CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = C58S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a58C58SnonsynTgcAgc118750.63559327565-27567
ORF7a58C58SnonsyntGCtCT118190.16101727565-27567
ORF7a58C58SnonsynTgCAgT118120.10169527565-27567
ORF7a58C58SnonsyntGctCc118110.093220327565-27567
ORF7a58C58SnonsyntGCtCG11810.0084745827565-27567

Details of the mutation C58S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a58C58STgcAgc75118All0.000014
ORF7a58C58StGCtCT19118All0.000004
ORF7a58C58STgCAgT12118All0.000002
ORF7a58C58StGctCc11118All0.000002
ORF7a58C58StGCtCG1118All0
ORF7a58C58STgcAgc3036B.1.1.70.000027
ORF7a58C58StGctCc336B.1.1.70.000003
ORF7a58C58StGCtCT236B.1.1.70.000002
ORF7a58C58STgCAgT136B.1.1.70.000001
ORF7a58C58STgcAgc99AY.40.000014
ORF7a58C58STgCAgT78B.1.3510.000208
ORF7a58C58StGCtCT18B.1.3510.00003
ORF7a58C58StGctCc37AY.250.000018
ORF7a58C58StGCtCT27AY.250.000012
ORF7a58C58STgCAgT17AY.250.000006
ORF7a58C58STgcAgc17AY.250.000006
ORF7a58C58STgcAgc37B.1.617.20.000011
ORF7a58C58StGctCc27B.1.617.20.000008
ORF7a58C58STgCAgT17B.1.617.20.000004
ORF7a58C58StGCtCT17B.1.617.20.000004
ORF7a58C58STgcAgc66AY.290.000095
ORF7a58C58STgcAgc240.111111
ORF7a58C58STgCAgT240.111111
ORF7a58C58StGCtCT34B.1.10.000054
ORF7a58C58STgcAgc14B.1.10.000018
ORF7a58C58STgcAgc34B.1.1770.00004
ORF7a58C58StGCtCT14B.1.1770.000013
ORF7a58C58STgcAgc33AY.260.000085
ORF7a58C58STgcAgc33AY.3.10.000256
ORF7a58C58STgcAgc23B.10.000018
ORF7a58C58StGCtCT13B.10.000009
ORF7a58C58StGCtCT22B.1.36.10.002281
ORF7a58C58StGctCc11AY.10.000396
ORF7a58C58STgcAgc11AY.1020.000027
ORF7a58C58STgcAgc11AY.1030.000006
ORF7a58C58STgcAgc11AY.1060.000335
ORF7a58C58STgcAgc11AY.1200.000037
ORF7a58C58STgcAgc11AY.230.00007
ORF7a58C58STgcAgc11B.1.1.10.000327
ORF7a58C58StGCtCT11B.1.1.1890.001513
ORF7a58C58StGCtCT11B.1.1.2820.011628
ORF7a58C58StGCtCT11B.1.1.3050.003861
ORF7a58C58STgcAgc11B.1.1.5190.00004
ORF7a58C58STgcAgc11B.1.177.120.000152
ORF7a58C58StGctCc11B.1.177.210.000076
ORF7a58C58STgcAgc11B.1.177.330.001645
ORF7a58C58STgcAgc11B.1.20.000009
ORF7a58C58StGCtCT11B.1.360.000146
ORF7a58C58StGCtCG11B.1.4160.001269
ORF7a58C58StGCtCT11B.1.4380.006536
ORF7a58C58StGCtCT11B.1.5250.000113
ORF7a58C58StGctCc11D.20.000075
ORF7a58C58STgcAgc11P.1.140.000048
ORF7a58C58STgcAgc11Q.10.000126