CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 38 | G38R | nonsyn | Gga | Cga | 5030 | 4668 | 0.928032 | 27505-27507 | |
ORF7a | 38 | G38R | nonsyn | Gga | Aga | 5030 | 362 | 0.0719682 | 27505-27507 |
Details of the mutation G38R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 38 | G38R | Gga | Cga | 4668 | 5030 | All | 0.000893 |
ORF7a | 38 | G38R | Gga | Aga | 362 | 5030 | All | 0.000069 |
ORF7a | 38 | G38R | Gga | Cga | 3095 | 3208 | B.1.1.7 | 0.002771 |
ORF7a | 38 | G38R | Gga | Aga | 113 | 3208 | B.1.1.7 | 0.000101 |
ORF7a | 38 | G38R | Gga | Cga | 745 | 746 | AY.26 | 0.021091 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 746 | AY.26 | 0.000028 |
ORF7a | 38 | G38R | Gga | Cga | 312 | 312 | AY.29.1 | 0.068798 |
ORF7a | 38 | G38R | Gga | Cga | 187 | 230 | AY.4 | 0.000291 |
ORF7a | 38 | G38R | Gga | Aga | 43 | 230 | AY.4 | 0.000067 |
ORF7a | 38 | G38R | Gga | Cga | 93 | 103 | B.1.617.2 | 0.00035 |
ORF7a | 38 | G38R | Gga | Aga | 10 | 103 | B.1.617.2 | 0.000038 |
ORF7a | 38 | G38R | Gga | Aga | 33 | 35 | AY.119 | 0.001165 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 35 | AY.119 | 0.000071 |
ORF7a | 38 | G38R | Gga | Aga | 30 | 30 | AY.1 | 0.011872 |
ORF7a | 38 | G38R | Gga | Cga | 24 | 27 | AY.3 | 0.000239 |
ORF7a | 38 | G38R | Gga | Aga | 3 | 27 | AY.3 | 0.00003 |
ORF7a | 38 | G38R | Gga | Cga | 21 | 24 | B.1.429 | 0.000494 |
ORF7a | 38 | G38R | Gga | Aga | 3 | 24 | B.1.429 | 0.000071 |
ORF7a | 38 | G38R | Gga | Aga | 10 | 18 | AY.103 | 0.000062 |
ORF7a | 38 | G38R | Gga | Cga | 8 | 18 | AY.103 | 0.00005 |
ORF7a | 38 | G38R | Gga | Cga | 14 | 18 | AY.44 | 0.000085 |
ORF7a | 38 | G38R | Gga | Aga | 4 | 18 | AY.44 | 0.000024 |
ORF7a | 38 | G38R | Gga | Cga | 16 | 16 | AY.113 | 0.002278 |
ORF7a | 38 | G38R | Gga | Aga | 15 | 16 | AY.4.2 | 0.000325 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 16 | AY.4.2 | 0.000022 |
ORF7a | 38 | G38R | Gga | Cga | 13 | 16 | AY.43 | 0.000058 |
ORF7a | 38 | G38R | Gga | Aga | 3 | 16 | AY.43 | 0.000013 |
ORF7a | 38 | G38R | Gga | Cga | 15 | 15 | B.1.1.214 | 0.000832 |
ORF7a | 38 | G38R | Gga | Aga | 12 | 13 | AY.45 | 0.00146 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 13 | AY.45 | 0.000122 |
ORF7a | 38 | G38R | Gga | Aga | 7 | 11 | AY.29 | 0.00011 |
ORF7a | 38 | G38R | Gga | Cga | 4 | 11 | AY.29 | 0.000063 |
ORF7a | 38 | G38R | Gga | Cga | 8 | 11 | B.1.526 | 0.000188 |
ORF7a | 38 | G38R | Gga | Aga | 3 | 11 | B.1.526 | 0.000071 |
ORF7a | 38 | G38R | Gga | Cga | 8 | 8 | AY.100 | 0.000368 |
ORF7a | 38 | G38R | Gga | Cga | 4 | 8 | B.1.351 | 0.000119 |
ORF7a | 38 | G38R | Gga | Aga | 4 | 8 | B.1.351 | 0.000119 |
ORF7a | 38 | G38R | Gga | Cga | 4 | 7 | B.1 | 0.000037 |
ORF7a | 38 | G38R | Gga | Aga | 3 | 7 | B.1 | 0.000027 |
ORF7a | 38 | G38R | Gga | Cga | 5 | 7 | B.1.1.519 | 0.000199 |
ORF7a | 38 | G38R | Gga | Aga | 2 | 7 | B.1.1.519 | 0.000079 |
ORF7a | 38 | G38R | Gga | Cga | 5 | 6 | AY.102 | 0.000133 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 6 | AY.102 | 0.000027 |
ORF7a | 38 | G38R | Gga | Aga | 6 | 6 | AY.109 | 0.004438 |
ORF7a | 38 | G38R | Gga | Cga | 6 | 6 | AY.3.1 | 0.000512 |
ORF7a | 38 | G38R | Gga | Aga | 6 | 6 | B.1.160 | 0.000187 |
ORF7a | 38 | G38R | Gga | Aga | 4 | 6 | B.1.2 | 0.000035 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 6 | B.1.2 | 0.000018 |
ORF7a | 38 | G38R | Gga | Cga | 5 | 6 | P.1 | 0.000079 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 6 | P.1 | 0.000016 |
ORF7a | 38 | G38R | Gga | Cga | 6 | 6 | P.1.16 | 0.002245 |
ORF7a | 38 | G38R | Gga | Aga | 3 | 5 | AY.39 | 0.000074 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 5 | AY.39 | 0.000049 |
ORF7a | 38 | G38R | Gga | Aga | 5 | 5 | AY.72 | 0.006803 |
ORF7a | 38 | G38R | Gga | Cga | 5 | 5 | B.1.1 | 0.000091 |
ORF7a | 38 | G38R | Gga | Cga | 3 | 4 | AY.42 | 0.000121 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 4 | AY.42 | 0.00004 |
ORF7a | 38 | G38R | Gga | Cga | 4 | 4 | AY.61 | 0.000419 |
ORF7a | 38 | G38R | Gga | Cga | 4 | 4 | B.1.427 | 0.000202 |
ORF7a | 38 | G38R | Gga | Cga | 3 | 3 | AY.121 | 0.000406 |
ORF7a | 38 | G38R | Gga | Cga | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 38 | G38R | Gga | Cga | 3 | 3 | AY.36 | 0.000445 |
ORF7a | 38 | G38R | Gga | Aga | 2 | 3 | B.1.36 | 0.000292 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 3 | B.1.36 | 0.000146 |
ORF7a | 38 | G38R | Gga | Cga | 3 | 3 | B.1.416.1 | 0.004687 |
ORF7a | 38 | G38R | Gga | Aga | 3 | 3 | B.1.8 | 0.005917 |
ORF7a | 38 | G38R | Gga | Aga | 2 | 2 | AY.13 | 0.000322 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 2 | AY.16 | 0.00038 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 2 | AY.16 | 0.00038 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 2 | AY.34 | 0.000097 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 2 | AY.34 | 0.000097 |
ORF7a | 38 | G38R | Gga | Aga | 2 | 2 | AY.39.1 | 0.000079 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 2 | AY.4.4 | 0.000818 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 2 | AY.5.3 | 0.000675 |
ORF7a | 38 | G38R | Gga | Aga | 2 | 2 | AY.58 | 0.001815 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 2 | B.1.1.222 | 0.000204 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 2 | B.1.1.222 | 0.000204 |
ORF7a | 38 | G38R | Gga | Aga | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 2 | B.1.258 | 0.000133 |
ORF7a | 38 | G38R | Gga | Aga | 2 | 2 | B.1.36.8 | 0.002 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 38 | G38R | Gga | Cga | 2 | 2 | B.1.617.1 | 0.000258 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.108 | 0.001103 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.2 | 0.000356 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.46.2 | 0.000635 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.70 | 0.000209 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.73 | 0.000665 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.82 | 0.001357 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | B | 0.000128 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | B.1.1.135 | 0.004695 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | B.1.1.176 | 0.000439 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | B.1.177.69 | 0.001484 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | B.1.36.29 | 0.000517 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | B.1.617.3 | 0.002985 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 38 | G38R | Gga | Cga | 1 | 1 | D.2 | 0.000075 |
ORF7a | 38 | G38R | Gga | Aga | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|