CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 95 | E95del | del | GAA | --- | 3165 | 3165 | 1 | 27676-27678 | |
ORF7a | 95 | E95X | nonsyn | Gaa | Taa | 3009 | 3005 | 0.998671 | 27676-27678 | |
ORF7a | 95 | E95X | nonsyn | GAa | TGa | 3009 | 4 | 0.00132935 | 27676-27678 | |
ORF7a | 95 | E95Q | nonsyn | Gaa | Caa | 1018 | 1015 | 0.997053 | 27676-27678 | |
ORF7a | 95 | E95Q | nonsyn | GaA | CaG | 1018 | 3 | 0.00294695 | 27676-27678 | |
ORF7a | 95 | E95K | nonsyn | Gaa | Aaa | 350 | 348 | 0.994286 | 27676-27678 | |
ORF7a | 95 | E95K | nonsyn | GaA | AaG | 350 | 2 | 0.00571429 | 27676-27678 | |
ORF7a | 95 | E95A | nonsyn | gAa | gCa | 254 | 252 | 0.992126 | 27676-27678 | |
ORF7a | 95 | E95A | nonsyn | gAA | gCC | 254 | 2 | 0.00787402 | 27676-27678 | |
ORF7a | 95 | E95E | syn | gaA | gaG | 180 | 180 | 1 | 27676-27678 | |
ORF7a | 95 | E95del2 | del | gAA | g-- | 168 | 166 | 0.988095 | 27676-27678 | |
ORF7a | 95 | E95del2 | del | GAa | --a | 168 | 1 | 0.00595238 | 27676-27678 | |
ORF7a | 95 | E95del2 | del | GAA | --T | 168 | 1 | 0.00595238 | 27676-27678 | |
ORF7a | 95 | E95G | nonsyn | gAa | gGa | 125 | 122 | 0.976 | 27676-27678 | |
ORF7a | 95 | E95G | nonsyn | gAA | gGG | 125 | 1 | 0.008 | 27676-27678 | |
ORF7a | 95 | E95G | nonsyn | gAA | gGT | 125 | 1 | 0.008 | 27676-27678 | |
ORF7a | 95 | E95G | nonsyn | gAA | gGC | 125 | 1 | 0.008 | 27676-27678 | |
ORF7a | 95 | E95del1 | del | Gaa | -aa | 79 | 61 | 0.772152 | 27676-27678 | |
ORF7a | 95 | E95del1 | del | gaA | ga- | 79 | 15 | 0.189873 | 27676-27678 | |
ORF7a | 95 | E95del1 | del | gAa | g-a | 79 | 3 | 0.0379747 | 27676-27678 | |
ORF7a | 95 | E95D | nonsyn | gaA | gaC | 34 | 25 | 0.735294 | 27676-27678 | |
ORF7a | 95 | E95D | nonsyn | gaA | gaT | 34 | 9 | 0.264706 | 27676-27678 | |
ORF7a | 95 | E95V | nonsyn | gAa | gTa | 24 | 24 | 1 | 27676-27678 | |
ORF7a | 95 | E95R | nonsyn | GAa | AGa | 24 | 23 | 0.958333 | 27676-27678 | |
ORF7a | 95 | E95R | nonsyn | GAA | AGG | 24 | 1 | 0.0416667 | 27676-27678 | |
ORF7a | 95 | E95F | nonsyn | GAA | TTT | 15 | 15 | 1 | 27676-27678 | |
ORF7a | 95 | E95Y | nonsyn | GaA | TaC | 4 | 4 | 1 | 27676-27678 | |
ORF7a | 95 | E95T | nonsyn | GAa | ACa | 4 | 3 | 0.75 | 27676-27678 | |
ORF7a | 95 | E95T | nonsyn | GAA | ACG | 4 | 1 | 0.25 | 27676-27678 | |
ORF7a | 95 | E95M | nonsyn | GAA | ATG | 3 | 3 | 1 | 27676-27678 | |
ORF7a | 95 | E95L | nonsyn | GAa | TTa | 2 | 2 | 1 | 27676-27678 | |
ORF7a | 95 | E95S | nonsyn | GAA | AGT | 1 | 1 | 1 | 27676-27678 | |
ORF7a | 95 | E95N | nonsyn | GaA | AaT | 1 | 1 | 1 | 27676-27678 | |
ORF7a | 95 | E95I | nonsyn | GAA | ATT | 1 | 1 | 1 | 27676-27678 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 95 | E95del | GAA | --- | 3165 | 3165 | All | 0.000605 |
ORF7a | 95 | E95X | Gaa | Taa | 3005 | 3009 | All | 0.000575 |
ORF7a | 95 | E95X | GAa | TGa | 4 | 3009 | All | 0.000001 |
ORF7a | 95 | E95del | GAA | --- | 1876 | 1876 | B.1.1.7 | 0.001679 |
ORF7a | 95 | E95Q | Gaa | Caa | 1015 | 1018 | All | 0.000194 |
ORF7a | 95 | E95Q | GaA | CaG | 3 | 1018 | All | 0.000001 |
ORF7a | 95 | E95X | Gaa | Taa | 752 | 752 | B.1.1.7 | 0.000673 |
ORF7a | 95 | E95K | Gaa | Aaa | 348 | 350 | All | 0.000067 |
ORF7a | 95 | E95K | GaA | AaG | 2 | 350 | All | 0 |
ORF7a | 95 | E95X | Gaa | Taa | 281 | 281 | AY.9.2 | 0.010321 |
ORF7a | 95 | E95X | Gaa | Taa | 262 | 262 | B.1.617.2 | 0.000987 |
ORF7a | 95 | E95A | gAa | gCa | 252 | 254 | All | 0.000048 |
ORF7a | 95 | E95A | gAA | gCC | 2 | 254 | All | 0 |
ORF7a | 95 | E95X | Gaa | Taa | 248 | 248 | AY.4 | 0.000386 |
ORF7a | 95 | E95del | GAA | --- | 243 | 243 | AY.4 | 0.000378 |
ORF7a | 95 | E95E | gaA | gaG | 180 | 180 | All | 0.000034 |
ORF7a | 95 | E95del2 | gAA | g-- | 166 | 168 | All | 0.000032 |
ORF7a | 95 | E95del2 | GAa | --a | 1 | 168 | All | 0 |
ORF7a | 95 | E95del2 | GAA | --T | 1 | 168 | All | 0 |
ORF7a | 95 | E95G | gAa | gGa | 122 | 125 | All | 0.000023 |
ORF7a | 95 | E95G | gAA | gGC | 1 | 125 | All | 0 |
ORF7a | 95 | E95G | gAA | gGG | 1 | 125 | All | 0 |
ORF7a | 95 | E95G | gAA | gGT | 1 | 125 | All | 0 |
ORF7a | 95 | E95X | Gaa | Taa | 114 | 114 | AY.103 | 0.000708 |
ORF7a | 95 | E95Q | Gaa | Caa | 113 | 113 | AB.1 | 0.92623 |
ORF7a | 95 | E95X | Gaa | Taa | 113 | 113 | AY.43 | 0.000501 |
ORF7a | 95 | E95Q | Gaa | Caa | 109 | 109 | AY.4 | 0.00017 |
ORF7a | 95 | E95X | Gaa | Taa | 107 | 107 | AY.5 | 0.002209 |
ORF7a | 95 | E95Q | Gaa | Caa | 107 | 107 | B.1.1.7 | 0.000096 |
ORF7a | 95 | E95A | gAa | gCa | 105 | 105 | AY.19 | 0.119726 |
ORF7a | 95 | E95K | Gaa | Aaa | 101 | 101 | B.1.1.7 | 0.00009 |
ORF7a | 95 | E95del2 | gAA | g-- | 91 | 91 | AY.4 | 0.000142 |
ORF7a | 95 | E95Q | Gaa | Caa | 80 | 80 | AY.42 | 0.003218 |
ORF7a | 95 | E95del1 | Gaa | -aa | 61 | 79 | All | 0.000012 |
ORF7a | 95 | E95del1 | gaA | ga- | 15 | 79 | All | 0.000003 |
ORF7a | 95 | E95del1 | gAa | g-a | 3 | 79 | All | 0.000001 |
ORF7a | 95 | E95del | GAA | --- | 76 | 76 | AY.29 | 0.001199 |
ORF7a | 95 | E95A | gAa | gCa | 76 | 76 | B.1.617.2 | 0.000286 |
ORF7a | 95 | E95Q | Gaa | Caa | 73 | 73 | B.1.221 | 0.005185 |
ORF7a | 95 | E95del | GAA | --- | 72 | 72 | AY.103 | 0.000447 |
ORF7a | 95 | E95del | GAA | --- | 67 | 67 | AY.25 | 0.000403 |
ORF7a | 95 | E95X | Gaa | Taa | 65 | 65 | AY.44 | 0.000396 |
ORF7a | 95 | E95E | gaA | gaG | 65 | 65 | B.1.1.7 | 0.000058 |
ORF7a | 95 | E95Q | Gaa | Caa | 60 | 60 | B.1.609 | 0.028763 |
ORF7a | 95 | E95X | Gaa | Taa | 59 | 59 | AY.102 | 0.001564 |
ORF7a | 95 | E95X | Gaa | Taa | 56 | 56 | AY.13 | 0.009015 |
ORF7a | 95 | E95X | Gaa | Taa | 56 | 56 | AY.23.1 | 0.023372 |
ORF7a | 95 | E95del | GAA | --- | 54 | 54 | B.1.2 | 0.000475 |
ORF7a | 95 | E95E | gaA | gaG | 50 | 50 | B.1.637 | 0.003654 |
ORF7a | 95 | E95X | Gaa | Taa | 48 | 48 | AY.100 | 0.002208 |
ORF7a | 95 | E95Q | Gaa | Caa | 45 | 45 | B.1.36 | 0.006566 |
ORF7a | 95 | E95del | GAA | --- | 43 | 43 | B.1.617.2 | 0.000162 |
ORF7a | 95 | E95del | GAA | --- | 42 | 42 | AY.3 | 0.000418 |
ORF7a | 95 | E95del | GAA | --- | 42 | 42 | AY.43 | 0.000186 |
ORF7a | 95 | E95G | gAa | gGa | 42 | 42 | B.1.1.7 | 0.000038 |
ORF7a | 95 | E95X | Gaa | Taa | 41 | 41 | AY.39 | 0.001013 |
ORF7a | 95 | E95X | Gaa | Taa | 41 | 41 | AY.5.4 | 0.011345 |
ORF7a | 95 | E95del2 | gAA | g-- | 40 | 41 | B.1.1.7 | 0.000036 |
ORF7a | 95 | E95del2 | GAa | --a | 1 | 41 | B.1.1.7 | 0.000001 |
ORF7a | 95 | E95Q | Gaa | Caa | 40 | 40 | B.1.429 | 0.000941 |
ORF7a | 95 | E95del | GAA | --- | 39 | 39 | AY.39 | 0.000964 |
ORF7a | 95 | E95del | GAA | --- | 37 | 37 | B.1.1.284 | 0.003974 |
ORF7a | 95 | E95X | Gaa | Taa | 36 | 36 | AY.25 | 0.000217 |
ORF7a | 95 | E95K | Gaa | Aaa | 35 | 35 | B.1.1.306 | 0.015344 |
ORF7a | 95 | E95D | gaA | gaC | 25 | 34 | All | 0.000005 |
ORF7a | 95 | E95D | gaA | gaT | 9 | 34 | All | 0.000002 |
ORF7a | 95 | E95E | gaA | gaG | 33 | 33 | AY.103 | 0.000205 |
ORF7a | 95 | E95del1 | Gaa | -aa | 31 | 33 | AY.4 | 0.000048 |
ORF7a | 95 | E95del1 | gaA | ga- | 2 | 33 | AY.4 | 0.000003 |
ORF7a | 95 | E95del | GAA | --- | 33 | 33 | B.1 | 0.000302 |
ORF7a | 95 | E95del | GAA | --- | 33 | 33 | B.1.1.214 | 0.00183 |
ORF7a | 95 | E95del | GAA | --- | 33 | 33 | B.1.621 | 0.002921 |
ORF7a | 95 | E95Q | Gaa | Caa | 31 | 31 | AY.3 | 0.000308 |
ORF7a | 95 | E95X | Gaa | Taa | 31 | 31 | B.1.177 | 0.000408 |
ORF7a | 95 | E95K | Gaa | Aaa | 28 | 28 | AY.4.2.1 | 0.004172 |
ORF7a | 95 | E95X | Gaa | Taa | 28 | 28 | AY.72 | 0.038095 |
ORF7a | 95 | E95X | Gaa | Taa | 26 | 27 | AY.3 | 0.000259 |
ORF7a | 95 | E95X | GAa | TGa | 1 | 27 | AY.3 | 0.00001 |
ORF7a | 95 | E95Q | Gaa | Caa | 26 | 26 | B.1.2 | 0.000229 |
ORF7a | 95 | E95Q | Gaa | Caa | 25 | 25 | AY.103 | 0.000155 |
ORF7a | 95 | E95X | Gaa | Taa | 25 | 25 | AY.119 | 0.000883 |
ORF7a | 95 | E95Q | Gaa | Caa | 25 | 25 | AY.43 | 0.000111 |
ORF7a | 95 | E95X | Gaa | Taa | 22 | 25 | P.1 | 0.000347 |
ORF7a | 95 | E95X | GAa | TGa | 3 | 25 | P.1 | 0.000047 |
ORF7a | 95 | E95V | gAa | gTa | 24 | 24 | All | 0.000005 |
ORF7a | 95 | E95R | GAa | AGa | 23 | 24 | All | 0.000004 |
ORF7a | 95 | E95R | GAA | AGG | 1 | 24 | All | 0 |
ORF7a | 95 | E95Q | Gaa | Caa | 24 | 24 | B.1 | 0.00022 |
ORF7a | 95 | E95del | GAA | --- | 23 | 23 | AY.44 | 0.00014 |
ORF7a | 95 | E95K | Gaa | Aaa | 23 | 23 | B.1.160 | 0.000717 |
ORF7a | 95 | E95del | GAA | --- | 23 | 23 | P.1 | 0.000362 |
ORF7a | 95 | E95X | Gaa | Taa | 22 | 22 | AY.120 | 0.000818 |
ORF7a | 95 | E95del | GAA | --- | 21 | 21 | AY.3.1 | 0.00179 |
ORF7a | 95 | E95X | Gaa | Taa | 20 | 20 | AY.6 | 0.000823 |
ORF7a | 95 | E95del | GAA | --- | 20 | 20 | AY.7.2 | 0.011186 |
ORF7a | 95 | E95R | GAa | AGa | 20 | 20 | B.1.1 | 0.000363 |
ORF7a | 95 | E95del | GAA | --- | 20 | 20 | B.1.351 | 0.000595 |
ORF7a | 95 | E95X | Gaa | Taa | 19 | 19 | AY.26 | 0.000538 |
ORF7a | 95 | E95X | Gaa | Taa | 19 | 19 | AY.75 | 0.001064 |
ORF7a | 95 | E95X | Gaa | Taa | 18 | 18 | AY.46 | 0.001873 |
ORF7a | 95 | E95X | Gaa | Taa | 18 | 18 | B.1.177.61 | 0.782609 |
ORF7a | 95 | E95Q | Gaa | Caa | 18 | 18 | P.1 | 0.000284 |
ORF7a | 95 | E95K | Gaa | Aaa | 17 | 17 | B.1.617.2 | 0.000064 |
ORF7a | 95 | E95K | Gaa | Aaa | 16 | 16 | B.1.1 | 0.00029 |
ORF7a | 95 | E95del | GAA | --- | 16 | 16 | B.1.1.222 | 0.003264 |
ORF7a | 95 | E95X | Gaa | Taa | 16 | 16 | B.1.1.291 | 0.011878 |
ORF7a | 95 | E95del | GAA | --- | 16 | 16 | B.1.1.519 | 0.000635 |
ORF7a | 95 | E95del1 | Gaa | -aa | 11 | 16 | B.1.1.7 | 0.00001 |
ORF7a | 95 | E95del1 | gaA | ga- | 5 | 16 | B.1.1.7 | 0.000004 |
ORF7a | 95 | E95F | GAA | TTT | 15 | 15 | All | 0.000003 |
ORF7a | 95 | E95del | GAA | --- | 15 | 15 | AY.26 | 0.000425 |
ORF7a | 95 | E95del | GAA | --- | 15 | 15 | B.1.177 | 0.000198 |
ORF7a | 95 | E95X | Gaa | Taa | 15 | 15 | B.1.2 | 0.000132 |
ORF7a | 95 | E95X | Gaa | Taa | 15 | 15 | B.1.526 | 0.000353 |
ORF7a | 95 | E95X | Gaa | Taa | 14 | 14 | AY.121 | 0.001894 |
ORF7a | 95 | E95G | gAa | gGa | 14 | 14 | AY.44 | 0.000085 |
ORF7a | 95 | E95X | Gaa | Taa | 14 | 14 | AY.46.4 | 0.002303 |
ORF7a | 95 | E95X | Gaa | Taa | 14 | 14 | AY.73 | 0.009315 |
ORF7a | 95 | E95X | Gaa | Taa | 14 | 14 | B.1.160 | 0.000437 |
ORF7a | 95 | E95A | gAa | gCa | 13 | 13 | AY.70 | 0.002711 |
ORF7a | 95 | E95X | Gaa | Taa | 13 | 13 | B.1.1 | 0.000236 |
ORF7a | 95 | E95del | GAA | --- | 13 | 13 | B.1.234 | 0.001715 |
ORF7a | 95 | E95Q | Gaa | Caa | 13 | 13 | B.1.36.18 | 0.005462 |
ORF7a | 95 | E95Q | Gaa | Caa | 13 | 13 | B.1.617.2 | 0.000049 |
ORF7a | 95 | E95del | GAA | --- | 12 | 12 | AY.100 | 0.000552 |
ORF7a | 95 | E95X | Gaa | Taa | 12 | 12 | AY.23 | 0.000837 |
ORF7a | 95 | E95X | Gaa | Taa | 12 | 12 | B.1 | 0.00011 |
ORF7a | 95 | E95del | GAA | --- | 12 | 12 | B.1.1 | 0.000218 |
ORF7a | 95 | E95Q | Gaa | Caa | 10 | 12 | B.1.1 | 0.000181 |
ORF7a | 95 | E95Q | GaA | CaG | 2 | 12 | B.1.1 | 0.000036 |
ORF7a | 95 | E95X | Gaa | Taa | 12 | 12 | B.1.189 | 0.051502 |
ORF7a | 95 | E95Q | Gaa | Caa | 12 | 12 | B.1.466.2 | 0.004695 |
ORF7a | 95 | E95K | Gaa | Aaa | 11 | 11 | A.23.1 | 0.007746 |
ORF7a | 95 | E95del | GAA | --- | 11 | 11 | AY.121 | 0.001488 |
ORF7a | 95 | E95K | Gaa | Aaa | 11 | 11 | AY.25 | 0.000066 |
ORF7a | 95 | E95X | Gaa | Taa | 11 | 11 | AY.45 | 0.001339 |
ORF7a | 95 | E95del | GAA | --- | 11 | 11 | B.1.637 | 0.000804 |
ORF7a | 95 | E95G | gAa | gGa | 10 | 10 | AY.43 | 0.000044 |
ORF7a | 95 | E95X | Gaa | Taa | 10 | 10 | AY.98.1 | 0.000484 |
ORF7a | 95 | E95K | Gaa | Aaa | 10 | 10 | P.1 | 0.000158 |
ORF7a | 95 | E95del2 | gAA | g-- | 9 | 9 | AY.103 | 0.000056 |
ORF7a | 95 | E95G | gAa | gGa | 9 | 9 | AY.26 | 0.000255 |
ORF7a | 95 | E95K | Gaa | Aaa | 9 | 9 | B.1 | 0.000082 |
ORF7a | 95 | E95D | gaA | gaC | 9 | 9 | B.1.1.7 | 0.000008 |
ORF7a | 95 | E95Q | Gaa | Caa | 9 | 9 | B.1.177 | 0.000119 |
ORF7a | 95 | E95X | Gaa | Taa | 9 | 9 | B.1.177.81 | 0.001704 |
ORF7a | 95 | E95X | Gaa | Taa | 9 | 9 | B.1.319 | 0.027439 |
ORF7a | 95 | E95del | GAA | --- | 9 | 9 | B.1.526 | 0.000212 |
ORF7a | 95 | E95Q | Gaa | Caa | 9 | 9 | B.1.621.1 | 0.004552 |
ORF7a | 95 | E95Q | Gaa | Caa | 9 | 9 | C.37 | 0.001045 |
ORF7a | 95 | E95del | GAA | --- | 9 | 9 | R.1 | 0.00081 |
ORF7a | 95 | E95X | Gaa | Taa | 8 | 8 | AY.116 | 0.002294 |
ORF7a | 95 | E95K | Gaa | Aaa | 8 | 8 | AY.46.4 | 0.001316 |
ORF7a | 95 | E95del | GAA | --- | 8 | 8 | B.1.160 | 0.00025 |
ORF7a | 95 | E95Q | Gaa | Caa | 8 | 8 | B.1.160 | 0.00025 |
ORF7a | 95 | E95K | Gaa | Aaa | 8 | 8 | B.1.177 | 0.000105 |
ORF7a | 95 | E95del2 | gAA | g-- | 8 | 8 | B.1.234 | 0.001056 |
ORF7a | 95 | E95X | Gaa | Taa | 8 | 8 | C.37 | 0.000929 |
ORF7a | 95 | E95V | gAa | gTa | 7 | 7 | B.1.1.7 | 0.000006 |
ORF7a | 95 | E95Q | Gaa | Caa | 7 | 7 | B.1.232 | 0.003761 |
ORF7a | 95 | E95X | Gaa | Taa | 7 | 7 | B.1.240 | 0.001509 |
ORF7a | 95 | E95Q | Gaa | Caa | 7 | 7 | B.1.243 | 0.000487 |
ORF7a | 95 | E95K | Gaa | Aaa | 7 | 7 | B.1.427 | 0.000353 |
ORF7a | 95 | E95del | GAA | --- | 7 | 7 | B.1.525 | 0.000792 |
ORF7a | 95 | E95K | Gaa | Aaa | 7 | 7 | B.1.637 | 0.000512 |
ORF7a | 95 | E95del | GAA | --- | 7 | 7 | C.37 | 0.000812 |
ORF7a | 95 | E95del | GAA | --- | 6 | 6 | AY.120 | 0.000223 |
ORF7a | 95 | E95X | Gaa | Taa | 6 | 6 | AY.20 | 0.000233 |
ORF7a | 95 | E95del | GAA | --- | 6 | 6 | AY.42 | 0.000241 |
ORF7a | 95 | E95X | Gaa | Taa | 6 | 6 | AY.61 | 0.000629 |
ORF7a | 95 | E95E | gaA | gaG | 6 | 6 | B.1.1.519 | 0.000238 |
ORF7a | 95 | E95X | Gaa | Taa | 6 | 6 | B.1.177.83 | 0.008889 |
ORF7a | 95 | E95Q | Gaa | Caa | 6 | 6 | B.1.351 | 0.000178 |
ORF7a | 95 | E95X | Gaa | Taa | 6 | 6 | B.1.628 | 0.002114 |
ORF7a | 95 | E95X | Gaa | Taa | 6 | 6 | P.1.14 | 0.000287 |
ORF7a | 95 | E95K | Gaa | Aaa | 6 | 6 | P.1.14 | 0.000287 |
ORF7a | 95 | E95X | Gaa | Taa | 6 | 6 | P.1.7 | 0.001916 |
ORF7a | 95 | E95Q | Gaa | Caa | 6 | 6 | Q.1 | 0.000758 |
ORF7a | 95 | E95del1 | Gaa | -aa | 5 | 5 | AY.100 | 0.00023 |
ORF7a | 95 | E95X | Gaa | Taa | 5 | 5 | AY.117 | 0.000423 |
ORF7a | 95 | E95Q | Gaa | Caa | 5 | 5 | AY.118 | 0.000313 |
ORF7a | 95 | E95X | Gaa | Taa | 5 | 5 | AY.12 | 0.00158 |
ORF7a | 95 | E95del | GAA | --- | 5 | 5 | AY.23 | 0.000349 |
ORF7a | 95 | E95del1 | Gaa | -aa | 5 | 5 | AY.25 | 0.00003 |
ORF7a | 95 | E95G | gAa | gGa | 5 | 5 | AY.4 | 0.000008 |
ORF7a | 95 | E95A | gAa | gCa | 5 | 5 | AY.4 | 0.000008 |
ORF7a | 95 | E95X | Gaa | Taa | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF7a | 95 | E95Q | Gaa | Caa | 5 | 5 | AY.44 | 0.00003 |
ORF7a | 95 | E95G | gAa | gGa | 5 | 5 | AY.59 | 0.002648 |
ORF7a | 95 | E95del | GAA | --- | 5 | 5 | AY.98.1 | 0.000242 |
ORF7a | 95 | E95X | Gaa | Taa | 5 | 5 | B.1.427 | 0.000252 |
ORF7a | 95 | E95X | Gaa | Taa | 5 | 5 | B.1.617.1 | 0.000645 |
ORF7a | 95 | E95X | Gaa | Taa | 5 | 5 | D.2 | 0.000375 |
ORF7a | 95 | E95del1 | gaA | ga- | 5 | 5 | P.1 | 0.000079 |
ORF7a | 95 | E95E | gaA | gaG | 5 | 5 | P.1 | 0.000079 |
ORF7a | 95 | E95del | GAA | --- | 5 | 5 | P.1.15 | 0.001162 |
ORF7a | 95 | E95del | GAA | --- | 5 | 5 | Q.8 | 0.000825 |
ORF7a | 95 | E95Y | GaA | TaC | 4 | 4 | All | 0.000001 |
ORF7a | 95 | E95T | GAa | ACa | 3 | 4 | All | 0.000001 |
ORF7a | 95 | E95T | GAA | ACG | 1 | 4 | All | 0 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.111 | 0.000733 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.113 | 0.00057 |
ORF7a | 95 | E95del | GAA | --- | 4 | 4 | AY.118 | 0.000251 |
ORF7a | 95 | E95Q | Gaa | Caa | 4 | 4 | AY.119 | 0.000141 |
ORF7a | 95 | E95Q | Gaa | Caa | 4 | 4 | AY.29 | 0.000063 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.29 | 0.000063 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.33 | 0.000267 |
ORF7a | 95 | E95Q | Gaa | Caa | 4 | 4 | AY.37 | 0.001264 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.39.1 | 0.000158 |
ORF7a | 95 | E95Q | Gaa | Caa | 4 | 4 | AY.39.1 | 0.000158 |
ORF7a | 95 | E95K | Gaa | Aaa | 4 | 4 | AY.4 | 0.000006 |
ORF7a | 95 | E95V | gAa | gTa | 4 | 4 | AY.4 | 0.000006 |
ORF7a | 95 | E95del | GAA | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.42 | 0.000161 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.47 | 0.000124 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.5.3 | 0.00135 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.55 | 0.00367 |
ORF7a | 95 | E95K | Gaa | Aaa | 4 | 4 | AY.57 | 0.002625 |
ORF7a | 95 | E95Q | Gaa | Caa | 4 | 4 | AY.61 | 0.000419 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.7 | 0.000784 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.75.1 | 0.000721 |
ORF7a | 95 | E95del | GAA | --- | 4 | 4 | AY.79 | 0.004843 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | AY.98 | 0.000316 |
ORF7a | 95 | E95E | gaA | gaG | 4 | 4 | B.1.1 | 0.000073 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | B.1.1.318 | 0.001207 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | B.1.1.519 | 0.000159 |
ORF7a | 95 | E95Q | Gaa | Caa | 4 | 4 | B.1.1.519 | 0.000159 |
ORF7a | 95 | E95Y | GaA | TaC | 4 | 4 | B.1.1.7 | 0.000004 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | B.1.177.86 | 0.000734 |
ORF7a | 95 | E95K | Gaa | Aaa | 4 | 4 | B.1.2 | 0.000035 |
ORF7a | 95 | E95del2 | gAA | g-- | 4 | 4 | B.1.2 | 0.000035 |
ORF7a | 95 | E95G | gAa | gGa | 4 | 4 | B.1.2 | 0.000035 |
ORF7a | 95 | E95del | GAA | --- | 4 | 4 | B.1.258 | 0.000266 |
ORF7a | 95 | E95A | gAa | gCa | 4 | 4 | B.1.311 | 0.001098 |
ORF7a | 95 | E95X | Gaa | Taa | 4 | 4 | B.1.351 | 0.000119 |
ORF7a | 95 | E95G | gAa | gGa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF7a | 95 | E95A | gAa | gCa | 4 | 4 | Q.1 | 0.000505 |
ORF7a | 95 | E95del | GAA | --- | 4 | 4 | Q.1 | 0.000505 |
ORF7a | 95 | E95M | GAA | ATG | 3 | 3 | All | 0.000001 |
ORF7a | 95 | E95A | gAa | gCa | 3 | 3 | AY.10 | 0.00159 |
ORF7a | 95 | E95Q | Gaa | Caa | 3 | 3 | AY.110 | 0.000338 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | AY.118 | 0.000188 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | AY.119 | 0.000106 |
ORF7a | 95 | E95G | gAa | gGa | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | AY.20 | 0.000117 |
ORF7a | 95 | E95G | gAa | gGa | 3 | 3 | AY.25 | 0.000018 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | AY.27 | 0.000194 |
ORF7a | 95 | E95E | gaA | gaG | 3 | 3 | AY.4 | 0.000005 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF7a | 95 | E95K | Gaa | Aaa | 3 | 3 | AY.43 | 0.000013 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | AY.46.4 | 0.000494 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | AY.47 | 0.000093 |
ORF7a | 95 | E95Q | Gaa | Caa | 3 | 3 | AY.51 | 0.002727 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | AY.54 | 0.000286 |
ORF7a | 95 | E95A | gAa | gCa | 3 | 3 | AY.61 | 0.000314 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | AY.7.2 | 0.001678 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | AY.84 | 0.001312 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | AY.9.1 | 0.000251 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | AY.9.1 | 0.000251 |
ORF7a | 95 | E95del1 | Gaa | -aa | 3 | 3 | B.1 | 0.000027 |
ORF7a | 95 | E95F | GAA | TTT | 3 | 3 | B.1.1 | 0.000054 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | B.1.1.269 | 0.00406 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | B.1.160.28 | 0.008772 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7a | 95 | E95K | Gaa | Aaa | 3 | 3 | B.1.177.4 | 0.000633 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | B.1.177.86 | 0.00055 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | B.1.36 | 0.000438 |
ORF7a | 95 | E95F | GAA | TTT | 3 | 3 | B.1.36.1 | 0.003421 |
ORF7a | 95 | E95Q | Gaa | Caa | 3 | 3 | B.1.36.17 | 0.001482 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | B.1.36.8 | 0.003 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | B.1.427 | 0.000151 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF7a | 95 | E95G | gAa | gGa | 3 | 3 | B.1.509 | 0.002597 |
ORF7a | 95 | E95K | Gaa | Aaa | 3 | 3 | B.1.538 | 0.024194 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF7a | 95 | E95Q | Gaa | Caa | 3 | 3 | B.1.587 | 0.005693 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | B.1.621 | 0.000266 |
ORF7a | 95 | E95del | GAA | --- | 3 | 3 | B.1.626 | 0.017143 |
ORF7a | 95 | E95del2 | gAA | g-- | 3 | 3 | Q.3 | 0.000435 |
ORF7a | 95 | E95X | Gaa | Taa | 3 | 3 | Q.7 | 0.003333 |
ORF7a | 95 | E95Q | Gaa | Caa | 3 | 3 | R.1 | 0.00027 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | 0.111111 | |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | A | 0.000774 |
ORF7a | 95 | E95E | gaA | gaG | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 95 | E95del2 | gAA | g-- | 2 | 2 | A.2.5 | 0.000998 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | A.21 | 0.00554 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | A.28 | 0.005291 |
ORF7a | 95 | E95V | gAa | gTa | 2 | 2 | AE.5 | 0.037037 |
ORF7a | 95 | E95L | GAa | TTa | 2 | 2 | All | 0 |
ORF7a | 95 | E95K | Gaa | Aaa | 2 | 2 | AY.103 | 0.000012 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.106 | 0.00067 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.108 | 0.002205 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.109 | 0.001479 |
ORF7a | 95 | E95A | gAa | gCa | 2 | 2 | AY.11 | 0.002677 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.110 | 0.000225 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.114 | 0.000462 |
ORF7a | 95 | E95D | gaA | gaC | 2 | 2 | AY.116.1 | 0.000623 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.116.1 | 0.000623 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.12 | 0.000632 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | AY.121 | 0.000271 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | AY.20 | 0.000078 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.24 | 0.000862 |
ORF7a | 95 | E95V | gAa | gTa | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 95 | E95A | gAa | gCa | 2 | 2 | AY.25 | 0.000012 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.30 | 0.000791 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.34 | 0.000194 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.34 | 0.000194 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.36 | 0.000296 |
ORF7a | 95 | E95D | gaA | gaC | 2 | 2 | AY.4 | 0.000003 |
ORF7a | 95 | E95K | Gaa | Aaa | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | AY.4.2 | 0.000043 |
ORF7a | 95 | E95E | gaA | gaG | 2 | 2 | AY.43 | 0.000009 |
ORF7a | 95 | E95K | Gaa | Aaa | 2 | 2 | AY.44 | 0.000012 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.45 | 0.000243 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.46.2 | 0.001271 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.46.6 | 0.000144 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | AY.47 | 0.000062 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.5 | 0.000041 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.7.1 | 0.000225 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.71 | 0.00095 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.74 | 0.000231 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.79 | 0.002421 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 2 | AY.85 | 0.000427 |
ORF7a | 95 | E95G | gAA | gGG | 1 | 2 | AY.85 | 0.000427 |
ORF7a | 95 | E95A | gAA | gCC | 1 | 2 | AY.85 | 0.000427 |
ORF7a | 95 | E95G | gAA | gGT | 1 | 2 | AY.85 | 0.000427 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | AY.87 | 0.001665 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | AY.98.1 | 0.000097 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | AY.99 | 0.002099 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B | 0.000256 |
ORF7a | 95 | E95A | gAa | gCa | 2 | 2 | B.1 | 0.000018 |
ORF7a | 95 | E95E | gaA | gaG | 2 | 2 | B.1 | 0.000018 |
ORF7a | 95 | E95del2 | gAA | g-- | 2 | 2 | B.1.1 | 0.000036 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.1.121 | 0.004854 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | B.1.1.192 | 0.004619 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | B.1.1.200 | 0.014925 |
ORF7a | 95 | E95G | gAa | gGa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 95 | E95A | gAa | gCa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.1.220 | 0.003717 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | B.1.1.316 | 0.00185 |
ORF7a | 95 | E95A | gAa | gCa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF7a | 95 | E95del1 | Gaa | -aa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7a | 95 | E95A | gAa | gCa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.177.15 | 0.001262 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | B.1.177.16 | 0.001329 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.177.20 | 0.003035 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.214.2 | 0.001199 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.232 | 0.001075 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.258.11 | 0.000793 |
ORF7a | 95 | E95A | gAa | gCa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | B.1.324 | 0.00321 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.350 | 0.005865 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | B.1.350 | 0.005865 |
ORF7a | 95 | E95F | GAA | TTT | 2 | 2 | B.1.351 | 0.000059 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7a | 95 | E95del | GAA | --- | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.396 | 0.001411 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.425 | 0.005988 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.427 | 0.000101 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.435 | 0.022727 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.456 | 0.006536 |
ORF7a | 95 | E95R | GAa | AGa | 2 | 2 | B.1.525 | 0.000226 |
ORF7a | 95 | E95V | gAa | gTa | 2 | 2 | B.1.526 | 0.000047 |
ORF7a | 95 | E95A | gAa | gCa | 2 | 2 | B.1.526 | 0.000047 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | B.1.596 | 0.000174 |
ORF7a | 95 | E95del2 | gAA | g-- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 95 | E95E | gaA | gaG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF7a | 95 | E95del1 | gAa | g-a | 2 | 2 | B.1.627 | 0.00404 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | B.1.8 | 0.003945 |
ORF7a | 95 | E95K | Gaa | Aaa | 2 | 2 | D.2 | 0.00015 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | P.1.14 | 0.000096 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | P.2 | 0.000373 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | Q.1 | 0.000253 |
ORF7a | 95 | E95X | Gaa | Taa | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 95 | E95Q | Gaa | Caa | 2 | 2 | Q.8 | 0.00033 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | 0.055556 | |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | A | 0.000387 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | A | 0.000387 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | A.1 | 0.000282 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | A.2 | 0.000662 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | A.2.4 | 0.003367 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | A.2.5 | 0.000499 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | AD.2 | 0.000219 |
ORF7a | 95 | E95N | GaA | AaT | 1 | 1 | All | 0 |
ORF7a | 95 | E95S | GAA | AGT | 1 | 1 | All | 0 |
ORF7a | 95 | E95I | GAA | ATT | 1 | 1 | All | 0 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | AU.1 | 0.001266 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.100 | 0.000046 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.101 | 0.00049 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.102 | 0.000027 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.103 | 0.000006 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.105 | 0.000643 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.106 | 0.000335 |
ORF7a | 95 | E95del1 | Gaa | -aa | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.110 | 0.000113 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.111 | 0.000183 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.116 | 0.000287 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.120 | 0.000037 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 95 | E95del2 | gAA | g-- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.14 | 0.000088 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | AY.20 | 0.000039 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.23 | 0.00007 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 95 | E95E | gaA | gaG | 1 | 1 | AY.25 | 0.000006 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.26 | 0.000028 |
ORF7a | 95 | E95del2 | GAA | --T | 1 | 1 | AY.29 | 0.000016 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.3 | 0.00001 |
ORF7a | 95 | E95T | GAa | ACa | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.3.1 | 0.000085 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 95 | E95Q | GaA | CaG | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 95 | E95M | GAA | ATG | 1 | 1 | AY.30 | 0.000396 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 95 | E95A | gAA | gCC | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.34 | 0.000097 |
ORF7a | 95 | E95del2 | gAA | g-- | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.37 | 0.000316 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | AY.39 | 0.000025 |
ORF7a | 95 | E95M | GAA | ATG | 1 | 1 | AY.4 | 0.000002 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.4.2 | 0.000022 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.4.4 | 0.000409 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.40 | 0.000964 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.41 | 0.000294 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.42 | 0.00004 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 95 | E95del1 | Gaa | -aa | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 95 | E95V | gAa | gTa | 1 | 1 | AY.43 | 0.000004 |
ORF7a | 95 | E95del2 | gAA | g-- | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 95 | E95del1 | Gaa | -aa | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 95 | E95E | gaA | gaG | 1 | 1 | AY.44 | 0.000006 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.45 | 0.000122 |
ORF7a | 95 | E95V | gAa | gTa | 1 | 1 | AY.46 | 0.000104 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.46.3 | 0.000934 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | AY.46.6 | 0.000072 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.54 | 0.000095 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.56 | 0.001605 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.57 | 0.000656 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.59 | 0.00053 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.61 | 0.000105 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.65 | 0.000533 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 95 | E95E | gaA | gaG | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.69 | 0.000187 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.7.1 | 0.000113 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.71 | 0.000475 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.72 | 0.001361 |
ORF7a | 95 | E95del2 | gAA | g-- | 1 | 1 | AY.72 | 0.001361 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.75.1 | 0.00018 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.8 | 0.000606 |
ORF7a | 95 | E95R | GAa | AGa | 1 | 1 | AY.82 | 0.001357 |
ORF7a | 95 | E95K | GaA | AaG | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 95 | E95E | gaA | gaG | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 95 | E95S | GAA | AGT | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 95 | E95R | GAA | AGG | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 95 | E95N | GaA | AaT | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.88 | 0.000884 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.89 | 0.004902 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.9 | 0.000068 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.9.2 | 0.000037 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.91 | 0.00073 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.92 | 0.000287 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AY.99 | 0.001049 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | AZ.4 | 0.003356 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B | 0.000128 |
ORF7a | 95 | E95G | gAA | gGC | 1 | 1 | B.1 | 0.000009 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | B.1 | 0.000009 |
ORF7a | 95 | E95F | GAA | TTT | 1 | 1 | B.1 | 0.000009 |
ORF7a | 95 | E95V | gAa | gTa | 1 | 1 | B.1 | 0.000009 |
ORF7a | 95 | E95del1 | gaA | ga- | 1 | 1 | B.1.1 | 0.000018 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF7a | 95 | E95F | GAA | TTT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.1.230 | 0.009174 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.1.244 | 0.015385 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.258 | 0.003257 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.1.26 | 0.005236 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.1.272 | 0.005208 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF7a | 95 | E95F | GAA | TTT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.1.303 | 0.002762 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF7a | 95 | E95V | gAa | gTa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | B.1.1.369 | 0.000446 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.1.406 | 0.006494 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.411 | 0.014706 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.442 | 0.018519 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF7a | 95 | E95M | GAA | ATG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 95 | E95T | GAa | ACa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 95 | E95L | GAa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | B.1.111 | 0.001175 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.128 | 0.000635 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | B.1.160.15 | 0.00495 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.160.29 | 0.004219 |
ORF7a | 95 | E95F | GAA | TTT | 1 | 1 | B.1.177 | 0.000013 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.177.25 | 0.014925 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.177.42 | 0.000894 |
ORF7a | 95 | E95E | gaA | gaG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF7a | 95 | E95T | GAA | ACG | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 95 | E95del1 | Gaa | -aa | 1 | 1 | B.1.2 | 0.000009 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.210 | 0.002132 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | B.1.221 | 0.000071 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF7a | 95 | E95F | GAA | TTT | 1 | 1 | B.1.242 | 0.018868 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | B.1.243 | 0.00007 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.258 | 0.000067 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.258.9 | 0.005 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.289 | 0.00266 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.311 | 0.000275 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | B.1.314 | 0.007519 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.338 | 0.008621 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.340 | 0.004292 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 95 | E95A | gAa | gCa | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 95 | E95del1 | gaA | ga- | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF7a | 95 | E95F | GAA | TTT | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.36 | 0.000146 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF7a | 95 | E95V | gAa | gTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.36.8 | 0.001 |
ORF7a | 95 | E95V | gAa | gTa | 1 | 1 | B.1.361 | 0.001289 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.406 | 0.006061 |
ORF7a | 95 | E95K | GaA | AaG | 1 | 1 | B.1.416 | 0.001269 |
ORF7a | 95 | E95E | gaA | gaG | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | B.1.429 | 0.000024 |
ORF7a | 95 | E95F | GAA | TTT | 1 | 1 | B.1.438 | 0.006536 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.459 | 0.004082 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.467 | 0.04 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.470 | 0.001404 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.471 | 0.002732 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | B.1.497 | 0.000315 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.525 | 0.000113 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.526 | 0.000024 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.527 | 0.003704 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.551 | 0.00129 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.556 | 0.007519 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.561 | 0.000397 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.564.1 | 0.001577 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.582 | 0.000491 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.595 | 0.000261 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 95 | E95del1 | gAa | g-a | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.609 | 0.000479 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.610 | 0.003546 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF7a | 95 | E95del1 | gaA | ga- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 95 | E95L | GAa | TTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | B.1.619 | 0.000871 |
ORF7a | 95 | E95I | GAA | ATT | 1 | 1 | B.1.621 | 0.000089 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 95 | E95del2 | gAA | g-- | 1 | 1 | B.1.625 | 0.002353 |
ORF7a | 95 | E95T | GAa | ACa | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.1.637 | 0.000073 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.9.1 | 0.032258 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | B.1.9.5 | 0.005682 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | B.1.94 | 0.027027 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | B.40 | 0.000364 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | C.36 | 0.000911 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | C.37 | 0.000116 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | C.37 | 0.000116 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | D.2 | 0.000075 |
ORF7a | 95 | E95D | gaA | gaT | 1 | 1 | P.1 | 0.000016 |
ORF7a | 95 | E95G | gAa | gGa | 1 | 1 | P.1 | 0.000016 |
ORF7a | 95 | E95V | gAa | gTa | 1 | 1 | P.1 | 0.000016 |
ORF7a | 95 | E95K | Gaa | Aaa | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | P.1.16 | 0.000374 |
ORF7a | 95 | E95Q | Gaa | Caa | 1 | 1 | P.1.17 | 0.000162 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | P.1.17.1 | 0.000875 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | P.1.3 | 0.034483 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | P.1.6 | 0.001946 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | P.2 | 0.000187 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | Q.3 | 0.000145 |
ORF7a | 95 | E95X | Gaa | Taa | 1 | 1 | Q.4 | 0.000455 |
ORF7a | 95 | E95del | GAA | --- | 1 | 1 | Q.7 | 0.001111 |
ORF7a | 95 | E95D | gaA | gaC | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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