CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = H47H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a47H47HsyncaTcaC15531553127532-27534

Details of the mutation H47H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a47H47HcaTcaC15531553All0.000297
ORF7a47H47HcaTcaC296296B.1.5510.381935
ORF7a47H47HcaTcaC216216B.1.1.1860.742268
ORF7a47H47HcaTcaC203203AY.40.000316
ORF7a47H47HcaTcaC147147AY.250.000884
ORF7a47H47HcaTcaC103103B.1.1.70.000092
ORF7a47H47HcaTcaC6767AY.440.000408
ORF7a47H47HcaTcaC6363B.1.617.20.000237
ORF7a47H47HcaTcaC5353AY.430.000235
ORF7a47H47HcaTcaC2222AY.260.000623
ORF7a47H47HcaTcaC2121B.10.000192
ORF7a47H47HcaTcaC2121B.1.20.000185
ORF7a47H47HcaTcaC2020C.370.002321
ORF7a47H47HcaTcaC1818AY.1030.000112
ORF7a47H47HcaTcaC1818B.1.5750.005461
ORF7a47H47HcaTcaC1313AY.230.000907
ORF7a47H47HcaTcaC1313B.1.1.330.005471
ORF7a47H47HcaTcaC1313B.1.1.5190.000516
ORF7a47H47HcaTcaC1212B.1.4990.012605
ORF7a47H47HcaTcaC1111AY.460.001145
ORF7a47H47HcaTcaC1111P.10.000173
ORF7a47H47HcaTcaC1010AY.39.10.000396
ORF7a47H47HcaTcaC88AY.1020.000212
ORF7a47H47HcaTcaC88B.1.4290.000188
ORF7a47H47HcaTcaC77B.1.1600.000218
ORF7a47H47HcaTcaC66AY.140.000528
ORF7a47H47HcaTcaC66AY.390.000148
ORF7a47H47HcaTcaC66B.1.10.000109
ORF7a47H47HcaTcaC66B.1.177.420.005367
ORF7a47H47HcaTcaC66R.10.00054
ORF7a47H47HcaTcaC55AY.290.000079
ORF7a47H47HcaTcaC55AY.30.00005
ORF7a47H47HcaTcaC55B.1.1.470.026738
ORF7a47H47HcaTcaC55B.1.1.5260.01773
ORF7a47H47HcaTcaC55Q.30.000725
ORF7a47H47HcaTcaC44AY.1190.000141
ORF7a47H47HcaTcaC44B.1.5960.000349
ORF7a47H47HcaTcaC44B.1.6090.001918
ORF7a47H47HcaTcaC33AY.200.000117
ORF7a47H47HcaTcaC33AY.3.10.000256
ORF7a47H47HcaTcaC33AY.750.000168
ORF7a47H47HcaTcaC33AY.9.10.000251
ORF7a47H47HcaTcaC33AY.980.000237
ORF7a47H47HcaTcaC33B.1.1.3970.006757
ORF7a47H47HcaTcaC33B.1.2580.0002
ORF7a47H47HcaTcaC33B.1.466.20.001174
ORF7a47H47HcaTcaC22AY.1000.000092
ORF7a47H47HcaTcaC22AY.29.10.000441
ORF7a47H47HcaTcaC22AY.4.20.000043
ORF7a47H47HcaTcaC22AY.470.000062
ORF7a47H47HcaTcaC22AY.60.000082
ORF7a47H47HcaTcaC22AY.880.001768
ORF7a47H47HcaTcaC22AY.90.000135
ORF7a47H47HcaTcaC22AY.98.10.000097
ORF7a47H47HcaTcaC22B.1.1.610.017544
ORF7a47H47HcaTcaC22B.1.1770.000026
ORF7a47H47HcaTcaC22B.1.258.170.000208
ORF7a47H47HcaTcaC22B.1.3110.000549
ORF7a47H47HcaTcaC22B.1.3230.041667
ORF7a47H47HcaTcaC22B.1.3690.00057
ORF7a47H47HcaTcaC22B.1.5260.000047
ORF7a47H47HcaTcaC22B.1.6370.000146
ORF7a47H47HcaTcaC11A0.000387
ORF7a47H47HcaTcaC11AA.10.007246
ORF7a47H47HcaTcaC11AY.1130.000142
ORF7a47H47HcaTcaC11AY.1140.000231
ORF7a47H47HcaTcaC11AY.116.10.000311
ORF7a47H47HcaTcaC11AY.1170.000085
ORF7a47H47HcaTcaC11AY.130.000161
ORF7a47H47HcaTcaC11AY.160.00038
ORF7a47H47HcaTcaC11AY.270.000065
ORF7a47H47HcaTcaC11AY.330.000067
ORF7a47H47HcaTcaC11AY.360.000148
ORF7a47H47HcaTcaC11AY.420.00004
ORF7a47H47HcaTcaC11AY.450.000122
ORF7a47H47HcaTcaC11AY.480.000465
ORF7a47H47HcaTcaC11AY.50.000021
ORF7a47H47HcaTcaC11AY.540.000095
ORF7a47H47HcaTcaC11AY.570.000656
ORF7a47H47HcaTcaC11AY.610.000105
ORF7a47H47HcaTcaC11AY.640.000595
ORF7a47H47HcaTcaC11AY.670.000464
ORF7a47H47HcaTcaC11AY.7.10.000113
ORF7a47H47HcaTcaC11AY.710.000475
ORF7a47H47HcaTcaC11AY.740.000116
ORF7a47H47HcaTcaC11AY.75.10.00018
ORF7a47H47HcaTcaC11AY.9.20.000037
ORF7a47H47HcaTcaC11AY.99.20.000092
ORF7a47H47HcaTcaC11B.1.1.1570.000913
ORF7a47H47HcaTcaC11B.1.1.1720.018182
ORF7a47H47HcaTcaC11B.1.1.3340.016393
ORF7a47H47HcaTcaC11B.1.1.3870.058824
ORF7a47H47HcaTcaC11B.1.1.4090.002833
ORF7a47H47HcaTcaC11B.1.1390.000733
ORF7a47H47HcaTcaC11B.1.177.560.000668
ORF7a47H47HcaTcaC11B.1.177.870.000728
ORF7a47H47HcaTcaC11B.1.220.001318
ORF7a47H47HcaTcaC11B.1.2210.000071
ORF7a47H47HcaTcaC11B.1.2430.00007
ORF7a47H47HcaTcaC11B.1.3010.005917
ORF7a47H47HcaTcaC11B.1.3040.023256
ORF7a47H47HcaTcaC11B.1.3200.001245
ORF7a47H47HcaTcaC11B.1.3510.00003
ORF7a47H47HcaTcaC11B.1.351.20.000303
ORF7a47H47HcaTcaC11B.1.360.000146
ORF7a47H47HcaTcaC11B.1.36.100.004785
ORF7a47H47HcaTcaC11B.1.36.220.001208
ORF7a47H47HcaTcaC11B.1.3960.000706
ORF7a47H47HcaTcaC11B.1.4150.014286
ORF7a47H47HcaTcaC11B.1.4270.00005
ORF7a47H47HcaTcaC11B.1.4700.001404
ORF7a47H47HcaTcaC11B.1.5250.000113
ORF7a47H47HcaTcaC11B.1.5480.035714
ORF7a47H47HcaTcaC11B.1.5580.004566
ORF7a47H47HcaTcaC11B.1.5880.00091
ORF7a47H47HcaTcaC11B.60.00091
ORF7a47H47HcaTcaC11D.20.000075
ORF7a47H47HcaTcaC11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.