CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 105 | A105S | nonsyn | Gcg | Tcg | 4330 | 4323 | 0.998383 | 27706-27708 | |
ORF7a | 105 | A105S | nonsyn | GcG | TcT | 4330 | 6 | 0.00138568 | 27706-27708 | |
ORF7a | 105 | A105S | nonsyn | GCG | AGT | 4330 | 1 | 0.000230947 | 27706-27708 |
Details of the mutation A105S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 105 | A105S | Gcg | Tcg | 4323 | 4330 | All | 0.000827 |
ORF7a | 105 | A105S | GcG | TcT | 6 | 4330 | All | 0.000001 |
ORF7a | 105 | A105S | GCG | AGT | 1 | 4330 | All | 0 |
ORF7a | 105 | A105S | Gcg | Tcg | 1928 | 1929 | AY.98.1 | 0.093375 |
ORF7a | 105 | A105S | GcG | TcT | 1 | 1929 | AY.98.1 | 0.000048 |
ORF7a | 105 | A105S | Gcg | Tcg | 552 | 552 | A.2.5.2 | 0.867925 |
ORF7a | 105 | A105S | Gcg | Tcg | 260 | 260 | B.1.1.7 | 0.000233 |
ORF7a | 105 | A105S | Gcg | Tcg | 176 | 176 | AY.4 | 0.000274 |
ORF7a | 105 | A105S | Gcg | Tcg | 159 | 160 | AY.43 | 0.000704 |
ORF7a | 105 | A105S | GcG | TcT | 1 | 160 | AY.43 | 0.000004 |
ORF7a | 105 | A105S | Gcg | Tcg | 138 | 138 | AY.23 | 0.009625 |
ORF7a | 105 | A105S | Gcg | Tcg | 111 | 111 | B.1.617.2 | 0.000418 |
ORF7a | 105 | A105S | Gcg | Tcg | 105 | 105 | AY.9.1 | 0.008791 |
ORF7a | 105 | A105S | Gcg | Tcg | 101 | 101 | AY.26 | 0.002859 |
ORF7a | 105 | A105S | Gcg | Tcg | 67 | 67 | AY.103 | 0.000416 |
ORF7a | 105 | A105S | Gcg | Tcg | 62 | 62 | AY.3 | 0.000617 |
ORF7a | 105 | A105S | Gcg | Tcg | 42 | 42 | AY.98 | 0.003318 |
ORF7a | 105 | A105S | Gcg | Tcg | 38 | 38 | AY.25 | 0.000229 |
ORF7a | 105 | A105S | Gcg | Tcg | 34 | 35 | B.1.1 | 0.000617 |
ORF7a | 105 | A105S | GcG | TcT | 1 | 35 | B.1.1 | 0.000018 |
ORF7a | 105 | A105S | Gcg | Tcg | 35 | 35 | B.1.525 | 0.003961 |
ORF7a | 105 | A105S | Gcg | Tcg | 30 | 30 | AY.42 | 0.001207 |
ORF7a | 105 | A105S | Gcg | Tcg | 27 | 27 | AY.61 | 0.002829 |
ORF7a | 105 | A105S | Gcg | Tcg | 27 | 27 | P.1.14 | 0.001291 |
ORF7a | 105 | A105S | Gcg | Tcg | 25 | 25 | AY.100 | 0.00115 |
ORF7a | 105 | A105S | Gcg | Tcg | 25 | 25 | AY.54 | 0.002384 |
ORF7a | 105 | A105S | Gcg | Tcg | 23 | 23 | B.1 | 0.000211 |
ORF7a | 105 | A105S | Gcg | Tcg | 21 | 23 | B.1.221 | 0.001492 |
ORF7a | 105 | A105S | GcG | TcT | 2 | 23 | B.1.221 | 0.000142 |
ORF7a | 105 | A105S | Gcg | Tcg | 18 | 19 | AY.102 | 0.000477 |
ORF7a | 105 | A105S | GcG | TcT | 1 | 19 | AY.102 | 0.000027 |
ORF7a | 105 | A105S | Gcg | Tcg | 19 | 19 | AY.46 | 0.001978 |
ORF7a | 105 | A105S | Gcg | Tcg | 18 | 18 | AY.44 | 0.00011 |
ORF7a | 105 | A105S | Gcg | Tcg | 17 | 17 | B.1.526 | 0.0004 |
ORF7a | 105 | A105S | Gcg | Tcg | 14 | 14 | B.1.619 | 0.012195 |
ORF7a | 105 | A105S | Gcg | Tcg | 10 | 10 | AY.113 | 0.001424 |
ORF7a | 105 | A105S | Gcg | Tcg | 10 | 10 | P.1 | 0.000158 |
ORF7a | 105 | A105S | Gcg | Tcg | 8 | 8 | AY.39 | 0.000198 |
ORF7a | 105 | A105S | Gcg | Tcg | 8 | 8 | B.1.2 | 0.00007 |
ORF7a | 105 | A105S | Gcg | Tcg | 7 | 7 | AY.39.1 | 0.000277 |
ORF7a | 105 | A105S | Gcg | Tcg | 7 | 7 | AY.47 | 0.000218 |
ORF7a | 105 | A105S | Gcg | Tcg | 7 | 7 | B.1.429 | 0.000165 |
ORF7a | 105 | A105S | Gcg | Tcg | 7 | 7 | B.1.596 | 0.00061 |
ORF7a | 105 | A105S | Gcg | Tcg | 6 | 6 | AY.14 | 0.000528 |
ORF7a | 105 | A105S | Gcg | Tcg | 6 | 6 | C.36.3 | 0.003403 |
ORF7a | 105 | A105S | Gcg | Tcg | 5 | 5 | B.1.427 | 0.000252 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 4 | 0.166667 | |
ORF7a | 105 | A105S | GCG | AGT | 1 | 4 | 0.055556 | |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | A.2.5 | 0.001996 |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | AY.118 | 0.000251 |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | AY.119 | 0.000141 |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | AY.34 | 0.000388 |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | AY.4.2 | 0.000087 |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | AY.69 | 0.000747 |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | AY.80 | 0.004515 |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | B.1.351 | 0.000119 |
ORF7a | 105 | A105S | Gcg | Tcg | 4 | 4 | B.1.628 | 0.001409 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.114 | 0.000693 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.117 | 0.000254 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.120 | 0.000112 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.121 | 0.000406 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.32 | 0.001597 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.46.5 | 0.000595 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.5 | 0.000062 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.55 | 0.002752 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.6 | 0.000123 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.63 | 0.001161 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | AY.9 | 0.000203 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | B.1.177.56 | 0.002003 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | B.1.177.60 | 0.000655 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | B.1.367 | 0.002377 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 105 | A105S | Gcg | Tcg | 3 | 3 | P.1.6 | 0.005837 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.13 | 0.000322 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.28 | 0.003781 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.29 | 0.000032 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.3.1 | 0.000171 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.5.4 | 0.000553 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.75.1 | 0.000361 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.93 | 0.000546 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | AY.99.1 | 0.003106 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B | 0.000256 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.1.28 | 0.000622 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.177 | 0.000026 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.177.80 | 0.003824 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.206 | 0.001631 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.258.17 | 0.000208 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.575 | 0.000607 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.582 | 0.000981 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | B.1.637 | 0.000146 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | C.37 | 0.000232 |
ORF7a | 105 | A105S | Gcg | Tcg | 2 | 2 | P.1.17 | 0.000324 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | A | 0.000387 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.46.2 | 0.000635 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.60 | 0.000938 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.74 | 0.000116 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.82 | 0.001357 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | AY.94 | 0.000443 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.1.153 | 0.001095 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.1.354 | 0.004386 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.298 | 0.002114 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.428 | 0.00102 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.558 | 0.004566 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.597 | 0.00463 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.600 | 0.005848 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.612 | 0.002653 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | B.55 | 0.00295 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | D.2 | 0.000075 |
ORF7a | 105 | A105S | Gcg | Tcg | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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