CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : Mut = A79del2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a79A79del2delGCc--c148920.62162227628-27630
ORF7a79A79del2delgCCg--148550.37162227628-27630
ORF7a79A79del2delGCC--N14810.0067567627628-27630

Details of the mutation A79del2 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a79A79del2GCc--c92148All0.000018
ORF7a79A79del2gCCg--55148All0.000011
ORF7a79A79del2GCC--N1148All0
ORF7a79A79del2GCc--c5193B.1.1.70.000046
ORF7a79A79del2gCCg--4293B.1.1.70.000038
ORF7a79A79del2GCc--c1111B.1.1770.000145
ORF7a79A79del2gCCg--55AY.1200.000186
ORF7a79A79del2GCc--c44AY.3.10.000341
ORF7a79A79del2GCc--c34AY.40.000005
ORF7a79A79del2gCCg--14AY.40.000002
ORF7a79A79del2GCc--c44B.1.3510.000119
ORF7a79A79del2GCc--c22AY.200.000078
ORF7a79A79del2gCCg--22AY.250.000012
ORF7a79A79del2GCc--c22AY.460.000208
ORF7a79A79del2GCc--c22B.1.177.40.000422
ORF7a79A79del2GCc--c22B.1.20.000018
ORF7a79A79del2gCCg--12B.1.617.20.000004
ORF7a79A79del2GCc--c12B.1.617.20.000004
ORF7a79A79del2GCc--c22P.1.140.000096
ORF7a79A79del2gCCg--12Q.80.000165
ORF7a79A79del2GCc--c12Q.80.000165
ORF7a79A79del2gCCg--11AY.1030.000006
ORF7a79A79del2GCc--c11AY.260.000028
ORF7a79A79del2GCc--c11AY.30.00001
ORF7a79A79del2gCCg--11AY.340.000097
ORF7a79A79del2GCc--c11AY.39.10.00004
ORF7a79A79del2GCC--N11AY.430.000004
ORF7a79A79del2gCCg--11AY.980.000079
ORF7a79A79del2GCc--c11AY.98.10.000048
ORF7a79A79del2GCc--c11B.10.000009
ORF7a79A79del2GCc--c11B.1.1.1350.004695
ORF7a79A79del2GCc--c11B.1.1.370.000193