CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 97 & Codon = taT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a97Y97YsyntaCtaT47724772127682-27684

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a97Y97YtaCtaT47724772All0.000913
ORF7a97Y97YtaCtaT14911491B.1.1.70.001335
ORF7a97Y97YtaCtaT709709AY.470.022054
ORF7a97Y97YtaCtaT501501B.1.617.20.001886
ORF7a97Y97YtaCtaT177177P.20.033035
ORF7a97Y97YtaCtaT9696B.1.177.570.026974
ORF7a97Y97YtaCtaT7878B.1.1.5190.003097
ORF7a97Y97YtaCtaT7777P.1.100.020749
ORF7a97Y97YtaCtaT7272B.1.1600.002246
ORF7a97Y97YtaCtaT7070B.10.000641
ORF7a97Y97YtaCtaT6565AY.1030.000404
ORF7a97Y97YtaCtaT6363AY.40.000098
ORF7a97Y97YtaCtaT6262AD.20.013576
ORF7a97Y97YtaCtaT5757B.1.1.500.038697
ORF7a97Y97YtaCtaT5555B.1.20.000484
ORF7a97Y97YtaCtaT5353P.10.000835
ORF7a97Y97YtaCtaT4848AY.390.001186
ORF7a97Y97YtaCtaT4848B.1.1.2140.002662
ORF7a97Y97YtaCtaT4444B.1.1770.000579
ORF7a97Y97YtaCtaT4444B.1.2580.002928
ORF7a97Y97YtaCtaT4242AY.50.000867
ORF7a97Y97YtaCtaT3939B.1.6370.00285
ORF7a97Y97YtaCtaT3838AY.440.000231
ORF7a97Y97YtaCtaT3232B.1.10.000581
ORF7a97Y97YtaCtaT3131B.1.177.810.005869
ORF7a97Y97YtaCtaT2929B.1.4010.237705
ORF7a97Y97YtaCtaT2727B.1.1.700.009209
ORF7a97Y97YtaCtaT2727B.1.177.820.012888
ORF7a97Y97YtaCtaT2626B.1.2210.001847
ORF7a97Y97YtaCtaT2525AY.250.00015
ORF7a97Y97YtaCtaT2424AY.30.000239
ORF7a97Y97YtaCtaT2424B.1.3510.000713
ORF7a97Y97YtaCtaT2323AY.1020.00061
ORF7a97Y97YtaCtaT2020B.1.5960.001743
ORF7a97Y97YtaCtaT1919AY.480.008837
ORF7a97Y97YtaCtaT1919B.1.1.2310.058824
ORF7a97Y97YtaCtaT1515AE.40.652174
ORF7a97Y97YtaCtaT1515AY.430.000066
ORF7a97Y97YtaCtaT1515B.1.1.2940.018987
ORF7a97Y97YtaCtaT1515B.1.177.600.003277
ORF7a97Y97YtaCtaT1515Q.80.002474
ORF7a97Y97YtaCtaT1212AY.230.000837
ORF7a97Y97YtaCtaT1212B.1.1.3060.005261
ORF7a97Y97YtaCtaT1212C.370.001393
ORF7a97Y97YtaCtaT1111AY.1200.000409
ORF7a97Y97YtaCtaT1111B.400.004007
ORF7a97Y97YtaCtaT1010B.1.2140.03663
ORF7a97Y97YtaCtaT1010B.1.5990.036496
ORF7a97Y97YtaCtaT99B.1.177.40.0019
ORF7a97Y97YtaCtaT99B.1.360.001313
ORF7a97Y97YtaCtaT99B.1.4290.000212
ORF7a97Y97YtaCtaT99Q.40.004093
ORF7a97Y97YtaCtaT88B.1.1.2220.001632
ORF7a97Y97YtaCtaT77AY.3.10.000597
ORF7a97Y97YtaCtaT77AY.5.30.002362
ORF7a97Y97YtaCtaT77B.1.6090.003356
ORF7a97Y97YtaCtaT66AA.60.096774
ORF7a97Y97YtaCtaT66AY.270.000388
ORF7a97Y97YtaCtaT66AY.9.10.000502
ORF7a97Y97YtaCtaT66B.1.1.4320.007595
ORF7a97Y97YtaCtaT66B.1.258.200.095238
ORF7a97Y97YtaCtaT66B.1.5260.000141
ORF7a97Y97YtaCtaT66B.1.6200.005676
ORF7a97Y97YtaCtaT55AY.260.000142
ORF7a97Y97YtaCtaT55AY.660.005348
ORF7a97Y97YtaCtaT55AY.70.00098
ORF7a97Y97YtaCtaT55AY.7.10.000564
ORF7a97Y97YtaCtaT55AY.90.000338
ORF7a97Y97YtaCtaT55B.1.258.170.00052
ORF7a97Y97YtaCtaT55P.1.150.001162
ORF7a97Y97YtaCtaT55P.1.70.001596
ORF7a97Y97YtaCtaT44A.2.50.001996
ORF7a97Y97YtaCtaT44AY.980.000316
ORF7a97Y97YtaCtaT44B.1.1.3290.015385
ORF7a97Y97YtaCtaT44B.1.4230.040816
ORF7a97Y97YtaCtaT44P.1.140.000191
ORF7a97Y97YtaCtaT44P.1.170.000647
ORF7a97Y97YtaCtaT44Q.10.000505
ORF7a97Y97YtaCtaT44R.10.00036
ORF7a97Y97YtaCtaT33A.23.10.002113
ORF7a97Y97YtaCtaT33A.50.005769
ORF7a97Y97YtaCtaT33AY.200.000117
ORF7a97Y97YtaCtaT33AY.450.000365
ORF7a97Y97YtaCtaT33AY.610.000314
ORF7a97Y97YtaCtaT33B.1.1.250.001706
ORF7a97Y97YtaCtaT33B.1.2400.000647
ORF7a97Y97YtaCtaT33B.1.2430.000209
ORF7a97Y97YtaCtaT33B.1.36.290.001552
ORF7a97Y97YtaCtaT33B.1.3690.000856
ORF7a97Y97YtaCtaT33B.1.4040.003906
ORF7a97Y97YtaCtaT33B.1.4410.028846
ORF7a97Y97YtaCtaT33B.1.5250.000339
ORF7a97Y97YtaCtaT33B.1.5380.024194
ORF7a97Y97YtaCtaT33B.1.6190.002613
ORF7a97Y97YtaCtaT33B.1.6210.000266
ORF7a97Y97YtaCtaT33C.360.002732
ORF7a97Y97YtaCtaT22AH.30.007605
ORF7a97Y97YtaCtaT22AY.1000.000092
ORF7a97Y97YtaCtaT22AY.1110.000366
ORF7a97Y97YtaCtaT22AY.290.000032
ORF7a97Y97YtaCtaT22AY.330.000134
ORF7a97Y97YtaCtaT22AY.350.000466
ORF7a97Y97YtaCtaT22AY.39.10.000079
ORF7a97Y97YtaCtaT22AY.39.20.003082
ORF7a97Y97YtaCtaT22AY.460.000208
ORF7a97Y97YtaCtaT22AY.5.10.007519
ORF7a97Y97YtaCtaT22AY.620.000871
ORF7a97Y97YtaCtaT22AY.740.000231
ORF7a97Y97YtaCtaT22AY.750.000112
ORF7a97Y97YtaCtaT22AY.75.10.000361
ORF7a97Y97YtaCtaT22B.1.1.1740.006757
ORF7a97Y97YtaCtaT22B.1.1.2430.008163
ORF7a97Y97YtaCtaT22B.1.1.3720.001377
ORF7a97Y97YtaCtaT22B.1.1080.011628
ORF7a97Y97YtaCtaT22B.1.177.350.001382
ORF7a97Y97YtaCtaT22B.1.2320.001075
ORF7a97Y97YtaCtaT22B.1.2340.000264
ORF7a97Y97YtaCtaT22B.1.2600.006689
ORF7a97Y97YtaCtaT22B.1.351.20.000605
ORF7a97Y97YtaCtaT22B.1.36.80.002
ORF7a97Y97YtaCtaT22B.1.4270.000101
ORF7a97Y97YtaCtaT22B.1.617.10.000258
ORF7a97Y97YtaCtaT22P.1.160.000748
ORF7a97Y97YtaCtaT22Q.30.00029
ORF7a97Y97YtaCtaT22W.40.002703
ORF7a97Y97YtaCtaT11A.10.000282
ORF7a97Y97YtaCtaT11AT.10.005128
ORF7a97Y97YtaCtaT11AY.10.000396
ORF7a97Y97YtaCtaT11AY.1090.00074
ORF7a97Y97YtaCtaT11AY.1170.000085
ORF7a97Y97YtaCtaT11AY.1190.000035
ORF7a97Y97YtaCtaT11AY.120.000316
ORF7a97Y97YtaCtaT11AY.23.10.000417
ORF7a97Y97YtaCtaT11AY.29.10.000221
ORF7a97Y97YtaCtaT11AY.360.000148
ORF7a97Y97YtaCtaT11AY.370.000316
ORF7a97Y97YtaCtaT11AY.380.000499
ORF7a97Y97YtaCtaT11AY.4.20.000022
ORF7a97Y97YtaCtaT11AY.46.20.000635
ORF7a97Y97YtaCtaT11AY.46.30.000934
ORF7a97Y97YtaCtaT11AY.540.000095
ORF7a97Y97YtaCtaT11AY.7.20.000559
ORF7a97Y97YtaCtaT11AY.830.001724
ORF7a97Y97YtaCtaT11AY.9.20.000037
ORF7a97Y97YtaCtaT11AZ.50.003509
ORF7a97Y97YtaCtaT11B.1.1.10.000327
ORF7a97Y97YtaCtaT11B.1.1.1760.000439
ORF7a97Y97YtaCtaT11B.1.1.1890.001513
ORF7a97Y97YtaCtaT11B.1.1.2030.016949
ORF7a97Y97YtaCtaT11B.1.1.2360.006897
ORF7a97Y97YtaCtaT11B.1.1.2630.001558
ORF7a97Y97YtaCtaT11B.1.1.2650.003155
ORF7a97Y97YtaCtaT11B.1.1.280.000311
ORF7a97Y97YtaCtaT11B.1.1.2840.000107
ORF7a97Y97YtaCtaT11B.1.1.2910.000742
ORF7a97Y97YtaCtaT11B.1.1.3040.002809
ORF7a97Y97YtaCtaT11B.1.1.3470.018182
ORF7a97Y97YtaCtaT11B.1.1.3700.012658
ORF7a97Y97YtaCtaT11B.1.1.4160.000905
ORF7a97Y97YtaCtaT11B.1.1.4870.005587
ORF7a97Y97YtaCtaT11B.1.1.5230.001563
ORF7a97Y97YtaCtaT11B.1.1.5260.003546
ORF7a97Y97YtaCtaT11B.1.1.540.003021
ORF7a97Y97YtaCtaT11B.1.1260.001276
ORF7a97Y97YtaCtaT11B.1.160.160.000929
ORF7a97Y97YtaCtaT11B.1.1670.007812
ORF7a97Y97YtaCtaT11B.1.177.100.000878
ORF7a97Y97YtaCtaT11B.1.177.190.001431
ORF7a97Y97YtaCtaT11B.1.177.200.001517
ORF7a97Y97YtaCtaT11B.1.177.630.002703
ORF7a97Y97YtaCtaT11B.1.177.860.000183
ORF7a97Y97YtaCtaT11B.1.2100.002132
ORF7a97Y97YtaCtaT11B.1.2360.002053
ORF7a97Y97YtaCtaT11B.1.243.20.014493
ORF7a97Y97YtaCtaT11B.1.258.20.004505
ORF7a97Y97YtaCtaT11B.1.2790.000514
ORF7a97Y97YtaCtaT11B.1.30.002618
ORF7a97Y97YtaCtaT11B.1.3110.000275
ORF7a97Y97YtaCtaT11B.1.351.30.000876
ORF7a97Y97YtaCtaT11B.1.36.10.00114
ORF7a97Y97YtaCtaT11B.1.36.100.004785
ORF7a97Y97YtaCtaT11B.1.3670.000792
ORF7a97Y97YtaCtaT11B.1.3990.001934
ORF7a97Y97YtaCtaT11B.1.4320.011236
ORF7a97Y97YtaCtaT11B.1.4390.005917
ORF7a97Y97YtaCtaT11B.1.466.20.000391
ORF7a97Y97YtaCtaT11B.1.4970.000315
ORF7a97Y97YtaCtaT11B.1.5450.014493
ORF7a97Y97YtaCtaT11B.1.5750.000303
ORF7a97Y97YtaCtaT11B.1.5760.000907
ORF7a97Y97YtaCtaT11B.1.5950.000261
ORF7a97Y97YtaCtaT11B.1.6230.000536
ORF7a97Y97YtaCtaT11B.1.6270.00202
ORF7a97Y97YtaCtaT11B.280.003279
ORF7a97Y97YtaCtaT11B.430.014286
ORF7a97Y97YtaCtaT11B.570.015152
ORF7a97Y97YtaCtaT11C.160.00106
ORF7a97Y97YtaCtaT11C.37.10.002618
ORF7a97Y97YtaCtaT11D.20.000075
ORF7a97Y97YtaCtaT11M.10.023256
ORF7a97Y97YtaCtaT11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.