CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = A8del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a8A8deldelGCA---64886488127415-27417

Details of the mutation A8del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a8A8delGCA---64886488All0.001241
ORF7a8A8delGCA---58245824B.1.1.70.005214
ORF7a8A8delGCA---179179B.1.177.210.013688
ORF7a8A8delGCA---138138AY.40.000215
ORF7a8A8delGCA---2121AY.290.000331
ORF7a8A8delGCA---1919AY.430.000084
ORF7a8A8delGCA---1818AY.30.000179
ORF7a8A8delGCA---1717B.1.617.20.000064
ORF7a8A8delGCA---1616AY.250.000096
ORF7a8A8delGCA---1414AY.1030.000087
ORF7a8A8delGCA---1414B.10.000128
ORF7a8A8delGCA---1313AY.440.000079
ORF7a8A8delGCA---1212AY.390.000297
ORF7a8A8delGCA---99B.1.1.2140.000499
ORF7a8A8delGCA---99B.1.1.2840.000967
ORF7a8A8delGCA---99C.80.040179
ORF7a8A8delGCA---88P.10.000126
ORF7a8A8delGCA---77AY.1180.000439
ORF7a8A8delGCA---77B.1.1770.000092
ORF7a8A8delGCA---77C.370.000812
ORF7a8A8delGCA---66AY.470.000187
ORF7a8A8delGCA---66B.1.20.000053
ORF7a8A8delGCA---66B.1.5260.000141
ORF7a8A8delGCA---55AY.260.000142
ORF7a8A8delGCA---55B.1.177.440.002595
ORF7a8A8delGCA---55Q.80.000825
ORF7a8A8delGCA---44AY.1060.00134
ORF7a8A8delGCA---44AY.98.10.000194
ORF7a8A8delGCA---44B.1.10.000073
ORF7a8A8delGCA---44B.1.2340.000528
ORF7a8A8delGCA---44B.1.3510.000119
ORF7a8A8delGCA---44B.1.4290.000094
ORF7a8A8delGCA---44P.1.160.001496
ORF7a8A8delGCA---33AY.330.0002
ORF7a8A8delGCA---33B.1.6260.017143
ORF7a8A8delGCA---22A.280.005291
ORF7a8A8delGCA---22AY.1000.000092
ORF7a8A8delGCA---22AY.1190.000071
ORF7a8A8delGCA---22AY.200.000078
ORF7a8A8delGCA---22AY.29.10.000441
ORF7a8A8delGCA---22AY.3.10.000171
ORF7a8A8delGCA---22AY.420.00008
ORF7a8A8delGCA---22AY.750.000112
ORF7a8A8delGCA---22AY.9.20.000073
ORF7a8A8delGCA---22B.1.1600.000062
ORF7a8A8delGCA---22B.1.177.860.000367
ORF7a8A8delGCA---22B.1.258.110.000793
ORF7a8A8delGCA---22B.1.360.000292
ORF7a8A8delGCA---22B.1.36.380.003284
ORF7a8A8delGCA---22B.1.5250.000226
ORF7a8A8delGCA---22B.1.5960.000174
ORF7a8A8delGCA---22B.1.6210.000177
ORF7a8A8delGCA---22B.1.6370.000146
ORF7a8A8delGCA---22Q.10.000253
ORF7a8A8delGCA---11A0.000387
ORF7a8A8delGCA---11A.20.000662
ORF7a8A8delGCA---11AK.10.012658
ORF7a8A8delGCA---11AY.1070.000466
ORF7a8A8delGCA---11AY.1080.001103
ORF7a8A8delGCA---11AY.1090.00074
ORF7a8A8delGCA---11AY.1200.000037
ORF7a8A8delGCA---11AY.120.10.000321
ORF7a8A8delGCA---11AY.1210.000135
ORF7a8A8delGCA---11AY.320.000532
ORF7a8A8delGCA---11AY.340.000097
ORF7a8A8delGCA---11AY.4.20.000022
ORF7a8A8delGCA---11AY.450.000122
ORF7a8A8delGCA---11AY.540.000095
ORF7a8A8delGCA---11AY.660.00107
ORF7a8A8delGCA---11AY.790.001211
ORF7a8A8delGCA---11AY.840.000437
ORF7a8A8delGCA---11AY.90.000068
ORF7a8A8delGCA---11AY.940.000443
ORF7a8A8delGCA---11AY.990.001049
ORF7a8A8delGCA---11B.1.1.2070.001182
ORF7a8A8delGCA---11B.1.1.2220.000204
ORF7a8A8delGCA---11B.1.1.2580.003257
ORF7a8A8delGCA---11B.1.1.5190.00004
ORF7a8A8delGCA---11B.1.1150.021739
ORF7a8A8delGCA---11B.1.1610.017241
ORF7a8A8delGCA---11B.1.177.810.000189
ORF7a8A8delGCA---11B.1.214.20.0006
ORF7a8A8delGCA---11B.1.2210.000071
ORF7a8A8delGCA---11B.1.2400.000216
ORF7a8A8delGCA---11B.1.4270.00005
ORF7a8A8delGCA---11B.1.466.20.000391
ORF7a8A8delGCA---11B.1.4680.005714
ORF7a8A8delGCA---11B.1.4700.001404
ORF7a8A8delGCA---11B.1.617.10.000129
ORF7a8A8delGCA---11B.1.617.30.002985
ORF7a8A8delGCA---11B.1.6200.000946
ORF7a8A8delGCA---11B.1.6300.005236
ORF7a8A8delGCA---11C.36.30.000567
ORF7a8A8delGCA---11P.20.000187
ORF7a8A8delGCA---11Q.50.016949
ORF7a8A8delGCA---11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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