CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = F59L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a59F59LnonsynttTttA3011730.57475127568-27570
ORF7a59F59LnonsynTttCtt3011070.35548227568-27570
ORF7a59F59LnonsynttTttG301130.043189427568-27570
ORF7a59F59LnonsynTtTCtG30130.0099667827568-27570
ORF7a59F59LnonsynTtTCtA30130.0099667827568-27570
ORF7a59F59LnonsynTtTCtC30120.0066445227568-27570

Details of the mutation F59L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a59F59LttTttA173301All0.000033
ORF7a59F59LTttCtt107301All0.00002
ORF7a59F59LttTttG13301All0.000002
ORF7a59F59LTtTCtA3301All0.000001
ORF7a59F59LTtTCtG3301All0.000001
ORF7a59F59LTtTCtC2301All0
ORF7a59F59LttTttA3851B.1.1.70.000034
ORF7a59F59LTttCtt1251B.1.1.70.000011
ORF7a59F59LttTttG151B.1.1.70.000001
ORF7a59F59LttTttA1926AY.250.000114
ORF7a59F59LTttCtt226AY.250.000012
ORF7a59F59LttTttG226AY.250.000012
ORF7a59F59LTtTCtA126AY.250.000006
ORF7a59F59LTtTCtC126AY.250.000006
ORF7a59F59LTtTCtG126AY.250.000006
ORF7a59F59LTttCtt1425AY.440.000085
ORF7a59F59LttTttA1025AY.440.000061
ORF7a59F59LttTttG125AY.440.000006
ORF7a59F59LttTttA1624AY.430.000071
ORF7a59F59LTttCtt724AY.430.000031
ORF7a59F59LttTttG124AY.430.000004
ORF7a59F59LTttCtt1222B.1.617.20.000045
ORF7a59F59LttTttA822B.1.617.20.00003
ORF7a59F59LTtTCtG122B.1.617.20.000004
ORF7a59F59LttTttG122B.1.617.20.000004
ORF7a59F59LttTttA1818AY.1030.000112
ORF7a59F59LTttCtt1317AY.30.000129
ORF7a59F59LttTttA417AY.30.00004
ORF7a59F59LttTttA610AY.40.000009
ORF7a59F59LTttCtt310AY.40.000005
ORF7a59F59LttTttG110AY.40.000002
ORF7a59F59LTttCtt1010B.1.1770.000132
ORF7a59F59LttTttA79B.1.20.000062
ORF7a59F59LTttCtt29B.1.20.000018
ORF7a59F59LTttCtt56AY.1020.000133
ORF7a59F59LttTttA16AY.1020.000027
ORF7a59F59LTttCtt35B.10.000027
ORF7a59F59LttTttA25B.10.000018
ORF7a59F59LttTttA44AY.50.000083
ORF7a59F59LttTttA34B.1.177.210.000229
ORF7a59F59LTtTCtA14B.1.177.210.000076
ORF7a59F59LTtTCtA14B.1.3510.00003
ORF7a59F59LttTttA14B.1.3510.00003
ORF7a59F59LTtTCtC14B.1.3510.00003
ORF7a59F59LTttCtt14B.1.3510.00003
ORF7a59F59LttTttA34P.10.000047
ORF7a59F59LTttCtt14P.10.000016
ORF7a59F59LttTttA33AY.1180.000188
ORF7a59F59LttTttA23AY.1200.000074
ORF7a59F59LTttCtt13AY.1200.000037
ORF7a59F59LttTttA33B.1.1.370.000579
ORF7a59F59LTttCtt220.111111
ORF7a59F59LTttCtt22AD.20.000438
ORF7a59F59LTttCtt22AY.290.000032
ORF7a59F59LttTttG12AY.390.000025
ORF7a59F59LttTttA12AY.390.000025
ORF7a59F59LTttCtt12AY.540.000095
ORF7a59F59LttTttG12AY.540.000095
ORF7a59F59LttTttG12B.1.10.000018
ORF7a59F59LTttCtt12B.1.10.000018
ORF7a59F59LttTttA22B.1.1600.000062
ORF7a59F59LttTttA22B.1.415.10.015152
ORF7a59F59LttTttA12B.400.000364
ORF7a59F59LttTttG12B.400.000364
ORF7a59F59LttTttA11AY.10.000396
ORF7a59F59LTttCtt11AY.1160.000287
ORF7a59F59LttTttA11AY.1170.000085
ORF7a59F59LttTttA11AY.1210.000135
ORF7a59F59LTttCtt11AY.230.00007
ORF7a59F59LttTttA11AY.260.000028
ORF7a59F59LTttCtt11AY.270.000065
ORF7a59F59LttTttA11AY.4.20.000022
ORF7a59F59LttTttA11AY.420.00004
ORF7a59F59LttTttA11AY.46.40.000165
ORF7a59F59LttTttA11AY.610.000105
ORF7a59F59LTttCtt11AY.650.000533
ORF7a59F59LttTttA11AY.740.000116
ORF7a59F59LttTttA11AY.750.000056
ORF7a59F59LttTttA11AY.90.000068
ORF7a59F59LTttCtt11AY.99.20.000092
ORF7a59F59LttTttA11B.1.1.2140.000055
ORF7a59F59LttTttG11B.1.1.2250.007194
ORF7a59F59LttTttG11B.1.1.3030.002762
ORF7a59F59LttTttA11B.1.1.3170.000412
ORF7a59F59LTttCtt11B.1.1.3770.001381
ORF7a59F59LTttCtt11B.1.1.4090.002833
ORF7a59F59LttTttA11B.1.1.500.000679
ORF7a59F59LTttCtt11B.1.1490.003425
ORF7a59F59LttTttA11B.1.177.120.000152
ORF7a59F59LTtTCtG11B.1.177.630.002703
ORF7a59F59LttTttA11B.1.2580.000067
ORF7a59F59LTttCtt11B.1.258.110.000396
ORF7a59F59LTttCtt11B.1.360.000146
ORF7a59F59LTttCtt11B.1.3890.001002
ORF7a59F59LTttCtt11B.1.3980.002976
ORF7a59F59LttTttA11B.1.4290.000024
ORF7a59F59LttTttA11B.1.6300.005236
ORF7a59F59LTttCtt11D.20.000075
ORF7a59F59LttTttA11P.1.40.000977