CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = C58del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a58C58deldelTGC---2842928429127565-27567

Details of the mutation C58del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a58C58delTGC---2842928429All0.005437
ORF7a58C58delTGC---1183211832AY.40.018416
ORF7a58C58delTGC---31993199B.1.617.20.012046
ORF7a58C58delTGC---20222022B.1.1.70.00181
ORF7a58C58delTGC---16661666AY.120.10.534831
ORF7a58C58delTGC---15271527AY.250.009185
ORF7a58C58delTGC---857857AY.430.003797
ORF7a58C58delTGC---609609AY.1030.003781
ORF7a58C58delTGC---437437AY.440.00266
ORF7a58C58delTGC---435435AY.30.004327
ORF7a58C58delTGC---433433AY.260.012258
ORF7a58C58delTGC---380380AY.390.00939
ORF7a58C58delTGC---314314AY.1020.008325
ORF7a58C58delTGC---259259AY.290.004085
ORF7a58C58delTGC---202202B.1.3510.006005
ORF7a58C58delTGC---199199AY.1200.007399
ORF7a58C58delTGC---193193AY.4.20.004186
ORF7a58C58delTGC---184184B.1.177.210.014071
ORF7a58C58delTGC---172172AY.980.013587
ORF7a58C58delTGC---120120AY.1190.004237
ORF7a58C58delTGC---118118AY.7.10.013299
ORF7a58C58delTGC---117117AY.470.003639
ORF7a58C58delTGC---117117B.10.001072
ORF7a58C58delTGC---116116AY.1000.005337
ORF7a58C58delTGC---116116B.1.5260.002727
ORF7a58C58delTGC---9797B.1.1770.001277
ORF7a58C58delTGC---8989AY.46.40.014641
ORF7a58C58delTGC---8080AY.330.005342
ORF7a58C58delTGC---8080B.1.20.000704
ORF7a58C58delTGC---7272AY.46.60.005199
ORF7a58C58delTGC---7070AY.50.001445
ORF7a58C58delTGC---6262AY.3.10.005286
ORF7a58C58delTGC---6060AY.450.007301
ORF7a58C58delTGC---5858AY.39.10.002298
ORF7a58C58delTGC---5757AY.750.003193
ORF7a58C58delTGC---5656AY.1130.007974
ORF7a58C58delTGC---5656AY.420.002253
ORF7a58C58delTGC---5454AY.60.002221
ORF7a58C58delTGC---5252AY.230.003627
ORF7a58C58delTGC---5151AY.200.001982
ORF7a58C58delTGC---5050AY.460.005204
ORF7a58C58delTGC---4949B.1.6210.004337
ORF7a58C58delTGC---4949P.10.000772
ORF7a58C58delTGC---4747AY.540.004481
ORF7a58C58delTGC---4747B.1.1.2840.005048
ORF7a58C58delTGC---4545AY.1070.020969
ORF7a58C58delTGC---4444AY.130.007083
ORF7a58C58delTGC---3737AY.98.10.001792
ORF7a58C58delTGC---3636AY.1100.004057
ORF7a58C58delTGC---3636AY.1180.002255
ORF7a58C58delTGC---3232AY.90.002163
ORF7a58C58delTGC---3131AY.340.003006
ORF7a58C58delTGC---3131AY.70.006076
ORF7a58C58delTGC---3030AY.910.021914
ORF7a58C58delTGC---3030B.1.10.000544
ORF7a58C58delTGC---3030B.1.1.2140.001664
ORF7a58C58delTGC---2929AY.9.20.001065
ORF7a58C58delTGC---2828AY.1170.002366
ORF7a58C58delTGC---2828AY.600.026266
ORF7a58C58delTGC---2828AY.99.20.00258
ORF7a58C58delTGC---2525AY.190.028506
ORF7a58C58delTGC---2424AY.7.20.013423
ORF7a58C58delTGC---2424AY.9.10.002009
ORF7a58C58delTGC---2323AY.300.009102
ORF7a58C58delTGC---2121AY.360.003112
ORF7a58C58delTGC---2121AY.610.0022
ORF7a58C58delTGC---2020AY.1210.002706
ORF7a58C58delTGC---1919AY.1060.006363
ORF7a58C58delTGC---1919B.1.6370.001388
ORF7a58C58delTGC---1717AY.4.50.001827
ORF7a58C58delTGC---1717AY.740.001966
ORF7a58C58delTGC---1717B.1.4270.000858
ORF7a58C58delTGC---1717B.1.4290.0004
ORF7a58C58delTGC---1717R.10.00153
ORF7a58C58delTGC---1616AY.10.006332
ORF7a58C58delTGC---1616B.1.1600.000499
ORF7a58C58delTGC---1616C.370.001857
ORF7a58C58delTGC---1515AY.1160.004302
ORF7a58C58delTGC---1515B.1.1.2220.00306
ORF7a58C58delTGC---1414AY.1110.002564
ORF7a58C58delTGC---1414AY.1140.003235
ORF7a58C58delTGC---1414AY.46.20.008895
ORF7a58C58delTGC---1414B.1.1.2580.045603
ORF7a58C58delTGC---1414B.1.2430.000974
ORF7a58C58delTGC---1414B.1.5960.00122
ORF7a58C58delTGC---1313AY.140.001144
ORF7a58C58delTGC---1313AY.370.004109
ORF7a58C58delTGC---1313AY.680.003559
ORF7a58C58delTGC---1212AY.840.005249
ORF7a58C58delTGC---1212B.1.3240.019262
ORF7a58C58delTGC---1111AY.4.2.10.001639
ORF7a58C58delTGC---1111AY.870.009159
ORF7a58C58delTGC---1111AY.990.011542
ORF7a58C58delTGC---1010AY.120.003161
ORF7a58C58delTGC---1010AY.350.00233
ORF7a58C58delTGC---1010AY.5.40.002767
ORF7a58C58delTGC---1010AY.900.006845
ORF7a58C58delTGC---1010B.1.5250.001132
ORF7a58C58delTGC---1010Q.80.001649
ORF7a58C58delTGC---99AY.1090.006657
ORF7a58C58delTGC---99AY.620.003922
ORF7a58C58delTGC---99B.1.1.5190.000357
ORF7a58C58delTGC---99B.1.258.90.045
ORF7a58C58delTGC---99L.10.017143
ORF7a58C58delTGC---88AY.100.00424
ORF7a58C58delTGC---88AY.270.000518
ORF7a58C58delTGC---88AY.29.10.001764
ORF7a58C58delTGC---88B.1.1.2310.024768
ORF7a58C58delTGC---88P.1.140.000382
ORF7a58C58delTGC---88P.1.150.001859
ORF7a58C58delTGC---77AY.46.50.001389
ORF7a58C58delTGC---77AY.710.003325
ORF7a58C58delTGC---77AY.850.00299
ORF7a58C58delTGC---77B.1.214.20.004197
ORF7a58C58delTGC---66AY.1080.006615
ORF7a58C58delTGC---66AY.46.10.00616
ORF7a58C58delTGC---66AY.650.003198
ORF7a58C58delTGC---66AY.920.001724
ORF7a58C58delTGC---66Q.10.000758
ORF7a58C58delTGC---55AY.160.001898
ORF7a58C58delTGC---55AY.4.40.002046
ORF7a58C58delTGC---55AY.480.002326
ORF7a58C58delTGC---55AY.520.004072
ORF7a58C58delTGC---55AY.660.005348
ORF7a58C58delTGC---55AY.800.005643
ORF7a58C58delTGC---55AY.950.003805
ORF7a58C58delTGC---55B.1.1.560.089286
ORF7a58C58delTGC---55B.1.3750.004098
ORF7a58C58delTGC---55B.1.5950.001305
ORF7a58C58delTGC---55B.1.700.121951
ORF7a58C58delTGC---55P.20.000933
ORF7a58C58delTGC---44A0.001548
ORF7a58C58delTGC---44AY.34.10.00204
ORF7a58C58delTGC---44AY.590.002119
ORF7a58C58delTGC---44AY.730.002661
ORF7a58C58delTGC---44B.1.2340.000528
ORF7a58C58delTGC---44D.20.0003
ORF7a58C58delTGC---33AY.1010.001471
ORF7a58C58delTGC---33AY.240.001293
ORF7a58C58delTGC---33AY.4.30.002525
ORF7a58C58delTGC---33AY.400.002893
ORF7a58C58delTGC---33AY.410.000882
ORF7a58C58delTGC---33AY.5.30.001012
ORF7a58C58delTGC---33AY.530.000863
ORF7a58C58delTGC---33AY.690.00056
ORF7a58C58delTGC---33AY.75.10.000541
ORF7a58C58delTGC---33AY.790.003632
ORF7a58C58delTGC---33AY.860.00249
ORF7a58C58delTGC---33AY.880.002653
ORF7a58C58delTGC---33AY.930.000819
ORF7a58C58delTGC---33B.1.1.1210.007282
ORF7a58C58delTGC---33B.1.1.250.001706
ORF7a58C58delTGC---33B.1.1.3180.000905
ORF7a58C58delTGC---33B.1.160.160.002788
ORF7a58C58delTGC---33B.1.177.570.000843
ORF7a58C58delTGC---33B.1.177.60.00293
ORF7a58C58delTGC---33B.1.177.600.000655
ORF7a58C58delTGC---33B.1.177.810.000568
ORF7a58C58delTGC---33B.1.2580.0002
ORF7a58C58delTGC---33B.1.351.20.000908
ORF7a58C58delTGC---33B.1.360.000438
ORF7a58C58delTGC---33B.1.5750.00091
ORF7a58C58delTGC---33B.1.5820.001472
ORF7a58C58delTGC---33B.1.6260.017143
ORF7a58C58delTGC---33P.1.160.001122
ORF7a58C58delTGC---22A.280.005291
ORF7a58C58delTGC---22AD.20.000438
ORF7a58C58delTGC---22AY.116.10.000623
ORF7a58C58delTGC---22AY.120.20.002571
ORF7a58C58delTGC---22AY.120.2.10.000997
ORF7a58C58delTGC---22AY.20.000712
ORF7a58C58delTGC---22AY.220.004184
ORF7a58C58delTGC---22AY.39.20.003082
ORF7a58C58delTGC---22AY.490.00639
ORF7a58C58delTGC---22AY.510.001818
ORF7a58C58delTGC---22AY.570.001312
ORF7a58C58delTGC---22AY.640.00119
ORF7a58C58delTGC---22AY.700.000417
ORF7a58C58delTGC---22AY.80.001212
ORF7a58C58delTGC---22B.1.1.10.000653
ORF7a58C58delTGC---22B.1.1.2200.003717
ORF7a58C58delTGC---22B.1.1.370.000386
ORF7a58C58delTGC---22B.1.1.3720.001377
ORF7a58C58delTGC---22B.1.1.5210.010695
ORF7a58C58delTGC---22B.1.177.100.001756
ORF7a58C58delTGC---22B.1.177.160.001329
ORF7a58C58delTGC---22B.1.177.430.002954
ORF7a58C58delTGC---22B.1.177.550.004662
ORF7a58C58delTGC---22B.1.177.860.000367
ORF7a58C58delTGC---22B.1.2210.000142
ORF7a58C58delTGC---22B.1.258.110.000793
ORF7a58C58delTGC---22B.1.2640.024691
ORF7a58C58delTGC---22B.1.3110.000549
ORF7a58C58delTGC---22B.1.3690.00057
ORF7a58C58delTGC---22B.1.416.10.003125
ORF7a58C58delTGC---22B.1.4700.002809
ORF7a58C58delTGC---22B.1.617.30.00597
ORF7a58C58delTGC---22B.1.621.10.001012
ORF7a58C58delTGC---22C.36.30.001134
ORF7a58C58delTGC---22P.1.17.10.00175
ORF7a58C58delTGC---22P.1.20.002312
ORF7a58C58delTGC---11A.10.000282
ORF7a58C58delTGC---11A.2.5.30.010309
ORF7a58C58delTGC---11A.23.10.000704
ORF7a58C58delTGC---11AU.30.00211
ORF7a58C58delTGC---11AY.1040.001984
ORF7a58C58delTGC---11AY.1050.000643
ORF7a58C58delTGC---11AY.110.001339
ORF7a58C58delTGC---11AY.320.000532
ORF7a58C58delTGC---11AY.380.000499
ORF7a58C58delTGC---11AY.720.001361
ORF7a58C58delTGC---11AY.810.001992
ORF7a58C58delTGC---11AY.890.004902
ORF7a58C58delTGC---11AY.940.000443
ORF7a58C58delTGC---11AZ.20.000821
ORF7a58C58delTGC---11B0.000128
ORF7a58C58delTGC---11B.1.1.1570.000913
ORF7a58C58delTGC---11B.1.1.1740.003378
ORF7a58C58delTGC---11B.1.1.1920.002309
ORF7a58C58delTGC---11B.1.1.1940.00495
ORF7a58C58delTGC---11B.1.1.2050.003717
ORF7a58C58delTGC---11B.1.1.2070.001182
ORF7a58C58delTGC---11B.1.1.2090.008929
ORF7a58C58delTGC---11B.1.1.2400.004695
ORF7a58C58delTGC---11B.1.1.2410.00207
ORF7a58C58delTGC---11B.1.1.2770.000759
ORF7a58C58delTGC---11B.1.1.2980.000862
ORF7a58C58delTGC---11B.1.1.3030.002762
ORF7a58C58delTGC---11B.1.1.3110.000358
ORF7a58C58delTGC---11B.1.1.330.000421
ORF7a58C58delTGC---11B.1.1.3480.000796
ORF7a58C58delTGC---11B.1.1.3660.015873
ORF7a58C58delTGC---11B.1.1.4320.001266
ORF7a58C58delTGC---11B.1.1.4370.010417
ORF7a58C58delTGC---11B.1.1.5250.005464
ORF7a58C58delTGC---11B.1.1.700.000341
ORF7a58C58delTGC---11B.1.1150.021739
ORF7a58C58delTGC---11B.1.1400.018868
ORF7a58C58delTGC---11B.1.177.150.000631
ORF7a58C58delTGC---11B.1.177.40.000211
ORF7a58C58delTGC---11B.1.177.500.004695
ORF7a58C58delTGC---11B.1.177.530.002392
ORF7a58C58delTGC---11B.1.177.620.001192
ORF7a58C58delTGC---11B.1.177.630.002703
ORF7a58C58delTGC---11B.1.177.70.000165
ORF7a58C58delTGC---11B.1.177.80.000752
ORF7a58C58delTGC---11B.1.177.830.001481
ORF7a58C58delTGC---11B.1.2360.002053
ORF7a58C58delTGC---11B.1.2400.000216
ORF7a58C58delTGC---11B.1.258.170.000104
ORF7a58C58delTGC---11B.1.2650.001271
ORF7a58C58delTGC---11B.1.351.30.000876
ORF7a58C58delTGC---11B.1.36.350.002604
ORF7a58C58delTGC---11B.1.3710.001122
ORF7a58C58delTGC---11B.1.3890.001002
ORF7a58C58delTGC---11B.1.4010.008197
ORF7a58C58delTGC---11B.1.4060.006061
ORF7a58C58delTGC---11B.1.438.10.000107
ORF7a58C58delTGC---11B.1.4590.004082
ORF7a58C58delTGC---11B.1.466.20.000391
ORF7a58C58delTGC---11B.1.4680.005714
ORF7a58C58delTGC---11B.1.4970.000315
ORF7a58C58delTGC---11B.1.5170.000427
ORF7a58C58delTGC---11B.1.5340.0125
ORF7a58C58delTGC---11B.1.5350.028571
ORF7a58C58delTGC---11B.1.5640.000426
ORF7a58C58delTGC---11B.1.5650.00081
ORF7a58C58delTGC---11B.1.5680.001111
ORF7a58C58delTGC---11B.1.5760.000907
ORF7a58C58delTGC---11B.1.5770.000687
ORF7a58C58delTGC---11B.1.6090.000479
ORF7a58C58delTGC---11B.1.617.10.000129
ORF7a58C58delTGC---11B.1.6270.00202
ORF7a58C58delTGC---11B.1.6380.052632
ORF7a58C58delTGC---11B.1.9.10.032258
ORF7a58C58delTGC---11B.110.005128
ORF7a58C58delTGC---11B.390.002331
ORF7a58C58delTGC---11C.280.04
ORF7a58C58delTGC---11K.30.006173
ORF7a58C58delTGC---11P.1.10.000318
ORF7a58C58delTGC---11P.1.130.000898
ORF7a58C58delTGC---11P.1.170.000162
ORF7a58C58delTGC---11P.1.30.034483
ORF7a58C58delTGC---11P.1.40.000977
ORF7a58C58delTGC---11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.