CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = C58L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a58C58LnonsynTGCCTT1780.47058827565-27567
ORF7a58C58LnonsyntGCtTA1730.17647127565-27567
ORF7a58C58LnonsynTGcCTc1720.11764727565-27567
ORF7a58C58LnonsynTGCCTA1720.11764727565-27567
ORF7a58C58LnonsyntGCtTG1720.11764727565-27567

Details of the mutation C58L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a58C58LTGCCTT817All0.000002
ORF7a58C58LtGCtTA317All0.000001
ORF7a58C58LtGCtTG217All0
ORF7a58C58LTGCCTA217All0
ORF7a58C58LTGcCTc217All0
ORF7a58C58LtGCtTA15AY.250.000006
ORF7a58C58LTGCCTT15AY.250.000006
ORF7a58C58LtGCtTG15AY.250.000006
ORF7a58C58LTGCCTA15AY.250.000006
ORF7a58C58LTGcCTc15AY.250.000006
ORF7a58C58LTGCCTT45B.1.617.20.000015
ORF7a58C58LTGcCTc15B.1.617.20.000004
ORF7a58C58LtGCtTA12B.1.1.70.000001
ORF7a58C58LtGCtTG12B.1.1.70.000001
ORF7a58C58LTGCCTT12B.1.177.210.000076
ORF7a58C58LTGCCTA12B.1.177.210.000076
ORF7a58C58LTGCCTT11AY.40.000002
ORF7a58C58LTGCCTT11AY.440.000006
ORF7a58C58LtGCtTA11AY.540.000095