CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = F54S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a54F54SnonsyntTttCt1751600.91428627553-27555
ORF7a54F54SnonsynTTtAGt175110.062857127553-27555
ORF7a54F54SnonsyntTTtCA17530.017142927553-27555
ORF7a54F54SnonsynTTTAGC17510.0057142927553-27555

Details of the mutation F54S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a54F54StTttCt160175All0.000031
ORF7a54F54STTtAGt11175All0.000002
ORF7a54F54StTTtCA3175All0.000001
ORF7a54F54STTTAGC1175All0
ORF7a54F54StTttCt5555AY.1200.002045
ORF7a54F54StTttCt1522B.1.617.20.000056
ORF7a54F54STTtAGt622B.1.617.20.000023
ORF7a54F54StTTtCA122B.1.617.20.000004
ORF7a54F54StTttCt1919B.1.1.70.000017
ORF7a54F54StTttCt1414AY.430.000062
ORF7a54F54STTtAGt511AY.250.00003
ORF7a54F54StTttCt311AY.250.000018
ORF7a54F54StTTtCA211AY.250.000012
ORF7a54F54STTTAGC111AY.250.000006
ORF7a54F54StTttCt88AY.420.000322
ORF7a54F54StTttCt77B.1.5250.000792
ORF7a54F54StTttCt44AY.1130.00057
ORF7a54F54StTttCt44AY.4.2.10.000596
ORF7a54F54StTttCt33AY.340.000291
ORF7a54F54StTttCt22AY.1190.000071
ORF7a54F54StTttCt22AY.200.000078
ORF7a54F54StTttCt22AY.30.00002
ORF7a54F54StTttCt22AY.40.000003
ORF7a54F54StTttCt22B.1.10.000036
ORF7a54F54StTttCt11AY.1020.000027
ORF7a54F54StTttCt11AY.1170.000085
ORF7a54F54StTttCt11AY.260.000028
ORF7a54F54StTttCt11AY.360.000148
ORF7a54F54StTttCt11AY.50.000021
ORF7a54F54StTttCt11AY.610.000105
ORF7a54F54StTttCt11B0.000128
ORF7a54F54StTttCt11B.1.1.1390.022727
ORF7a54F54StTttCt11B.1.1.2140.000055
ORF7a54F54StTttCt11B.1.1.3720.000689
ORF7a54F54StTttCt11B.1.1770.000013
ORF7a54F54StTttCt11B.1.177.210.000076
ORF7a54F54StTttCt11B.1.3110.000275
ORF7a54F54StTttCt11B.1.4290.000024
ORF7a54F54StTttCt11B.1.6360.006711
ORF7a54F54StTttCt11B.1.6370.000073
ORF7a54F54StTttCt11D.20.000075
ORF7a54F54StTttCt11W.40.001351