CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = L102del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a102L102deldelCTT---94679467127697-27699

Details of the mutation L102del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a102L102delCTT---94679467All0.001811
ORF7a102L102delCTT---17641764B.1.1.70.001579
ORF7a102L102delCTT---11361136AY.39.1.10.823188
ORF7a102L102delCTT---877877AY.40.001365
ORF7a102L102delCTT---800800AY.250.004812
ORF7a102L102delCTT---570570B.1.617.20.002146
ORF7a102L102delCTT---337337AY.1020.008935
ORF7a102L102delCTT---292292AY.430.001294
ORF7a102L102delCTT---279279AY.39.10.011052
ORF7a102L102delCTT---259259AY.750.01451
ORF7a102L102delCTT---246246AY.440.001497
ORF7a102L102delCTT---195195AY.1030.001211
ORF7a102L102delCTT---179179AY.4.20.003882
ORF7a102L102delCTT---161161AY.30.001601
ORF7a102L102delCTT---112112AY.330.007479
ORF7a102L102delCTT---9797AY.390.002397
ORF7a102L102delCTT---8989B.10.000815
ORF7a102L102delCTT---7777P.1.100.020749
ORF7a102L102delCTT---7575B.1.20.00066
ORF7a102L102delCTT---7070P.10.001103
ORF7a102L102delCTT---6969AY.290.001088
ORF7a102L102delCTT---6969AY.460.007182
ORF7a102L102delCTT---6767AY.50.001383
ORF7a102L102delCTT---6363AY.46.40.010364
ORF7a102L102delCTT---5454B.1.6210.00478
ORF7a102L102delCTT---5252AY.1200.001933
ORF7a102L102delCTT---4747AY.260.001331
ORF7a102L102delCTT---4747B.1.1770.000619
ORF7a102L102delCTT---4444B.1.1.5190.001747
ORF7a102L102delCTT---4343B.1.5260.001011
ORF7a102L102delCTT---4040AY.470.001244
ORF7a102L102delCTT---3939AY.70.007644
ORF7a102L102delCTT---3737AY.1180.002318
ORF7a102L102delCTT---3535AY.360.005187
ORF7a102L102delCTT---3434AY.740.003932
ORF7a102L102delCTT---3434B.1.10.000617
ORF7a102L102delCTT---2727AY.530.007763
ORF7a102L102delCTT---2626AY.1190.000918
ORF7a102L102delCTT---2525AY.1000.00115
ORF7a102L102delCTT---2525AY.420.001006
ORF7a102L102delCTT---2222B.1.1.2140.00122
ORF7a102L102delCTT---2222B.1.4270.001111
ORF7a102L102delCTT---2121AY.9.10.001758
ORF7a102L102delCTT---2020AY.7.20.011186
ORF7a102L102delCTT---2020B.1.36.390.044346
ORF7a102L102delCTT---1919AY.90.001284
ORF7a102L102delCTT---1818B.1.3510.000535
ORF7a102L102delCTT---1717AY.1210.0023
ORF7a102L102delCTT---1616AY.46.10.016427
ORF7a102L102delCTT---1515AY.340.001454
ORF7a102L102delCTT---1414AY.9.20.000514
ORF7a102L102delCTT---1414B.1.1.370.0027
ORF7a102L102delCTT---1313AY.1130.001851
ORF7a102L102delCTT---1313AY.60.000535
ORF7a102L102delCTT---1313AY.98.10.00063
ORF7a102L102delCTT---1313AY.99.20.001198
ORF7a102L102delCTT---1313B.1.1600.000405
ORF7a102L102delCTT---1313B.1.177.620.015495
ORF7a102L102delCTT---1313C.370.001509
ORF7a102L102delCTT---1212AY.1110.002198
ORF7a102L102delCTT---1212AY.120.10.003852
ORF7a102L102delCTT---1212AY.850.005126
ORF7a102L102delCTT---1212B.1.6370.000877
ORF7a102L102delCTT---1111AY.910.008035
ORF7a102L102delCTT---1010AY.450.001217
ORF7a102L102delCTT---1010B.1.2340.001319
ORF7a102L102delCTT---1010B.1.2430.000696
ORF7a102L102delCTT---99AY.160.003417
ORF7a102L102delCTT---99AY.230.000628
ORF7a102L102delCTT---99AY.3.10.000767
ORF7a102L102delCTT---99AY.46.60.00065
ORF7a102L102delCTT---99B.1.4290.000212
ORF7a102L102delCTT---88AY.200.000311
ORF7a102L102delCTT---88B0.001022
ORF7a102L102delCTT---88B.1.1.2840.000859
ORF7a102L102delCTT---88B.1.1.3180.002414
ORF7a102L102delCTT---77AY.1170.000592
ORF7a102L102delCTT---77AY.29.10.001544
ORF7a102L102delCTT---77AY.540.000667
ORF7a102L102delCTT---77AY.860.005809
ORF7a102L102delCTT---77B.1.160.160.006506
ORF7a102L102delCTT---77B.1.2210.000497
ORF7a102L102delCTT---77B.1.2400.001509
ORF7a102L102delCTT---77B.1.5250.000792
ORF7a102L102delCTT---77D.20.000525
ORF7a102L102delCTT---66AD.20.001314
ORF7a102L102delCTT---66AY.140.000528
ORF7a102L102delCTT---66AY.190.006842
ORF7a102L102delCTT---66AY.270.000388
ORF7a102L102delCTT---66AY.46.50.00119
ORF7a102L102delCTT---66AY.680.001642
ORF7a102L102delCTT---66AY.980.000474
ORF7a102L102delCTT---66B.1.2580.000399
ORF7a102L102delCTT---66B.1.4220.004874
ORF7a102L102delCTT---66B.1.617.10.000774
ORF7a102L102delCTT---66B.1.80.011834
ORF7a102L102delCTT---66P.1.10.001906
ORF7a102L102delCTT---66P.1.150.001394
ORF7a102L102delCTT---66Q.40.002729
ORF7a102L102delCTT---55AY.300.001979
ORF7a102L102delCTT---55AY.4.50.000537
ORF7a102L102delCTT---55AY.790.006053
ORF7a102L102delCTT---55B.1.1.4860.007886
ORF7a102L102delCTT---55B.1.177.600.001092
ORF7a102L102delCTT---55B.1.177.70.000824
ORF7a102L102delCTT---55B.1.5960.000436
ORF7a102L102delCTT---55P.1.140.000239
ORF7a102L102delCTT---55P.20.000933
ORF7a102L102delCTT---44AY.1050.002572
ORF7a102L102delCTT---44AY.120.001264
ORF7a102L102delCTT---44AY.130.000644
ORF7a102L102delCTT---44AY.210.00759
ORF7a102L102delCTT---44AY.350.000932
ORF7a102L102delCTT---44AY.5.30.00135
ORF7a102L102delCTT---44AY.7.10.000451
ORF7a102L102delCTT---44AY.730.002661
ORF7a102L102delCTT---44B.1.177.860.000734
ORF7a102L102delCTT---44B.1.258.110.001585
ORF7a102L102delCTT---44B.1.258.170.000416
ORF7a102L102delCTT---44B.1.2870.121212
ORF7a102L102delCTT---44B.1.6280.001409
ORF7a102L102delCTT---44N.70.117647
ORF7a102L102delCTT---44P.1.170.000647
ORF7a102L102delCTT---44Q.10.000505
ORF7a102L102delCTT---44Q.80.00066
ORF7a102L102delCTT---33AY.1080.003308
ORF7a102L102delCTT---33AY.1160.00086
ORF7a102L102delCTT---33AY.240.001293
ORF7a102L102delCTT---33AY.370.000948
ORF7a102L102delCTT---33AY.46.20.001906
ORF7a102L102delCTT---33AY.610.000314
ORF7a102L102delCTT---33AY.640.001786
ORF7a102L102delCTT---33AY.75.10.000541
ORF7a102L102delCTT---33AY.990.003148
ORF7a102L102delCTT---33B.1.1.1700.003741
ORF7a102L102delCTT---33B.1.1.580.016129
ORF7a102L102delCTT---33B.1.130.007126
ORF7a102L102delCTT---33B.1.177.570.000843
ORF7a102L102delCTT---33B.1.3110.000824
ORF7a102L102delCTT---33B.1.351.20.000908
ORF7a102L102delCTT---33B.1.360.000438
ORF7a102L102delCTT---33B.1.36.170.001482
ORF7a102L102delCTT---33B.1.3890.003006
ORF7a102L102delCTT---33B.1.5750.00091
ORF7a102L102delCTT---33B.1.5950.000783
ORF7a102L102delCTT---33B.1.6260.017143
ORF7a102L102delCTT---33B.1.6340.010274
ORF7a102L102delCTT---33B.310.011194
ORF7a102L102delCTT---33Q.30.000435
ORF7a102L102delCTT---33R.10.00027
ORF7a102L102delCTT---220.111111
ORF7a102L102delCTT---22A.2.50.000998
ORF7a102L102delCTT---22A.280.005291
ORF7a102L102delCTT---22AY.100.00106
ORF7a102L102delCTT---22AY.1040.003968
ORF7a102L102delCTT---22AY.1060.00067
ORF7a102L102delCTT---22AY.1070.000932
ORF7a102L102delCTT---22AY.1090.001479
ORF7a102L102delCTT---22AY.1140.000462
ORF7a102L102delCTT---22AY.590.001059
ORF7a102L102delCTT---22AY.700.000417
ORF7a102L102delCTT---22AY.770.002255
ORF7a102L102delCTT---22AY.80.001212
ORF7a102L102delCTT---22AY.840.000875
ORF7a102L102delCTT---22AY.870.001665
ORF7a102L102delCTT---22AY.920.000575
ORF7a102L102delCTT---22AZ.60.016807
ORF7a102L102delCTT---22B.1.1.1550.142857
ORF7a102L102delCTT---22B.1.1.280.000622
ORF7a102L102delCTT---22B.1.1.3170.000823
ORF7a102L102delCTT---22B.1.1.330.000842
ORF7a102L102delCTT---22B.1.1.3480.001592
ORF7a102L102delCTT---22B.1.1.4490.045455
ORF7a102L102delCTT---22B.1.1.630.000772
ORF7a102L102delCTT---22B.1.177.120.000303
ORF7a102L102delCTT---22B.1.177.40.000422
ORF7a102L102delCTT---22B.1.177.800.003824
ORF7a102L102delCTT---22B.1.3060.011429
ORF7a102L102delCTT---22B.1.3500.005865
ORF7a102L102delCTT---22B.1.466.20.000782
ORF7a102L102delCTT---22B.1.6120.005305
ORF7a102L102delCTT---22B.1.621.10.001012
ORF7a102L102delCTT---22B.4.50.02381
ORF7a102L102delCTT---22P.1.70.000639
ORF7a102L102delCTT---11A0.000387
ORF7a102L102delCTT---11A.10.000282
ORF7a102L102delCTT---11A.2.20.001689
ORF7a102L102delCTT---11A.210.00277
ORF7a102L102delCTT---11A.230.010526
ORF7a102L102delCTT---11AH.30.003802
ORF7a102L102delCTT---11AW.10.003049
ORF7a102L102delCTT---11AY.110.001339
ORF7a102L102delCTT---11AY.320.000532
ORF7a102L102delCTT---11AY.34.10.00051
ORF7a102L102delCTT---11AY.380.000499
ORF7a102L102delCTT---11AY.480.000465
ORF7a102L102delCTT---11AY.5.40.000277
ORF7a102L102delCTT---11AY.510.000909
ORF7a102L102delCTT---11AY.580.000907
ORF7a102L102delCTT---11AY.600.000938
ORF7a102L102delCTT---11AY.620.000436
ORF7a102L102delCTT---11AY.690.000187
ORF7a102L102delCTT---11AY.720.001361
ORF7a102L102delCTT---11AY.830.001724
ORF7a102L102delCTT---11AY.880.000884
ORF7a102L102delCTT---11AY.930.000273
ORF7a102L102delCTT---11AY.960.002075
ORF7a102L102delCTT---11AZ.20.000821
ORF7a102L102delCTT---11B.1.1.1210.002427
ORF7a102L102delCTT---11B.1.1.1320.014925
ORF7a102L102delCTT---11B.1.1.1680.026316
ORF7a102L102delCTT---11B.1.1.1890.001513
ORF7a102L102delCTT---11B.1.1.2160.00089
ORF7a102L102delCTT---11B.1.1.2220.000204
ORF7a102L102delCTT---11B.1.1.2580.003257
ORF7a102L102delCTT---11B.1.1.2650.003155
ORF7a102L102delCTT---11B.1.1.2770.000759
ORF7a102L102delCTT---11B.1.1.2800.003086
ORF7a102L102delCTT---11B.1.1.2940.001266
ORF7a102L102delCTT---11B.1.1.3120.001912
ORF7a102L102delCTT---11B.1.1.3160.000925
ORF7a102L102delCTT---11B.1.1.3310.011628
ORF7a102L102delCTT---11B.1.1.3690.000446
ORF7a102L102delCTT---11B.1.1.3760.005952
ORF7a102L102delCTT---11B.1.1.3980.003226
ORF7a102L102delCTT---11B.1.1.4110.014706
ORF7a102L102delCTT---11B.1.1.4340.000349
ORF7a102L102delCTT---11B.1.1.4370.010417
ORF7a102L102delCTT---11B.1.1.4480.002033
ORF7a102L102delCTT---11B.1.1.700.000341
ORF7a102L102delCTT---11B.1.1150.021739
ORF7a102L102delCTT---11B.1.1260.001276
ORF7a102L102delCTT---11B.1.1570.002985
ORF7a102L102delCTT---11B.1.160.70.002079
ORF7a102L102delCTT---11B.1.177.160.000664
ORF7a102L102delCTT---11B.1.177.210.000076
ORF7a102L102delCTT---11B.1.177.430.001477
ORF7a102L102delCTT---11B.1.177.500.004695
ORF7a102L102delCTT---11B.1.177.540.000606
ORF7a102L102delCTT---11B.1.177.690.001484
ORF7a102L102delCTT---11B.1.214.20.0006
ORF7a102L102delCTT---11B.1.221.40.004167
ORF7a102L102delCTT---11B.1.2350.002519
ORF7a102L102delCTT---11B.1.258.90.005
ORF7a102L102delCTT---11B.1.2650.001271
ORF7a102L102delCTT---11B.1.3200.001245
ORF7a102L102delCTT---11B.1.351.30.000876
ORF7a102L102delCTT---11B.1.3560.001727
ORF7a102L102delCTT---11B.1.36.100.004785
ORF7a102L102delCTT---11B.1.36.180.00042
ORF7a102L102delCTT---11B.1.36.200.016949
ORF7a102L102delCTT---11B.1.36.290.000517
ORF7a102L102delCTT---11B.1.3620.001541
ORF7a102L102delCTT---11B.1.3710.001122
ORF7a102L102delCTT---11B.1.3750.00082
ORF7a102L102delCTT---11B.1.4090.000781
ORF7a102L102delCTT---11B.1.4160.001269
ORF7a102L102delCTT---11B.1.4590.004082
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ORF7a102L102delCTT---11B.1.4700.001404
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ORF7a102L102delCTT---11B.1.5170.000427
ORF7a102L102delCTT---11B.1.5270.003704
ORF7a102L102delCTT---11B.1.5670.003333
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ORF7a102L102delCTT---11B.1.6200.000946
ORF7a102L102delCTT---11B.1.6380.052632
ORF7a102L102delCTT---11B.120.00641
ORF7a102L102delCTT---11B.400.000364
ORF7a102L102delCTT---11C.360.000911
ORF7a102L102delCTT---11C.36.30.000567
ORF7a102L102delCTT---11N.50.001767
ORF7a102L102delCTT---11P.1.120.000484
ORF7a102L102delCTT---11P.1.160.000374
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ORF7a102L102delCTT---11U.30.003861
ORF7a102L102delCTT---11W.40.001351
ORF7a102L102delCTT---11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.