CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = A8T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a8A8TnonsynGcaAca30613061127415-27417

Details of the mutation A8T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a8A8TGcaAca30613061All0.000585
ORF7a8A8TGcaAca11481148AY.1100.129367
ORF7a8A8TGcaAca360360B.1.2580.023957
ORF7a8A8TGcaAca300300B.1.20.002642
ORF7a8A8TGcaAca217217B.1.1.70.000194
ORF7a8A8TGcaAca126126B.1.1200.969231
ORF7a8A8TGcaAca117117AY.430.000518
ORF7a8A8TGcaAca114114AY.250.000686
ORF7a8A8TGcaAca7070B.1.617.20.000264
ORF7a8A8TGcaAca6464B.1.2430.004453
ORF7a8A8TGcaAca5656AY.40.000087
ORF7a8A8TGcaAca5454AY.440.000329
ORF7a8A8TGcaAca4444AY.46.60.003177
ORF7a8A8TGcaAca3333B.1.177.860.006054
ORF7a8A8TGcaAca2727B.10.000247
ORF7a8A8TGcaAca2424P.10.000378
ORF7a8A8TGcaAca1616AY.1030.000099
ORF7a8A8TGcaAca1414B.1.177.190.020029
ORF7a8A8TGcaAca1414B.1.360.002043
ORF7a8A8TGcaAca1313B.1.5960.001133
ORF7a8A8TGcaAca1212AY.130.001932
ORF7a8A8TGcaAca1212B.1.1770.000158
ORF7a8A8TGcaAca1010B.1.10.000181
ORF7a8A8TGcaAca99AY.370.002845
ORF7a8A8TGcaAca99AY.4.20.000195
ORF7a8A8TGcaAca99AY.750.000504
ORF7a8A8TGcaAca99B.1.6210.000797
ORF7a8A8TGcaAca77AY.200.000272
ORF7a8A8TGcaAca77AY.960.014523
ORF7a8A8TGcaAca77P.1.70.002235
ORF7a8A8TGcaAca66AY.1060.002009
ORF7a8A8TGcaAca66AY.460.000624
ORF7a8A8TGcaAca66B.1.1.2220.001224
ORF7a8A8TGcaAca66B.1.177.510.027397
ORF7a8A8TGcaAca55AY.230.000349
ORF7a8A8TGcaAca55AY.30.00005
ORF7a8A8TGcaAca55AY.390.000124
ORF7a8A8TGcaAca44AY.1130.00057
ORF7a8A8TGcaAca44AY.5.30.00135
ORF7a8A8TGcaAca44AY.840.00175
ORF7a8A8TGcaAca44C.140.017316
ORF7a8A8TGcaAca44P.1.140.000191
ORF7a8A8TGcaAca33AY.420.000121
ORF7a8A8TGcaAca33AY.450.000365
ORF7a8A8TGcaAca33AY.590.001589
ORF7a8A8TGcaAca33AY.730.001996
ORF7a8A8TGcaAca33B.1.1.3260.005282
ORF7a8A8TGcaAca33B.1.1.5190.000119
ORF7a8A8TGcaAca33B.1.1600.000094
ORF7a8A8TGcaAca33Q.80.000495
ORF7a8A8TGcaAca22AY.1000.000092
ORF7a8A8TGcaAca22AY.1020.000053
ORF7a8A8TGcaAca22AY.1170.000169
ORF7a8A8TGcaAca22AY.1190.000071
ORF7a8A8TGcaAca22AY.4.50.000215
ORF7a8A8TGcaAca22AY.50.000041
ORF7a8A8TGcaAca22AY.980.000158
ORF7a8A8TGcaAca22B0.000256
ORF7a8A8TGcaAca22B.1.1.4340.000697
ORF7a8A8TGcaAca22B.1.160.230.009662
ORF7a8A8TGcaAca22B.1.177.580.002663
ORF7a8A8TGcaAca22B.1.36.170.000988
ORF7a8A8TGcaAca22B.1.3960.001411
ORF7a8A8TGcaAca22B.1.5150.028986
ORF7a8A8TGcaAca22C.110.021277
ORF7a8A8TGcaAca22C.370.000232
ORF7a8A8TGcaAca11A.10.000282
ORF7a8A8TGcaAca11AM.40.003571
ORF7a8A8TGcaAca11AY.10.000396
ORF7a8A8TGcaAca11AY.1010.00049
ORF7a8A8TGcaAca11AY.1110.000183
ORF7a8A8TGcaAca11AY.1180.000063
ORF7a8A8TGcaAca11AY.1200.000037
ORF7a8A8TGcaAca11AY.1210.000135
ORF7a8A8TGcaAca11AY.140.000088
ORF7a8A8TGcaAca11AY.160.00038
ORF7a8A8TGcaAca11AY.16.10.00047
ORF7a8A8TGcaAca11AY.290.000016
ORF7a8A8TGcaAca11AY.29.10.000221
ORF7a8A8TGcaAca11AY.320.000532
ORF7a8A8TGcaAca11AY.330.000067
ORF7a8A8TGcaAca11AY.470.000031
ORF7a8A8TGcaAca11AY.70.000196
ORF7a8A8TGcaAca11AY.7.10.000113
ORF7a8A8TGcaAca11AY.720.001361
ORF7a8A8TGcaAca11AY.740.000116
ORF7a8A8TGcaAca11AY.75.10.00018
ORF7a8A8TGcaAca11AY.880.000884
ORF7a8A8TGcaAca11AY.930.000273
ORF7a8A8TGcaAca11AY.98.10.000048
ORF7a8A8TGcaAca11B.1.1.3280.016949
ORF7a8A8TGcaAca11B.1.1.3510.002793
ORF7a8A8TGcaAca11B.1.1.3780.007299
ORF7a8A8TGcaAca11B.1.1.40.002976
ORF7a8A8TGcaAca11B.1.177.440.000519
ORF7a8A8TGcaAca11B.1.214.30.007143
ORF7a8A8TGcaAca11B.1.258.240.010753
ORF7a8A8TGcaAca11B.1.3460.001311
ORF7a8A8TGcaAca11B.1.3890.001002
ORF7a8A8TGcaAca11B.1.4160.001269
ORF7a8A8TGcaAca11B.1.438.10.000107
ORF7a8A8TGcaAca11B.1.5250.000113
ORF7a8A8TGcaAca11B.1.5410.004425
ORF7a8A8TGcaAca11B.1.617.10.000129
ORF7a8A8TGcaAca11B.1.6260.005714
ORF7a8A8TGcaAca11B.1.9.50.005682
ORF7a8A8TGcaAca11C.10.002392
ORF7a8A8TGcaAca11P.70.004367
ORF7a8A8TGcaAca11Q.30.000145
ORF7a8A8TGcaAca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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