CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = C58del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a58C58del1deltgCtg-82660.80487827565-27567
ORF7a58C58del1delTGc-Tc8250.060975627565-27567
ORF7a58C58del1delTgc-gc8250.060975627565-27567
ORF7a58C58del1delTGC-NN8240.048780527565-27567
ORF7a58C58del1delTGCY-T8210.012195127565-27567
ORF7a58C58del1deltGct-c8210.012195127565-27567

Details of the mutation C58del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a58C58del1tgCtg-6682All0.000013
ORF7a58C58del1Tgc-gc582All0.000001
ORF7a58C58del1TGc-Tc582All0.000001
ORF7a58C58del1TGC-NN482All0.000001
ORF7a58C58del1tGct-c182All0
ORF7a58C58del1TGCY-T182All0
ORF7a58C58del1tgCtg-2628AY.40.00004
ORF7a58C58del1Tgc-gc128AY.40.000002
ORF7a58C58del1TGC-NN128AY.40.000002
ORF7a58C58del1tgCtg-1313AY.440.000079
ORF7a58C58del1TGc-Tc55AY.70.00098
ORF7a58C58del1tGct-c15B.1.617.20.000004
ORF7a58C58del1TGC-NN15B.1.617.20.000004
ORF7a58C58del1TGCY-T15B.1.617.20.000004
ORF7a58C58del1tgCtg-15B.1.617.20.000004
ORF7a58C58del1Tgc-gc15B.1.617.20.000004
ORF7a58C58del1tgCtg-33AY.390.000074
ORF7a58C58del1tgCtg-22AY.1100.000225
ORF7a58C58del1tgCtg-22AY.30.00002
ORF7a58C58del1tgCtg-12AY.430.000004
ORF7a58C58del1Tgc-gc12AY.430.000004
ORF7a58C58del1tgCtg-22AY.470.000062
ORF7a58C58del1tgCtg-22B.1.1.1700.002494
ORF7a58C58del1tgCtg-22B.1.1.2140.000111
ORF7a58C58del1tgCtg-22B.1.1.70.000002
ORF7a58C58del1tgCtg-22B.1.1900.02
ORF7a58C58del1tgCtg-11AY.1030.000006
ORF7a58C58del1tgCtg-11AY.1200.000037
ORF7a58C58del1Tgc-gc11AY.250.000006
ORF7a58C58del1TGC-NN11AY.3.10.000085
ORF7a58C58del1tgCtg-11AY.340.000097
ORF7a58C58del1tgCtg-11AY.360.000148
ORF7a58C58del1tgCtg-11AY.50.000021
ORF7a58C58del1Tgc-gc11AY.640.000595
ORF7a58C58del1tgCtg-11AY.940.000443
ORF7a58C58del1tgCtg-11B.1.1280.000635
ORF7a58C58del1TGC-NN11B.1.5960.000087
ORF7a58C58del1tgCtg-11B.1.6370.000073