CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 38 | G38X | nonsyn | Gga | Tga | 4130 | 4130 | 1 | 27505-27507 |
Details of the mutation G38X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 38 | G38X | Gga | Tga | 4130 | 4130 | All | 0.00079 |
ORF7a | 38 | G38X | Gga | Tga | 2270 | 2270 | AY.4 | 0.003533 |
ORF7a | 38 | G38X | Gga | Tga | 270 | 270 | AY.43 | 0.001196 |
ORF7a | 38 | G38X | Gga | Tga | 269 | 269 | B.1.617.2 | 0.001013 |
ORF7a | 38 | G38X | Gga | Tga | 237 | 237 | B.1.1.7 | 0.000212 |
ORF7a | 38 | G38X | Gga | Tga | 98 | 98 | AY.92 | 0.028153 |
ORF7a | 38 | G38X | Gga | Tga | 75 | 75 | AY.47 | 0.002333 |
ORF7a | 38 | G38X | Gga | Tga | 73 | 73 | AY.103 | 0.000453 |
ORF7a | 38 | G38X | Gga | Tga | 66 | 66 | AY.9 | 0.004461 |
ORF7a | 38 | G38X | Gga | Tga | 53 | 53 | AY.42 | 0.002132 |
ORF7a | 38 | G38X | Gga | Tga | 52 | 52 | AY.44 | 0.000317 |
ORF7a | 38 | G38X | Gga | Tga | 46 | 46 | AY.98.1 | 0.002228 |
ORF7a | 38 | G38X | Gga | Tga | 45 | 45 | B.1.526 | 0.001058 |
ORF7a | 38 | G38X | Gga | Tga | 31 | 31 | AY.33 | 0.00207 |
ORF7a | 38 | G38X | Gga | Tga | 27 | 27 | AY.3.1 | 0.002302 |
ORF7a | 38 | G38X | Gga | Tga | 24 | 24 | AY.3 | 0.000239 |
ORF7a | 38 | G38X | Gga | Tga | 21 | 21 | AY.102 | 0.000557 |
ORF7a | 38 | G38X | Gga | Tga | 18 | 18 | AY.13 | 0.002898 |
ORF7a | 38 | G38X | Gga | Tga | 18 | 18 | AY.5 | 0.000372 |
ORF7a | 38 | G38X | Gga | Tga | 17 | 17 | B.1.2 | 0.00015 |
ORF7a | 38 | G38X | Gga | Tga | 17 | 17 | B.1.218 | 0.087629 |
ORF7a | 38 | G38X | Gga | Tga | 16 | 16 | AY.39.1 | 0.000634 |
ORF7a | 38 | G38X | Gga | Tga | 14 | 14 | AY.20 | 0.000544 |
ORF7a | 38 | G38X | Gga | Tga | 14 | 14 | B.1 | 0.000128 |
ORF7a | 38 | G38X | Gga | Tga | 13 | 13 | B.1.160 | 0.000405 |
ORF7a | 38 | G38X | Gga | Tga | 12 | 12 | B.1.177 | 0.000158 |
ORF7a | 38 | G38X | Gga | Tga | 11 | 11 | B.1.637 | 0.000804 |
ORF7a | 38 | G38X | Gga | Tga | 10 | 10 | AY.119 | 0.000353 |
ORF7a | 38 | G38X | Gga | Tga | 10 | 10 | AY.39 | 0.000247 |
ORF7a | 38 | G38X | Gga | Tga | 9 | 9 | AY.4.2 | 0.000195 |
ORF7a | 38 | G38X | Gga | Tga | 9 | 9 | AY.6 | 0.00037 |
ORF7a | 38 | G38X | Gga | Tga | 9 | 9 | P.1 | 0.000142 |
ORF7a | 38 | G38X | Gga | Tga | 8 | 8 | AY.29 | 0.000126 |
ORF7a | 38 | G38X | Gga | Tga | 8 | 8 | AY.32 | 0.00426 |
ORF7a | 38 | G38X | Gga | Tga | 8 | 8 | AY.84 | 0.0035 |
ORF7a | 38 | G38X | Gga | Tga | 8 | 8 | B.1.110.3 | 0.005747 |
ORF7a | 38 | G38X | Gga | Tga | 8 | 8 | B.1.525 | 0.000905 |
ORF7a | 38 | G38X | Gga | Tga | 8 | 8 | P.1.14 | 0.000382 |
ORF7a | 38 | G38X | Gga | Tga | 7 | 7 | AY.9.1 | 0.000586 |
ORF7a | 38 | G38X | Gga | Tga | 6 | 6 | AY.113 | 0.000854 |
ORF7a | 38 | G38X | Gga | Tga | 6 | 6 | AY.26 | 0.00017 |
ORF7a | 38 | G38X | Gga | Tga | 6 | 6 | AY.61 | 0.000629 |
ORF7a | 38 | G38X | Gga | Tga | 6 | 6 | B.1.351 | 0.000178 |
ORF7a | 38 | G38X | Gga | Tga | 6 | 6 | C.37.1 | 0.015707 |
ORF7a | 38 | G38X | Gga | Tga | 6 | 6 | Q.8 | 0.000989 |
ORF7a | 38 | G38X | Gga | Tga | 5 | 5 | AY.120 | 0.000186 |
ORF7a | 38 | G38X | Gga | Tga | 5 | 5 | AY.9.2 | 0.000184 |
ORF7a | 38 | G38X | Gga | Tga | 5 | 5 | AY.99.2 | 0.000461 |
ORF7a | 38 | G38X | Gga | Tga | 5 | 5 | B.1.221 | 0.000355 |
ORF7a | 38 | G38X | Gga | Tga | 5 | 5 | B.1.564 | 0.002129 |
ORF7a | 38 | G38X | Gga | Tga | 5 | 5 | B.1.575 | 0.001517 |
ORF7a | 38 | G38X | Gga | Tga | 4 | 4 | AY.106 | 0.00134 |
ORF7a | 38 | G38X | Gga | Tga | 4 | 4 | AY.27 | 0.000259 |
ORF7a | 38 | G38X | Gga | Tga | 4 | 4 | AY.59 | 0.002119 |
ORF7a | 38 | G38X | Gga | Tga | 4 | 4 | B.1.429 | 0.000094 |
ORF7a | 38 | G38X | Gga | Tga | 4 | 4 | C.37 | 0.000464 |
ORF7a | 38 | G38X | Gga | Tga | 4 | 4 | D.2 | 0.0003 |
ORF7a | 38 | G38X | Gga | Tga | 4 | 4 | P.4 | 0.015209 |
ORF7a | 38 | G38X | Gga | Tga | 3 | 3 | AY.104 | 0.005952 |
ORF7a | 38 | G38X | Gga | Tga | 3 | 3 | AY.21 | 0.005693 |
ORF7a | 38 | G38X | Gga | Tga | 3 | 3 | AY.23 | 0.000209 |
ORF7a | 38 | G38X | Gga | Tga | 3 | 3 | AY.46.6 | 0.000217 |
ORF7a | 38 | G38X | Gga | Tga | 3 | 3 | AY.74 | 0.000347 |
ORF7a | 38 | G38X | Gga | Tga | 3 | 3 | B.1.1.214 | 0.000166 |
ORF7a | 38 | G38X | Gga | Tga | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.105 | 0.001286 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.116 | 0.000574 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.24 | 0.000862 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.34 | 0.000194 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.4.5 | 0.000215 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.46 | 0.000208 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.46.2 | 0.001271 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.5.4 | 0.000553 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.62 | 0.000871 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.70 | 0.000417 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.75 | 0.000112 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.85 | 0.000854 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | AY.87 | 0.001665 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | B.1.111 | 0.00235 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | B.1.240 | 0.000431 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | B.1.399 | 0.003868 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | B.1.466.2 | 0.000782 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | B.1.628 | 0.000705 |
ORF7a | 38 | G38X | Gga | Tga | 2 | 2 | P.1.7 | 0.000639 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.12 | 0.000316 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.29.1 | 0.000221 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.39.2 | 0.001541 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.40 | 0.000964 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.46.3 | 0.000934 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.49 | 0.003195 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.51 | 0.000909 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.58 | 0.000907 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.64 | 0.000595 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.76 | 0.004831 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.77 | 0.001127 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.1.157 | 0.000913 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.1.273 | 0.006757 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.1.54 | 0.003021 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.177.5 | 0.001242 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.177.65 | 0.000665 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.177.82 | 0.000477 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.234 | 0.000132 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.351.2 | 0.000303 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.36.1 | 0.00114 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.400 | 0.000429 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.411 | 0.003704 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.515 | 0.014493 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.517 | 0.000427 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.532 | 0.006211 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | C.36.3 | 0.000567 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | P.1.15 | 0.000232 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | Q.1 | 0.000126 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 38 | G38X | Gga | Tga | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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