CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = C58del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a58C58del2deltGCt--2582150.83333327565-27567
ORF7a58C58del2delTGc--c258400.15503927565-27567
ORF7a58C58del2delTGC--N25820.0077519427565-27567
ORF7a58C58del2delTGC--T25810.0038759727565-27567

Details of the mutation C58del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a58C58del2tGCt--215258All0.000041
ORF7a58C58del2TGc--c40258All0.000008
ORF7a58C58del2TGC--N2258All0
ORF7a58C58del2TGC--T1258All0
ORF7a58C58del2tGCt--7883B.1.1.70.00007
ORF7a58C58del2TGc--c383B.1.1.70.000003
ORF7a58C58del2TGC--N183B.1.1.70.000001
ORF7a58C58del2TGC--T183B.1.1.70.000001
ORF7a58C58del2tGCt--2228AY.40.000034
ORF7a58C58del2TGc--c528AY.40.000008
ORF7a58C58del2TGC--N128AY.40.000002
ORF7a58C58del2tGCt--1517B.1.5260.000353
ORF7a58C58del2TGc--c217B.1.5260.000047
ORF7a58C58del2tGCt--1313AY.250.000078
ORF7a58C58del2tGCt--1013AY.30.000099
ORF7a58C58del2TGc--c313AY.30.00003
ORF7a58C58del2tGCt--1213B.1.1770.000158
ORF7a58C58del2TGc--c113B.1.1770.000013
ORF7a58C58del2tGCt--1212B.1.214.20.007194
ORF7a58C58del2tGCt--1010AY.290.000158
ORF7a58C58del2tGCt--1010B.1.177.560.006676
ORF7a58C58del2tGCt--59B.1.617.20.000019
ORF7a58C58del2TGc--c49B.1.617.20.000015
ORF7a58C58del2tGCt--77AY.440.000043
ORF7a58C58del2TGc--c56AY.50.000103
ORF7a58C58del2tGCt--16AY.50.000021
ORF7a58C58del2TGc--c23AY.1020.000053
ORF7a58C58del2tGCt--13AY.1020.000027
ORF7a58C58del2TGc--c23AY.1030.000012
ORF7a58C58del2tGCt--13AY.1030.000006
ORF7a58C58del2tGCt--23AY.430.000009
ORF7a58C58del2TGc--c13AY.430.000004
ORF7a58C58del2TGc--c33AY.70.000588
ORF7a58C58del2tGCt--22AY.1210.000271
ORF7a58C58del2TGc--c12AY.260.000028
ORF7a58C58del2tGCt--12AY.260.000028
ORF7a58C58del2TGc--c22AY.460.000208
ORF7a58C58del2tGCt--22B.10.000018
ORF7a58C58del2tGCt--11AY.1130.000142
ORF7a58C58del2tGCt--11AY.1170.000085
ORF7a58C58del2TGc--c11AY.140.000088
ORF7a58C58del2TGc--c11AY.230.00007
ORF7a58C58del2tGCt--11AY.390.000025
ORF7a58C58del2TGc--c11AY.4.20.000022
ORF7a58C58del2tGCt--11AY.420.00004
ORF7a58C58del2tGCt--11AY.46.60.000072
ORF7a58C58del2TGc--c11AY.7.20.000559
ORF7a58C58del2TGc--c11B.1.1.700.000341
ORF7a58C58del2tGCt--11B.1.160.260.002421
ORF7a58C58del2TGc--c11B.1.177.50.001242
ORF7a58C58del2tGCt--11B.1.2210.000071
ORF7a58C58del2tGCt--11B.1.5250.000113
ORF7a58C58del2tGCt--11B.1.617.10.000129
ORF7a58C58del2tGCt--11B.1.6230.000536
ORF7a58C58del2tGCt--11P.10.000016