CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 8 | A8T | nonsyn | Gca | Aca | 3061 | 3061 | 1 | 27415-27417 |
Details of the mutation A8T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 8 | A8T | Gca | Aca | 3061 | 3061 | All | 0.000585 |
ORF7a | 8 | A8T | Gca | Aca | 1148 | 1148 | AY.110 | 0.129367 |
ORF7a | 8 | A8T | Gca | Aca | 360 | 360 | B.1.258 | 0.023957 |
ORF7a | 8 | A8T | Gca | Aca | 300 | 300 | B.1.2 | 0.002642 |
ORF7a | 8 | A8T | Gca | Aca | 217 | 217 | B.1.1.7 | 0.000194 |
ORF7a | 8 | A8T | Gca | Aca | 126 | 126 | B.1.120 | 0.969231 |
ORF7a | 8 | A8T | Gca | Aca | 117 | 117 | AY.43 | 0.000518 |
ORF7a | 8 | A8T | Gca | Aca | 114 | 114 | AY.25 | 0.000686 |
ORF7a | 8 | A8T | Gca | Aca | 70 | 70 | B.1.617.2 | 0.000264 |
ORF7a | 8 | A8T | Gca | Aca | 64 | 64 | B.1.243 | 0.004453 |
ORF7a | 8 | A8T | Gca | Aca | 56 | 56 | AY.4 | 0.000087 |
ORF7a | 8 | A8T | Gca | Aca | 54 | 54 | AY.44 | 0.000329 |
ORF7a | 8 | A8T | Gca | Aca | 44 | 44 | AY.46.6 | 0.003177 |
ORF7a | 8 | A8T | Gca | Aca | 33 | 33 | B.1.177.86 | 0.006054 |
ORF7a | 8 | A8T | Gca | Aca | 27 | 27 | B.1 | 0.000247 |
ORF7a | 8 | A8T | Gca | Aca | 24 | 24 | P.1 | 0.000378 |
ORF7a | 8 | A8T | Gca | Aca | 16 | 16 | AY.103 | 0.000099 |
ORF7a | 8 | A8T | Gca | Aca | 14 | 14 | B.1.177.19 | 0.020029 |
ORF7a | 8 | A8T | Gca | Aca | 14 | 14 | B.1.36 | 0.002043 |
ORF7a | 8 | A8T | Gca | Aca | 13 | 13 | B.1.596 | 0.001133 |
ORF7a | 8 | A8T | Gca | Aca | 12 | 12 | AY.13 | 0.001932 |
ORF7a | 8 | A8T | Gca | Aca | 12 | 12 | B.1.177 | 0.000158 |
ORF7a | 8 | A8T | Gca | Aca | 10 | 10 | B.1.1 | 0.000181 |
ORF7a | 8 | A8T | Gca | Aca | 9 | 9 | AY.37 | 0.002845 |
ORF7a | 8 | A8T | Gca | Aca | 9 | 9 | AY.4.2 | 0.000195 |
ORF7a | 8 | A8T | Gca | Aca | 9 | 9 | AY.75 | 0.000504 |
ORF7a | 8 | A8T | Gca | Aca | 9 | 9 | B.1.621 | 0.000797 |
ORF7a | 8 | A8T | Gca | Aca | 7 | 7 | AY.20 | 0.000272 |
ORF7a | 8 | A8T | Gca | Aca | 7 | 7 | AY.96 | 0.014523 |
ORF7a | 8 | A8T | Gca | Aca | 7 | 7 | P.1.7 | 0.002235 |
ORF7a | 8 | A8T | Gca | Aca | 6 | 6 | AY.106 | 0.002009 |
ORF7a | 8 | A8T | Gca | Aca | 6 | 6 | AY.46 | 0.000624 |
ORF7a | 8 | A8T | Gca | Aca | 6 | 6 | B.1.1.222 | 0.001224 |
ORF7a | 8 | A8T | Gca | Aca | 6 | 6 | B.1.177.51 | 0.027397 |
ORF7a | 8 | A8T | Gca | Aca | 5 | 5 | AY.23 | 0.000349 |
ORF7a | 8 | A8T | Gca | Aca | 5 | 5 | AY.3 | 0.00005 |
ORF7a | 8 | A8T | Gca | Aca | 5 | 5 | AY.39 | 0.000124 |
ORF7a | 8 | A8T | Gca | Aca | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 8 | A8T | Gca | Aca | 4 | 4 | AY.5.3 | 0.00135 |
ORF7a | 8 | A8T | Gca | Aca | 4 | 4 | AY.84 | 0.00175 |
ORF7a | 8 | A8T | Gca | Aca | 4 | 4 | C.14 | 0.017316 |
ORF7a | 8 | A8T | Gca | Aca | 4 | 4 | P.1.14 | 0.000191 |
ORF7a | 8 | A8T | Gca | Aca | 3 | 3 | AY.42 | 0.000121 |
ORF7a | 8 | A8T | Gca | Aca | 3 | 3 | AY.45 | 0.000365 |
ORF7a | 8 | A8T | Gca | Aca | 3 | 3 | AY.59 | 0.001589 |
ORF7a | 8 | A8T | Gca | Aca | 3 | 3 | AY.73 | 0.001996 |
ORF7a | 8 | A8T | Gca | Aca | 3 | 3 | B.1.1.326 | 0.005282 |
ORF7a | 8 | A8T | Gca | Aca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF7a | 8 | A8T | Gca | Aca | 3 | 3 | B.1.160 | 0.000094 |
ORF7a | 8 | A8T | Gca | Aca | 3 | 3 | Q.8 | 0.000495 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | AY.100 | 0.000092 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | AY.102 | 0.000053 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | AY.117 | 0.000169 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | AY.119 | 0.000071 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | AY.4.5 | 0.000215 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | AY.98 | 0.000158 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | B | 0.000256 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | B.1.1.434 | 0.000697 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | B.1.160.23 | 0.009662 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | B.1.177.58 | 0.002663 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | B.1.36.17 | 0.000988 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | B.1.396 | 0.001411 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | B.1.515 | 0.028986 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | C.11 | 0.021277 |
ORF7a | 8 | A8T | Gca | Aca | 2 | 2 | C.37 | 0.000232 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | A.1 | 0.000282 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AM.4 | 0.003571 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.118 | 0.000063 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.121 | 0.000135 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.16 | 0.00038 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.16.1 | 0.00047 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.29.1 | 0.000221 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.47 | 0.000031 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.72 | 0.001361 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.93 | 0.000273 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | AY.98.1 | 0.000048 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.1.328 | 0.016949 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.1.351 | 0.002793 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.1.378 | 0.007299 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.1.4 | 0.002976 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.214.3 | 0.007143 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.258.24 | 0.010753 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.346 | 0.001311 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.389 | 0.001002 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.541 | 0.004425 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.626 | 0.005714 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | B.1.9.5 | 0.005682 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | C.1 | 0.002392 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | P.7 | 0.004367 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 8 | A8T | Gca | Aca | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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