.1.2140.000055
ORF7a116L116del1ctCct-11B.1.1.280.000311
ORF7a116L116del1Ctc-tc11B.1.3060.005714
ORF7a116L116del1Ctc-tc11B.1.5260.000024