CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 47 | H47del | del | CAT | --- | 3238 | 3238 | 1 | 27532-27534 |
Details of the mutation H47del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 47 | H47del | CAT | --- | 3238 | 3238 | All | 0.000619 |
ORF7a | 47 | H47del | CAT | --- | 553 | 553 | B.1.1.7 | 0.000495 |
ORF7a | 47 | H47del | CAT | --- | 418 | 418 | AY.25 | 0.002514 |
ORF7a | 47 | H47del | CAT | --- | 288 | 288 | AY.4 | 0.000448 |
ORF7a | 47 | H47del | CAT | --- | 272 | 272 | B.1.617.2 | 0.001024 |
ORF7a | 47 | H47del | CAT | --- | 180 | 180 | B.1.177.21 | 0.013765 |
ORF7a | 47 | H47del | CAT | --- | 122 | 122 | AY.103 | 0.000758 |
ORF7a | 47 | H47del | CAT | --- | 104 | 104 | AY.3 | 0.001034 |
ORF7a | 47 | H47del | CAT | --- | 96 | 96 | AY.43 | 0.000425 |
ORF7a | 47 | H47del | CAT | --- | 75 | 75 | AY.26 | 0.002123 |
ORF7a | 47 | H47del | CAT | --- | 72 | 72 | AY.44 | 0.000438 |
ORF7a | 47 | H47del | CAT | --- | 63 | 63 | AY.100 | 0.002898 |
ORF7a | 47 | H47del | CAT | --- | 58 | 58 | AY.29 | 0.000915 |
ORF7a | 47 | H47del | CAT | --- | 52 | 52 | AY.47 | 0.001617 |
ORF7a | 47 | H47del | CAT | --- | 51 | 51 | B.1.2 | 0.000449 |
ORF7a | 47 | H47del | CAT | --- | 48 | 48 | AY.3.1 | 0.004092 |
ORF7a | 47 | H47del | CAT | --- | 46 | 46 | B.1 | 0.000421 |
ORF7a | 47 | H47del | CAT | --- | 45 | 45 | AY.39 | 0.001112 |
ORF7a | 47 | H47del | CAT | --- | 37 | 37 | B.1.1.284 | 0.003974 |
ORF7a | 47 | H47del | CAT | --- | 37 | 37 | B.1.621 | 0.003275 |
ORF7a | 47 | H47del | CAT | --- | 24 | 24 | B.1.1.214 | 0.001331 |
ORF7a | 47 | H47del | CAT | --- | 22 | 22 | P.1 | 0.000347 |
ORF7a | 47 | H47del | CAT | --- | 20 | 20 | AY.46.4 | 0.00329 |
ORF7a | 47 | H47del | CAT | --- | 19 | 19 | AY.42 | 0.000764 |
ORF7a | 47 | H47del | CAT | --- | 19 | 19 | AY.7.2 | 0.010626 |
ORF7a | 47 | H47del | CAT | --- | 19 | 19 | B.1.177 | 0.00025 |
ORF7a | 47 | H47del | CAT | --- | 18 | 18 | B.1.526 | 0.000423 |
ORF7a | 47 | H47del | CAT | --- | 16 | 16 | AY.119 | 0.000565 |
ORF7a | 47 | H47del | CAT | --- | 16 | 16 | C.37 | 0.001857 |
ORF7a | 47 | H47del | CAT | --- | 15 | 15 | AY.5 | 0.00031 |
ORF7a | 47 | H47del | CAT | --- | 15 | 15 | B.1.351 | 0.000446 |
ORF7a | 47 | H47del | CAT | --- | 14 | 14 | B.1.596 | 0.00122 |
ORF7a | 47 | H47del | CAT | --- | 14 | 14 | B.1.637 | 0.001023 |
ORF7a | 47 | H47del | CAT | --- | 13 | 13 | AY.20 | 0.000505 |
ORF7a | 47 | H47del | CAT | --- | 12 | 12 | AY.102 | 0.000318 |
ORF7a | 47 | H47del | CAT | --- | 12 | 12 | B.1.324 | 0.019262 |
ORF7a | 47 | H47del | CAT | --- | 11 | 11 | AY.120 | 0.000409 |
ORF7a | 47 | H47del | CAT | --- | 11 | 11 | AY.35 | 0.002564 |
ORF7a | 47 | H47del | CAT | --- | 11 | 11 | B.1.429 | 0.000259 |
ORF7a | 47 | H47del | CAT | --- | 10 | 10 | R.1 | 0.0009 |
ORF7a | 47 | H47del | CAT | --- | 9 | 9 | AY.34 | 0.000873 |
ORF7a | 47 | H47del | CAT | --- | 9 | 9 | AY.54 | 0.000858 |
ORF7a | 47 | H47del | CAT | --- | 9 | 9 | L.1 | 0.017143 |
ORF7a | 47 | H47del | CAT | --- | 8 | 8 | AY.120.1 | 0.002568 |
ORF7a | 47 | H47del | CAT | --- | 8 | 8 | AY.98.1 | 0.000387 |
ORF7a | 47 | H47del | CAT | --- | 8 | 8 | B.1.525 | 0.000905 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | AY.116 | 0.002007 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | AY.39.1 | 0.000277 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | AY.4.2 | 0.000152 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | B.1.160 | 0.000218 |
ORF7a | 47 | H47del | CAT | --- | 7 | 7 | P.1.15 | 0.001626 |
ORF7a | 47 | H47del | CAT | --- | 6 | 6 | AY.118 | 0.000376 |
ORF7a | 47 | H47del | CAT | --- | 6 | 6 | AY.23 | 0.000418 |
ORF7a | 47 | H47del | CAT | --- | 6 | 6 | B.1.234 | 0.000792 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | AY.45 | 0.000608 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | AY.61 | 0.000524 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | AY.9.1 | 0.000419 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | AY.9.2 | 0.000184 |
ORF7a | 47 | H47del | CAT | --- | 5 | 5 | B.1.1.56 | 0.089286 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.121 | 0.000541 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.75 | 0.000224 |
ORF7a | 47 | H47del | CAT | --- | 4 | 4 | AY.91 | 0.002922 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.107 | 0.001398 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.110 | 0.000338 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.29.1 | 0.000662 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.88 | 0.002653 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.92 | 0.000862 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | AY.99 | 0.003148 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | B.1.1.121 | 0.007282 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | B.1.1.25 | 0.001706 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 47 | H47del | CAT | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | A | 0.000774 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.14 | 0.000176 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.30 | 0.000791 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.4.3 | 0.001684 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.57 | 0.001312 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.66 | 0.002139 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.71 | 0.00095 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.177.43 | 0.002954 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.214.2 | 0.001199 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.375 | 0.001639 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.617.3 | 0.00597 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | B.1.621.1 | 0.001012 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | C.36.3 | 0.001134 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF7a | 47 | H47del | CAT | --- | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.38 | 0.000499 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.79 | 0.001211 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.8 | 0.000606 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B | 0.000128 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.1.522 | 0.017241 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.535 | 0.028571 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | B.55 | 0.00295 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | K.3 | 0.006173 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.13 | 0.000898 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 47 | H47del | CAT | --- | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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