CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 87 | F87L | nonsyn | ttC | ttG | 485 | 249 | 0.513402 | 27652-27654 | |
ORF7a | 87 | F87L | nonsyn | Ttc | Ctc | 485 | 171 | 0.352577 | 27652-27654 | |
ORF7a | 87 | F87L | nonsyn | ttC | ttA | 485 | 64 | 0.131959 | 27652-27654 | |
ORF7a | 87 | F87L | nonsyn | TtC | CtA | 485 | 1 | 0.00206186 | 27652-27654 |
Details of the mutation F87L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 87 | F87L | ttC | ttG | 249 | 485 | All | 0.000048 |
ORF7a | 87 | F87L | Ttc | Ctc | 171 | 485 | All | 0.000033 |
ORF7a | 87 | F87L | ttC | ttA | 64 | 485 | All | 0.000012 |
ORF7a | 87 | F87L | TtC | CtA | 1 | 485 | All | 0 |
ORF7a | 87 | F87L | Ttc | Ctc | 51 | 77 | B.1.1.7 | 0.000046 |
ORF7a | 87 | F87L | ttC | ttG | 24 | 77 | B.1.1.7 | 0.000021 |
ORF7a | 87 | F87L | ttC | ttA | 2 | 77 | B.1.1.7 | 0.000002 |
ORF7a | 87 | F87L | ttC | ttA | 26 | 54 | B.1.2 | 0.000229 |
ORF7a | 87 | F87L | ttC | ttG | 26 | 54 | B.1.2 | 0.000229 |
ORF7a | 87 | F87L | Ttc | Ctc | 2 | 54 | B.1.2 | 0.000018 |
ORF7a | 87 | F87L | ttC | ttG | 44 | 44 | B.1.169 | 0.656716 |
ORF7a | 87 | F87L | Ttc | Ctc | 33 | 33 | B.1.497 | 0.010387 |
ORF7a | 87 | F87L | ttC | ttG | 27 | 29 | B.1.1.291 | 0.020045 |
ORF7a | 87 | F87L | Ttc | Ctc | 2 | 29 | B.1.1.291 | 0.001485 |
ORF7a | 87 | F87L | ttC | ttG | 14 | 26 | B.1 | 0.000128 |
ORF7a | 87 | F87L | ttC | ttA | 7 | 26 | B.1 | 0.000064 |
ORF7a | 87 | F87L | Ttc | Ctc | 5 | 26 | B.1 | 0.000046 |
ORF7a | 87 | F87L | ttC | ttG | 25 | 25 | B.1.333 | 0.263158 |
ORF7a | 87 | F87L | Ttc | Ctc | 13 | 18 | AY.4 | 0.00002 |
ORF7a | 87 | F87L | ttC | ttG | 3 | 18 | AY.4 | 0.000005 |
ORF7a | 87 | F87L | ttC | ttA | 2 | 18 | AY.4 | 0.000003 |
ORF7a | 87 | F87L | Ttc | Ctc | 12 | 18 | B.1.177 | 0.000158 |
ORF7a | 87 | F87L | ttC | ttA | 5 | 18 | B.1.177 | 0.000066 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 18 | B.1.177 | 0.000013 |
ORF7a | 87 | F87L | ttC | ttG | 17 | 17 | B.1.446 | 0.34 |
ORF7a | 87 | F87L | ttC | ttA | 6 | 7 | AY.25 | 0.000036 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 7 | AY.25 | 0.000006 |
ORF7a | 87 | F87L | Ttc | Ctc | 5 | 7 | AY.3 | 0.00005 |
ORF7a | 87 | F87L | ttC | ttG | 2 | 7 | AY.3 | 0.00002 |
ORF7a | 87 | F87L | ttC | ttG | 7 | 7 | P.1 | 0.00011 |
ORF7a | 87 | F87L | ttC | ttA | 3 | 5 | AY.43 | 0.000013 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 5 | AY.43 | 0.000004 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 5 | AY.43 | 0.000004 |
ORF7a | 87 | F87L | Ttc | Ctc | 5 | 5 | AY.44 | 0.00003 |
ORF7a | 87 | F87L | Ttc | Ctc | 4 | 5 | B.1.160 | 0.000125 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 5 | B.1.160 | 0.000031 |
ORF7a | 87 | F87L | ttC | ttG | 5 | 5 | B.1.341 | 0.113636 |
ORF7a | 87 | F87L | ttC | ttG | 5 | 5 | B.1.525 | 0.000566 |
ORF7a | 87 | F87L | ttC | ttG | 4 | 5 | B.1.617.2 | 0.000015 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 5 | B.1.617.2 | 0.000004 |
ORF7a | 87 | F87L | ttC | ttG | 3 | 3 | A.1 | 0.000846 |
ORF7a | 87 | F87L | Ttc | Ctc | 3 | 3 | AY.75 | 0.000168 |
ORF7a | 87 | F87L | Ttc | Ctc | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 87 | F87L | Ttc | Ctc | 2 | 3 | B.1.1.222 | 0.000408 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 3 | B.1.1.222 | 0.000204 |
ORF7a | 87 | F87L | ttC | ttG | 3 | 3 | B.1.1.98 | 0.055556 |
ORF7a | 87 | F87L | ttC | ttG | 3 | 3 | B.1.240 | 0.000647 |
ORF7a | 87 | F87L | ttC | ttG | 3 | 3 | B.1.243 | 0.000209 |
ORF7a | 87 | F87L | Ttc | Ctc | 3 | 3 | B.1.258.17 | 0.000312 |
ORF7a | 87 | F87L | ttC | ttG | 3 | 3 | B.1.371 | 0.003367 |
ORF7a | 87 | F87L | Ttc | Ctc | 2 | 3 | B.1.396 | 0.001411 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 3 | B.1.396 | 0.000706 |
ORF7a | 87 | F87L | Ttc | Ctc | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 2 | AY.23 | 0.00007 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 2 | AY.23 | 0.00007 |
ORF7a | 87 | F87L | Ttc | Ctc | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 87 | F87L | ttC | ttG | 2 | 2 | B.1.1.228 | 0.006098 |
ORF7a | 87 | F87L | ttC | ttG | 2 | 2 | B.1.1.26 | 0.010471 |
ORF7a | 87 | F87L | Ttc | Ctc | 2 | 2 | B.1.349 | 0.00143 |
ORF7a | 87 | F87L | ttC | ttG | 2 | 2 | B.1.369 | 0.00057 |
ORF7a | 87 | F87L | ttC | ttG | 2 | 2 | B.1.574 | 0.004301 |
ORF7a | 87 | F87L | ttC | ttA | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | A | 0.000387 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | A.28 | 0.002646 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | AY.24 | 0.000431 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | AY.39.1 | 0.00004 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | B | 0.000128 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.1.116 | 0.0625 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | B.1.1.461 | 0.012048 |
ORF7a | 87 | F87L | TtC | CtA | 1 | 1 | B.1.1.486 | 0.001577 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | B.1.160.24 | 0.004425 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.188 | 0.016667 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.206 | 0.000816 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.313 | 0.006579 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.320 | 0.001245 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.324 | 0.001605 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.336 | 0.002439 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.337 | 0.005587 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.340 | 0.004292 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.367 | 0.000792 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | B.1.409 | 0.000781 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.426 | 0.001009 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.565 | 0.00081 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.594 | 0.03125 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | B.1.599 | 0.00365 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | B.1.619.1 | 0.000641 |
ORF7a | 87 | F87L | ttC | ttA | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | B.1.636 | 0.006711 |
ORF7a | 87 | F87L | Ttc | Ctc | 1 | 1 | C.35 | 0.000774 |
ORF7a | 87 | F87L | ttC | ttG | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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