CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = F59del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	59	F59del		del	TTT	---	32671	32671	1	27568-27570

Details of the mutation F59del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	59	F59del	TTT	---	32671	32671	All	0.006249
ORF7a	59	F59del	TTT	---	12150	12150	AY.4	0.018911
ORF7a	59	F59del	TTT	---	4130	4130	B.1.1.7	0.003697
ORF7a	59	F59del	TTT	---	3432	3432	B.1.617.2	0.012923
ORF7a	59	F59del	TTT	---	1666	1666	AY.120.1	0.534831
ORF7a	59	F59del	TTT	---	1591	1591	AY.25	0.00957
ORF7a	59	F59del	TTT	---	968	968	AY.43	0.004289
ORF7a	59	F59del	TTT	---	662	662	AY.103	0.00411
ORF7a	59	F59del	TTT	---	586	586	AY.44	0.003567
ORF7a	59	F59del	TTT	---	494	494	AY.3	0.004914
ORF7a	59	F59del	TTT	---	441	441	AY.26	0.012485
ORF7a	59	F59del	TTT	---	390	390	AY.39	0.009637
ORF7a	59	F59del	TTT	---	337	337	AY.102	0.008935
ORF7a	59	F59del	TTT	---	276	276	AY.46.5	0.054762
ORF7a	59	F59del	TTT	---	273	273	AY.29	0.004306
ORF7a	59	F59del	TTT	---	257	257	AY.4.2	0.005574
ORF7a	59	F59del	TTT	---	225	225	AY.120	0.008365
ORF7a	59	F59del	TTT	---	216	216	B.1.351	0.006421
ORF7a	59	F59del	TTT	---	185	185	B.1.177.21	0.014147
ORF7a	59	F59del	TTT	---	174	174	AY.98	0.013745
ORF7a	59	F59del	TTT	---	158	158	B.1.526	0.003714
ORF7a	59	F59del	TTT	---	147	147	AY.5	0.003035
ORF7a	59	F59del	TTT	---	134	134	B.1	0.001227
ORF7a	59	F59del	TTT	---	130	130	AY.54	0.012395
ORF7a	59	F59del	TTT	---	126	126	AY.47	0.003919
ORF7a	59	F59del	TTT	---	125	125	AY.100	0.005751
ORF7a	59	F59del	TTT	---	124	124	B.1.177	0.001633
ORF7a	59	F59del	TTT	---	116	116	AY.119	0.004096
ORF7a	59	F59del	TTT	---	115	115	AY.7.1	0.012961
ORF7a	59	F59del	TTT	---	89	89	AY.46.4	0.014641
ORF7a	59	F59del	TTT	---	86	86	B.1.2	0.000757
ORF7a	59	F59del	TTT	---	81	81	AY.33	0.005409
ORF7a	59	F59del	TTT	---	77	77	AY.46.6	0.00556
ORF7a	59	F59del	TTT	---	68	68	AY.3.1	0.005798
ORF7a	59	F59del	TTT	---	64	64	AY.42	0.002575
ORF7a	59	F59del	TTT	---	64	64	AY.5.4	0.017709
ORF7a	59	F59del	TTT	---	60	60	AY.45	0.007301
ORF7a	59	F59del	TTT	---	59	59	AY.113	0.008401
ORF7a	59	F59del	TTT	---	59	59	AY.6	0.002427
ORF7a	59	F59del	TTT	---	58	58	AY.46	0.006037
ORF7a	59	F59del	TTT	---	58	58	P.1	0.000914
ORF7a	59	F59del	TTT	---	57	57	AY.39.1	0.002258
ORF7a	59	F59del	TTT	---	57	57	AY.75	0.003193
ORF7a	59	F59del	TTT	---	53	53	AY.20	0.00206
ORF7a	59	F59del	TTT	---	53	53	AY.23	0.003697
ORF7a	59	F59del	TTT	---	51	51	B.1.621	0.004514
ORF7a	59	F59del	TTT	---	45	45	AY.13	0.007244
ORF7a	59	F59del	TTT	---	44	44	AY.107	0.020503
ORF7a	59	F59del	TTT	---	44	44	AY.9.2	0.001616
ORF7a	59	F59del	TTT	---	44	44	AY.98.1	0.002131
ORF7a	59	F59del	TTT	---	40	40	AY.118	0.002506
ORF7a	59	F59del	TTT	---	40	40	AY.4.2.1	0.005959
ORF7a	59	F59del	TTT	---	40	40	B.1.1.284	0.004296
ORF7a	59	F59del	TTT	---	39	39	AY.110	0.004395
ORF7a	59	F59del	TTT	---	39	39	P.1.14	0.001864
ORF7a	59	F59del	TTT	---	38	38	B.1.1	0.000689
ORF7a	59	F59del	TTT	---	37	37	AY.117	0.003127
ORF7a	59	F59del	TTT	---	35	35	AY.34	0.003394
ORF7a	59	F59del	TTT	---	35	35	AY.7	0.00686
ORF7a	59	F59del	TTT	---	35	35	AY.9	0.002366
ORF7a	59	F59del	TTT	---	35	35	B.1.160	0.001092
ORF7a	59	F59del	TTT	---	32	32	B.1.1.214	0.001775
ORF7a	59	F59del	TTT	---	30	30	AY.91	0.021914
ORF7a	59	F59del	TTT	---	29	29	AY.99.2	0.002673
ORF7a	59	F59del	TTT	---	28	28	AY.60	0.026266
ORF7a	59	F59del	TTT	---	26	26	AY.19	0.029647
ORF7a	59	F59del	TTT	---	26	26	AY.61	0.002724
ORF7a	59	F59del	TTT	---	26	26	AY.9.1	0.002177
ORF7a	59	F59del	TTT	---	26	26	B.1.637	0.0019
ORF7a	59	F59del	TTT	---	24	24	AY.121	0.003248
ORF7a	59	F59del	TTT	---	24	24	AY.7.2	0.013423
ORF7a	59	F59del	TTT	---	23	23	C.37	0.002669
ORF7a	59	F59del	TTT	---	22	22	AY.30	0.008706
ORF7a	59	F59del	TTT	---	22	22	AY.36	0.003261
ORF7a	59	F59del	TTT	---	22	22	B.1.429	0.000518
ORF7a	59	F59del	TTT	---	21	21	AY.106	0.007033
ORF7a	59	F59del	TTT	---	19	19	AY.116	0.005449
ORF7a	59	F59del	TTT	---	19	19	B.1.1.222	0.003876
ORF7a	59	F59del	TTT	---	19	19	B.1.214.2	0.011391
ORF7a	59	F59del	TTT	---	18	18	AY.111	0.003297
ORF7a	59	F59del	TTT	---	17	17	AY.4.5	0.001827
ORF7a	59	F59del	TTT	---	17	17	AY.74	0.001966
ORF7a	59	F59del	TTT	---	17	17	R.1	0.00153
ORF7a	59	F59del	TTT	---	16	16	AY.1	0.006332
ORF7a	59	F59del	TTT	---	16	16	AY.37	0.005057
ORF7a	59	F59del	TTT	---	16	16	AY.62	0.006972
ORF7a	59	F59del	TTT	---	16	16	B.1.427	0.000808
ORF7a	59	F59del	TTT	---	15	15	AY.14	0.00132
ORF7a	59	F59del	TTT	---	15	15	AY.46.2	0.00953
ORF7a	59	F59del	TTT	---	15	15	B.1.596	0.001307
ORF7a	59	F59del	TTT	---	14	14	AY.114	0.003235
ORF7a	59	F59del	TTT	---	14	14	B.1.1.258	0.045603
ORF7a	59	F59del	TTT	---	14	14	B.1.243	0.000974
ORF7a	59	F59del	TTT	---	13	13	AY.68	0.003559
ORF7a	59	F59del	TTT	---	13	13	AY.84	0.005687
ORF7a	59	F59del	TTT	---	13	13	B.1.1.519	0.000516
ORF7a	59	F59del	TTT	---	13	13	B.1.525	0.001471
ORF7a	59	F59del	TTT	---	12	12	AY.90	0.008214
ORF7a	59	F59del	TTT	---	12	12	B.1.324	0.019262
ORF7a	59	F59del	TTT	---	12	12	Q.8	0.001979
ORF7a	59	F59del	TTT	---	11	11	AY.12	0.003477
ORF7a	59	F59del	TTT	---	11	11	AY.87	0.009159
ORF7a	59	F59del	TTT	---	11	11	AY.99	0.011542
ORF7a	59	F59del	TTT	---	11	11	B.1.177.60	0.002403
ORF7a	59	F59del	TTT	---	10	10	AY.35	0.00233
ORF7a	59	F59del	TTT	---	10	10	B.1.177.56	0.006676
ORF7a	59	F59del	TTT	---	10	10	B.1.391	0.011274
ORF7a	59	F59del	TTT	---	9	9	AY.109	0.006657
ORF7a	59	F59del	TTT	---	9	9	B.1.258.9	0.045
ORF7a	59	F59del	TTT	---	9	9	L.1	0.017143
ORF7a	59	F59del	TTT	---	8	8	A.21	0.022161
ORF7a	59	F59del	TTT	---	8	8	AY.10	0.00424
ORF7a	59	F59del	TTT	---	8	8	AY.27	0.000518
ORF7a	59	F59del	TTT	---	8	8	AY.29.1	0.001764
ORF7a	59	F59del	TTT	---	8	8	AY.52	0.006515
ORF7a	59	F59del	TTT	---	8	8	AY.85	0.003417
ORF7a	59	F59del	TTT	---	8	8	B.1.1.231	0.024768
ORF7a	59	F59del	TTT	---	8	8	P.1.15	0.001859
ORF7a	59	F59del	TTT	---	8	8	Q.1	0.001011
ORF7a	59	F59del	TTT	---	7	7	AY.65	0.003731
ORF7a	59	F59del	TTT	---	7	7	AY.71	0.003325
ORF7a	59	F59del	TTT	---	7	7	AY.75.1	0.001262
ORF7a	59	F59del	TTT	---	7	7	AY.92	0.002011
ORF7a	59	F59del	TTT	---	7	7	B.1.628	0.002467
ORF7a	59	F59del	TTT	---	6	6	AY.108	0.006615
ORF7a	59	F59del	TTT	---	6	6	AY.116.1	0.001869
ORF7a	59	F59del	TTT	---	6	6	AY.32	0.003195
ORF7a	59	F59del	TTT	---	6	6	AY.34.1	0.00306
ORF7a	59	F59del	TTT	---	6	6	AY.46.1	0.00616
ORF7a	59	F59del	TTT	---	6	6	B.1.177.20	0.009105
ORF7a	59	F59del	TTT	---	5	5	AY.16	0.001898
ORF7a	59	F59del	TTT	---	5	5	AY.4.4	0.002046
ORF7a	59	F59del	TTT	---	5	5	AY.48	0.002326
ORF7a	59	F59del	TTT	---	5	5	AY.66	0.005348
ORF7a	59	F59del	TTT	---	5	5	AY.80	0.005643
ORF7a	59	F59del	TTT	---	5	5	AY.93	0.001365
ORF7a	59	F59del	TTT	---	5	5	AY.95	0.003805
ORF7a	59	F59del	TTT	---	5	5	B.1.1.56	0.089286
ORF7a	59	F59del	TTT	---	5	5	B.1.375	0.004098
ORF7a	59	F59del	TTT	---	5	5	B.1.595	0.001305
ORF7a	59	F59del	TTT	---	5	5	B.1.70	0.121951
ORF7a	59	F59del	TTT	---	5	5	P.2	0.000933
ORF7a	59	F59del	TTT	---	4	4	A	0.001548
ORF7a	59	F59del	TTT	---	4	4	AY.101	0.001962
ORF7a	59	F59del	TTT	---	4	4	AY.22	0.008368
ORF7a	59	F59del	TTT	---	4	4	AY.53	0.00115
ORF7a	59	F59del	TTT	---	4	4	AY.59	0.002119
ORF7a	59	F59del	TTT	---	4	4	AY.70	0.000834
ORF7a	59	F59del	TTT	---	4	4	AY.73	0.002661
ORF7a	59	F59del	TTT	---	4	4	AY.79	0.004843
ORF7a	59	F59del	TTT	---	4	4	B.1.1.318	0.001207
ORF7a	59	F59del	TTT	---	4	4	B.1.234	0.000528
ORF7a	59	F59del	TTT	---	4	4	D.2	0.0003
ORF7a	59	F59del	TTT	---	3	3	A.23.1	0.002113
ORF7a	59	F59del	TTT	---	3	3	AY.120.2	0.003856
ORF7a	59	F59del	TTT	---	3	3	AY.120.2.1	0.001495
ORF7a	59	F59del	TTT	---	3	3	AY.24	0.001293
ORF7a	59	F59del	TTT	---	3	3	AY.4.3	0.002525
ORF7a	59	F59del	TTT	---	3	3	AY.40	0.002893
ORF7a	59	F59del	TTT	---	3	3	AY.41	0.000882
ORF7a	59	F59del	TTT	---	3	3	AY.5.3	0.001012
ORF7a	59	F59del	TTT	---	3	3	AY.64	0.001786
ORF7a	59	F59del	TTT	---	3	3	AY.69	0.00056
ORF7a	59	F59del	TTT	---	3	3	AY.86	0.00249
ORF7a	59	F59del	TTT	---	3	3	AY.88	0.002653
ORF7a	59	F59del	TTT	---	3	3	B.1.1.118	0.030612
ORF7a	59	F59del	TTT	---	3	3	B.1.1.121	0.007282
ORF7a	59	F59del	TTT	---	3	3	B.1.1.25	0.001706
ORF7a	59	F59del	TTT	---	3	3	B.1.1.33	0.001263
ORF7a	59	F59del	TTT	---	3	3	B.1.160.16	0.002788
ORF7a	59	F59del	TTT	---	3	3	B.1.177.10	0.002634
ORF7a	59	F59del	TTT	---	3	3	B.1.177.57	0.000843
ORF7a	59	F59del	TTT	---	3	3	B.1.177.6	0.00293
ORF7a	59	F59del	TTT	---	3	3	B.1.177.62	0.003576
ORF7a	59	F59del	TTT	---	3	3	B.1.177.81	0.000568
ORF7a	59	F59del	TTT	---	3	3	B.1.221	0.000213
ORF7a	59	F59del	TTT	---	3	3	B.1.258	0.0002
ORF7a	59	F59del	TTT	---	3	3	B.1.258.17	0.000312
ORF7a	59	F59del	TTT	---	3	3	B.1.351.2	0.000908
ORF7a	59	F59del	TTT	---	3	3	B.1.36	0.000438
ORF7a	59	F59del	TTT	---	3	3	B.1.575	0.00091
ORF7a	59	F59del	TTT	---	3	3	B.1.582	0.001472
ORF7a	59	F59del	TTT	---	3	3	B.1.617.1	0.000387
ORF7a	59	F59del	TTT	---	3	3	B.1.621.1	0.001517
ORF7a	59	F59del	TTT	---	3	3	B.1.626	0.017143
ORF7a	59	F59del	TTT	---	3	3	P.1.16	0.001122
ORF7a	59	F59del	TTT	---	2	2	A.28	0.005291
ORF7a	59	F59del	TTT	---	2	2	AD.2	0.000438
ORF7a	59	F59del	TTT	---	2	2	AY.2	0.000712
ORF7a	59	F59del	TTT	---	2	2	AY.39.2	0.003082
ORF7a	59	F59del	TTT	---	2	2	AY.49	0.00639
ORF7a	59	F59del	TTT	---	2	2	AY.51	0.001818
ORF7a	59	F59del	TTT	---	2	2	AY.57	0.001312
ORF7a	59	F59del	TTT	---	2	2	AY.72	0.002721
ORF7a	59	F59del	TTT	---	2	2	AY.8	0.001212
ORF7a	59	F59del	TTT	---	2	2	B.1.1.1	0.000653
ORF7a	59	F59del	TTT	---	2	2	B.1.1.170	0.002494
ORF7a	59	F59del	TTT	---	2	2	B.1.1.219	0.01
ORF7a	59	F59del	TTT	---	2	2	B.1.1.220	0.003717
ORF7a	59	F59del	TTT	---	2	2	B.1.1.37	0.000386
ORF7a	59	F59del	TTT	---	2	2	B.1.1.372	0.001377
ORF7a	59	F59del	TTT	---	2	2	B.1.1.521	0.010695
ORF7a	59	F59del	TTT	---	2	2	B.1.177.16	0.001329
ORF7a	59	F59del	TTT	---	2	2	B.1.177.43	0.002954
ORF7a	59	F59del	TTT	---	2	2	B.1.177.5	0.002484
ORF7a	59	F59del	TTT	---	2	2	B.1.177.55	0.004662
ORF7a	59	F59del	TTT	---	2	2	B.1.177.86	0.000367
ORF7a	59	F59del	TTT	---	2	2	B.1.190	0.02
ORF7a	59	F59del	TTT	---	2	2	B.1.258.11	0.000793
ORF7a	59	F59del	TTT	---	2	2	B.1.264	0.024691
ORF7a	59	F59del	TTT	---	2	2	B.1.311	0.000549
ORF7a	59	F59del	TTT	---	2	2	B.1.349	0.00143
ORF7a	59	F59del	TTT	---	2	2	B.1.369	0.00057
ORF7a	59	F59del	TTT	---	2	2	B.1.401	0.016393
ORF7a	59	F59del	TTT	---	2	2	B.1.470	0.002809
ORF7a	59	F59del	TTT	---	2	2	B.1.497	0.00063
ORF7a	59	F59del	TTT	---	2	2	B.1.576	0.001813
ORF7a	59	F59del	TTT	---	2	2	B.1.617.3	0.00597
ORF7a	59	F59del	TTT	---	2	2	B.1.627	0.00404
ORF7a	59	F59del	TTT	---	2	2	C.36.3	0.001134
ORF7a	59	F59del	TTT	---	2	2	P.1.17.1	0.00175
ORF7a	59	F59del	TTT	---	2	2	P.1.2	0.002312
ORF7a	59	F59del	TTT	---	1	1	A.1	0.000282
ORF7a	59	F59del	TTT	---	1	1	A.2.5.3	0.010309
ORF7a	59	F59del	TTT	---	1	1	A.23	0.010526
ORF7a	59	F59del	TTT	---	1	1	AU.3	0.00211
ORF7a	59	F59del	TTT	---	1	1	AY.104	0.001984
ORF7a	59	F59del	TTT	---	1	1	AY.105	0.000643
ORF7a	59	F59del	TTT	---	1	1	AY.11	0.001339
ORF7a	59	F59del	TTT	---	1	1	AY.16.1	0.00047
ORF7a	59	F59del	TTT	---	1	1	AY.38	0.000499
ORF7a	59	F59del	TTT	---	1	1	AY.46.3	0.000934
ORF7a	59	F59del	TTT	---	1	1	AY.81	0.001992
ORF7a	59	F59del	TTT	---	1	1	AY.89	0.004902
ORF7a	59	F59del	TTT	---	1	1	AY.94	0.000443
ORF7a	59	F59del	TTT	---	1	1	AZ.2	0.000821
ORF7a	59	F59del	TTT	---	1	1	B	0.000128
ORF7a	59	F59del	TTT	---	1	1	B.1.1.10	0.001115
ORF7a	59	F59del	TTT	---	1	1	B.1.1.157	0.000913
ORF7a	59	F59del	TTT	---	1	1	B.1.1.174	0.003378
ORF7a	59	F59del	TTT	---	1	1	B.1.1.192	0.002309
ORF7a	59	F59del	TTT	---	1	1	B.1.1.194	0.00495
ORF7a	59	F59del	TTT	---	1	1	B.1.1.205	0.003717
ORF7a	59	F59del	TTT	---	1	1	B.1.1.207	0.001182
ORF7a	59	F59del	TTT	---	1	1	B.1.1.209	0.008929
ORF7a	59	F59del	TTT	---	1	1	B.1.1.240	0.004695
ORF7a	59	F59del	TTT	---	1	1	B.1.1.241	0.00207
ORF7a	59	F59del	TTT	---	1	1	B.1.1.277	0.000759
ORF7a	59	F59del	TTT	---	1	1	B.1.1.298	0.000862
ORF7a	59	F59del	TTT	---	1	1	B.1.1.303	0.002762
ORF7a	59	F59del	TTT	---	1	1	B.1.1.311	0.000358
ORF7a	59	F59del	TTT	---	1	1	B.1.1.329	0.003846
ORF7a	59	F59del	TTT	---	1	1	B.1.1.348	0.000796
ORF7a	59	F59del	TTT	---	1	1	B.1.1.366	0.015873
ORF7a	59	F59del	TTT	---	1	1	B.1.1.368	0.003086
ORF7a	59	F59del	TTT	---	1	1	B.1.1.376	0.005952
ORF7a	59	F59del	TTT	---	1	1	B.1.1.39	0.00051
ORF7a	59	F59del	TTT	---	1	1	B.1.1.409	0.002833
ORF7a	59	F59del	TTT	---	1	1	B.1.1.432	0.001266
ORF7a	59	F59del	TTT	---	1	1	B.1.1.434	0.000349
ORF7a	59	F59del	TTT	---	1	1	B.1.1.437	0.010417
ORF7a	59	F59del	TTT	---	1	1	B.1.1.486	0.001577
ORF7a	59	F59del	TTT	---	1	1	B.1.1.525	0.005464
ORF7a	59	F59del	TTT	---	1	1	B.1.1.70	0.000341
ORF7a	59	F59del	TTT	---	1	1	B.1.115	0.021739
ORF7a	59	F59del	TTT	---	1	1	B.1.128	0.000635
ORF7a	59	F59del	TTT	---	1	1	B.1.140	0.018868
ORF7a	59	F59del	TTT	---	1	1	B.1.160.26	0.002421
ORF7a	59	F59del	TTT	---	1	1	B.1.177.12	0.000152
ORF7a	59	F59del	TTT	---	1	1	B.1.177.15	0.000631
ORF7a	59	F59del	TTT	---	1	1	B.1.177.4	0.000211
ORF7a	59	F59del	TTT	---	1	1	B.1.177.50	0.004695
ORF7a	59	F59del	TTT	---	1	1	B.1.177.53	0.002392
ORF7a	59	F59del	TTT	---	1	1	B.1.177.7	0.000165
ORF7a	59	F59del	TTT	---	1	1	B.1.177.8	0.000752
ORF7a	59	F59del	TTT	---	1	1	B.1.177.83	0.001481
ORF7a	59	F59del	TTT	---	1	1	B.1.177.9	0.001332
ORF7a	59	F59del	TTT	---	1	1	B.1.236	0.002053
ORF7a	59	F59del	TTT	---	1	1	B.1.240	0.000216
ORF7a	59	F59del	TTT	---	1	1	B.1.265	0.001271
ORF7a	59	F59del	TTT	---	1	1	B.1.320	0.001245
ORF7a	59	F59del	TTT	---	1	1	B.1.351.3	0.000876
ORF7a	59	F59del	TTT	---	1	1	B.1.36.19	0.009259
ORF7a	59	F59del	TTT	---	1	1	B.1.36.35	0.002604
ORF7a	59	F59del	TTT	---	1	1	B.1.361	0.001289
ORF7a	59	F59del	TTT	---	1	1	B.1.371	0.001122
ORF7a	59	F59del	TTT	---	1	1	B.1.389	0.001002
ORF7a	59	F59del	TTT	---	1	1	B.1.406	0.006061
ORF7a	59	F59del	TTT	---	1	1	B.1.409	0.000781
ORF7a	59	F59del	TTT	---	1	1	B.1.416.1	0.001563
ORF7a	59	F59del	TTT	---	1	1	B.1.438.1	0.000107
ORF7a	59	F59del	TTT	---	1	1	B.1.459	0.004082
ORF7a	59	F59del	TTT	---	1	1	B.1.466.2	0.000391
ORF7a	59	F59del	TTT	---	1	1	B.1.468	0.005714
ORF7a	59	F59del	TTT	---	1	1	B.1.517	0.000427
ORF7a	59	F59del	TTT	---	1	1	B.1.534	0.0125
ORF7a	59	F59del	TTT	---	1	1	B.1.535	0.028571
ORF7a	59	F59del	TTT	---	1	1	B.1.564	0.000426
ORF7a	59	F59del	TTT	---	1	1	B.1.565	0.00081
ORF7a	59	F59del	TTT	---	1	1	B.1.568	0.001111
ORF7a	59	F59del	TTT	---	1	1	B.1.577	0.000687
ORF7a	59	F59del	TTT	---	1	1	B.1.609	0.000479
ORF7a	59	F59del	TTT	---	1	1	B.1.623	0.000536
ORF7a	59	F59del	TTT	---	1	1	B.1.638	0.052632
ORF7a	59	F59del	TTT	---	1	1	B.1.9.1	0.032258
ORF7a	59	F59del	TTT	---	1	1	B.11	0.005128
ORF7a	59	F59del	TTT	---	1	1	B.39	0.002331
ORF7a	59	F59del	TTT	---	1	1	C.28	0.04
ORF7a	59	F59del	TTT	---	1	1	K.3	0.006173
ORF7a	59	F59del	TTT	---	1	1	P.1.1	0.000318
ORF7a	59	F59del	TTT	---	1	1	P.1.13	0.000898
ORF7a	59	F59del	TTT	---	1	1	P.1.17	0.000162
ORF7a	59	F59del	TTT	---	1	1	P.1.3	0.034483
ORF7a	59	F59del	TTT	---	1	1	P.1.4	0.000977
ORF7a	59	F59del	TTT	---	1	1	Q.7	0.001111
ORF7a	59	F59del	TTT	---	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.