CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 95

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a95E95deldelGAA---31653165127676-27678
ORF7a95E95XnonsynGaaTaa300930050.99867127676-27678
ORF7a95E95XnonsynGAaTGa300940.0013293527676-27678
ORF7a95E95QnonsynGaaCaa101810150.99705327676-27678
ORF7a95E95QnonsynGaACaG101830.0029469527676-27678
ORF7a95E95KnonsynGaaAaa3503480.99428627676-27678
ORF7a95E95KnonsynGaAAaG35020.0057142927676-27678
ORF7a95E95AnonsyngAagCa2542520.99212627676-27678
ORF7a95E95AnonsyngAAgCC25420.0078740227676-27678
ORF7a95E95EsyngaAgaG180180127676-27678
ORF7a95E95del2delgAAg--1681660.98809527676-27678
ORF7a95E95del2delGAa--a16810.0059523827676-27678
ORF7a95E95del2delGAA--T16810.0059523827676-27678
ORF7a95E95GnonsyngAagGa1251220.97627676-27678
ORF7a95E95GnonsyngAAgGG12510.00827676-27678
ORF7a95E95GnonsyngAAgGT12510.00827676-27678
ORF7a95E95GnonsyngAAgGC12510.00827676-27678
ORF7a95E95del1delGaa-aa79610.77215227676-27678
ORF7a95E95del1delgaAga-79150.18987327676-27678
ORF7a95E95del1delgAag-a7930.037974727676-27678
ORF7a95E95DnonsyngaAgaC34250.73529427676-27678
ORF7a95E95DnonsyngaAgaT3490.26470627676-27678
ORF7a95E95VnonsyngAagTa2424127676-27678
ORF7a95E95RnonsynGAaAGa24230.95833327676-27678
ORF7a95E95RnonsynGAAAGG2410.041666727676-27678
ORF7a95E95FnonsynGAATTT1515127676-27678
ORF7a95E95YnonsynGaATaC44127676-27678
ORF7a95E95TnonsynGAaACa430.7527676-27678
ORF7a95E95TnonsynGAAACG410.2527676-27678
ORF7a95E95MnonsynGAAATG33127676-27678
ORF7a95E95LnonsynGAaTTa22127676-27678
ORF7a95E95SnonsynGAAAGT11127676-27678
ORF7a95E95NnonsynGaAAaT11127676-27678
ORF7a95E95InonsynGAAATT11127676-27678

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a95E95delGAA---31653165All0.000605
ORF7a95E95XGaaTaa30053009All0.000575
ORF7a95E95XGAaTGa43009All0.000001
ORF7a95E95delGAA---18761876B.1.1.70.001679
ORF7a95E95QGaaCaa10151018All0.000194
ORF7a95E95QGaACaG31018All0.000001
ORF7a95E95XGaaTaa752752B.1.1.70.000673
ORF7a95E95KGaaAaa348350All0.000067
ORF7a95E95KGaAAaG2350All0
ORF7a95E95XGaaTaa281281AY.9.20.010321
ORF7a95E95XGaaTaa262262B.1.617.20.000987
ORF7a95E95AgAagCa252254All0.000048
ORF7a95E95AgAAgCC2254All0
ORF7a95E95XGaaTaa248248AY.40.000386
ORF7a95E95delGAA---243243AY.40.000378
ORF7a95E95EgaAgaG180180All0.000034
ORF7a95E95del2gAAg--166168All0.000032
ORF7a95E95del2GAa--a1168All0
ORF7a95E95del2GAA--T1168All0
ORF7a95E95GgAagGa122125All0.000023
ORF7a95E95GgAAgGC1125All0
ORF7a95E95GgAAgGG1125All0
ORF7a95E95GgAAgGT1125All0
ORF7a95E95XGaaTaa114114AY.1030.000708
ORF7a95E95QGaaCaa113113AB.10.92623
ORF7a95E95XGaaTaa113113AY.430.000501
ORF7a95E95QGaaCaa109109AY.40.00017
ORF7a95E95XGaaTaa107107AY.50.002209
ORF7a95E95QGaaCaa107107B.1.1.70.000096
ORF7a95E95AgAagCa105105AY.190.119726
ORF7a95E95KGaaAaa101101B.1.1.70.00009
ORF7a95E95del2gAAg--9191AY.40.000142
ORF7a95E95QGaaCaa8080AY.420.003218
ORF7a95E95del1Gaa-aa6179All0.000012
ORF7a95E95del1gaAga-1579All0.000003
ORF7a95E95del1gAag-a379All0.000001
ORF7a95E95delGAA---7676AY.290.001199
ORF7a95E95AgAagCa7676B.1.617.20.000286
ORF7a95E95QGaaCaa7373B.1.2210.005185
ORF7a95E95delGAA---7272AY.1030.000447
ORF7a95E95delGAA---6767AY.250.000403
ORF7a95E95XGaaTaa6565AY.440.000396
ORF7a95E95EgaAgaG6565B.1.1.70.000058
ORF7a95E95QGaaCaa6060B.1.6090.028763
ORF7a95E95XGaaTaa5959AY.1020.001564
ORF7a95E95XGaaTaa5656AY.130.009015
ORF7a95E95XGaaTaa5656AY.23.10.023372
ORF7a95E95delGAA---5454B.1.20.000475
ORF7a95E95EgaAgaG5050B.1.6370.003654
ORF7a95E95XGaaTaa4848AY.1000.002208
ORF7a95E95QGaaCaa4545B.1.360.006566
ORF7a95E95delGAA---4343B.1.617.20.000162
ORF7a95E95delGAA---4242AY.30.000418
ORF7a95E95delGAA---4242AY.430.000186
ORF7a95E95GgAagGa4242B.1.1.70.000038
ORF7a95E95XGaaTaa4141AY.390.001013
ORF7a95E95XGaaTaa4141AY.5.40.011345
ORF7a95E95del2gAAg--4041B.1.1.70.000036
ORF7a95E95del2GAa--a141B.1.1.70.000001
ORF7a95E95QGaaCaa4040B.1.4290.000941
ORF7a95E95delGAA---3939AY.390.000964
ORF7a95E95delGAA---3737B.1.1.2840.003974
ORF7a95E95XGaaTaa3636AY.250.000217
ORF7a95E95KGaaAaa3535B.1.1.3060.015344
ORF7a95E95DgaAgaC2534All0.000005
ORF7a95E95DgaAgaT934All0.000002
ORF7a95E95EgaAgaG3333AY.1030.000205
ORF7a95E95del1Gaa-aa3133AY.40.000048
ORF7a95E95del1gaAga-233AY.40.000003
ORF7a95E95delGAA---3333B.10.000302
ORF7a95E95delGAA---3333B.1.1.2140.00183
ORF7a95E95delGAA---3333B.1.6210.002921
ORF7a95E95QGaaCaa3131AY.30.000308
ORF7a95E95XGaaTaa3131B.1.1770.000408
ORF7a95E95KGaaAaa2828AY.4.2.10.004172
ORF7a95E95XGaaTaa2828AY.720.038095
ORF7a95E95XGaaTaa2627AY.30.000259
ORF7a95E95XGAaTGa127AY.30.00001
ORF7a95E95QGaaCaa2626B.1.20.000229
ORF7a95E95QGaaCaa2525AY.1030.000155
ORF7a95E95XGaaTaa2525AY.1190.000883
ORF7a95E95QGaaCaa2525AY.430.000111
ORF7a95E95XGaaTaa2225P.10.000347
ORF7a95E95XGAaTGa325P.10.000047
ORF7a95E95VgAagTa2424All0.000005
ORF7a95E95RGAaAGa2324All0.000004
ORF7a95E95RGAAAGG124All0
ORF7a95E95QGaaCaa2424B.10.00022
ORF7a95E95delGAA---2323AY.440.00014
ORF7a95E95KGaaAaa2323B.1.1600.000717
ORF7a95E95delGAA---2323P.10.000362
ORF7a95E95XGaaTaa2222AY.1200.000818
ORF7a95E95delGAA---2121AY.3.10.00179
ORF7a95E95XGaaTaa2020AY.60.000823
ORF7a95E95delGAA---2020AY.7.20.011186
ORF7a95E95RGAaAGa2020B.1.10.000363
ORF7a95E95delGAA---2020B.1.3510.000595
ORF7a95E95XGaaTaa1919AY.260.000538
ORF7a95E95XGaaTaa1919AY.750.001064
ORF7a95E95XGaaTaa1818AY.460.001873
ORF7a95E95XGaaTaa1818B.1.177.610.782609
ORF7a95E95QGaaCaa1818P.10.000284
ORF7a95E95KGaaAaa1717B.1.617.20.000064
ORF7a95E95KGaaAaa1616B.1.10.00029
ORF7a95E95delGAA---1616B.1.1.2220.003264
ORF7a95E95XGaaTaa1616B.1.1.2910.011878
ORF7a95E95delGAA---1616B.1.1.5190.000635
ORF7a95E95del1Gaa-aa1116B.1.1.70.00001
ORF7a95E95del1gaAga-516B.1.1.70.000004
ORF7a95E95FGAATTT1515All0.000003
ORF7a95E95delGAA---1515AY.260.000425
ORF7a95E95delGAA---1515B.1.1770.000198
ORF7a95E95XGaaTaa1515B.1.20.000132
ORF7a95E95XGaaTaa1515B.1.5260.000353
ORF7a95E95XGaaTaa1414AY.1210.001894
ORF7a95E95GgAagGa1414AY.440.000085
ORF7a95E95XGaaTaa1414AY.46.40.002303
ORF7a95E95XGaaTaa1414AY.730.009315
ORF7a95E95XGaaTaa1414B.1.1600.000437
ORF7a95E95AgAagCa1313AY.700.002711
ORF7a95E95XGaaTaa1313B.1.10.000236
ORF7a95E95delGAA---1313B.1.2340.001715
ORF7a95E95QGaaCaa1313B.1.36.180.005462
ORF7a95E95QGaaCaa1313B.1.617.20.000049
ORF7a95E95delGAA---1212AY.1000.000552
ORF7a95E95XGaaTaa1212AY.230.000837
ORF7a95E95XGaaTaa1212B.10.00011
ORF7a95E95delGAA---1212B.1.10.000218
ORF7a95E95QGaaCaa1012B.1.10.000181
ORF7a95E95QGaACaG212B.1.10.000036
ORF7a95E95XGaaTaa1212B.1.1890.051502
ORF7a95E95QGaaCaa1212B.1.466.20.004695
ORF7a95E95KGaaAaa1111A.23.10.007746
ORF7a95E95delGAA---1111AY.1210.001488
ORF7a95E95KGaaAaa1111AY.250.000066
ORF7a95E95XGaaTaa1111AY.450.001339
ORF7a95E95delGAA---1111B.1.6370.000804
ORF7a95E95GgAagGa1010AY.430.000044
ORF7a95E95XGaaTaa1010AY.98.10.000484
ORF7a95E95KGaaAaa1010P.10.000158
ORF7a95E95del2gAAg--99AY.1030.000056
ORF7a95E95GgAagGa99AY.260.000255
ORF7a95E95KGaaAaa99B.10.000082
ORF7a95E95DgaAgaC99B.1.1.70.000008
ORF7a95E95QGaaCaa99B.1.1770.000119
ORF7a95E95XGaaTaa99B.1.177.810.001704
ORF7a95E95XGaaTaa99B.1.3190.027439
ORF7a95E95delGAA---99B.1.5260.000212
ORF7a95E95QGaaCaa99B.1.621.10.004552
ORF7a95E95QGaaCaa99C.370.001045
ORF7a95E95delGAA---99R.10.00081
ORF7a95E95XGaaTaa88AY.1160.002294
ORF7a95E95KGaaAaa88AY.46.40.001316
ORF7a95E95delGAA---88B.1.1600.00025
ORF7a95E95QGaaCaa88B.1.1600.00025
ORF7a95E95KGaaAaa88B.1.1770.000105
ORF7a95E95del2gAAg--88B.1.2340.001056
ORF7a95E95XGaaTaa88C.370.000929
ORF7a95E95VgAagTa77B.1.1.70.000006
ORF7a95E95QGaaCaa77B.1.2320.003761
ORF7a95E95XGaaTaa77B.1.2400.001509
ORF7a95E95QGaaCaa77B.1.2430.000487
ORF7a95E95KGaaAaa77B.1.4270.000353
ORF7a95E95delGAA---77B.1.5250.000792
ORF7a95E95KGaaAaa77B.1.6370.000512
ORF7a95E95delGAA---77C.370.000812
ORF7a95E95delGAA---66AY.1200.000223
ORF7a95E95XGaaTaa66AY.200.000233
ORF7a95E95delGAA---66AY.420.000241
ORF7a95E95XGaaTaa66AY.610.000629
ORF7a95E95EgaAgaG66B.1.1.5190.000238
ORF7a95E95XGaaTaa66B.1.177.830.008889
ORF7a95E95QGaaCaa66B.1.3510.000178
ORF7a95E95XGaaTaa66B.1.6280.002114
ORF7a95E95XGaaTaa66P.1.140.000287
ORF7a95E95KGaaAaa66P.1.140.000287
ORF7a95E95XGaaTaa66P.1.70.001916
ORF7a95E95QGaaCaa66Q.10.000758
ORF7a95E95del1Gaa-aa55AY.1000.00023
ORF7a95E95XGaaTaa55AY.1170.000423
ORF7a95E95QGaaCaa55AY.1180.000313
ORF7a95E95XGaaTaa55AY.120.00158
ORF7a95E95delGAA---55AY.230.000349
ORF7a95E95del1Gaa-aa55AY.250.00003
ORF7a95E95GgAagGa55AY.40.000008
ORF7a95E95AgAagCa55AY.40.000008
ORF7a95E95XGaaTaa55AY.4.2.10.000745
ORF7a95E95QGaaCaa55AY.440.00003
ORF7a95E95GgAagGa55AY.590.002648
ORF7a95E95delGAA---55AY.98.10.000242
ORF7a95E95XGaaTaa55B.1.4270.000252
ORF7a95E95XGaaTaa55B.1.617.10.000645
ORF7a95E95XGaaTaa55D.20.000375
ORF7a95E95del1gaAga-55P.10.000079
ORF7a95E95EgaAgaG55P.10.000079
ORF7a95E95delGAA---55P.1.150.001162
ORF7a95E95delGAA---55Q.80.000825
ORF7a95E95YGaATaC44All0.000001
ORF7a95E95TGAaACa34All0.000001
ORF7a95E95TGAAACG14All0
ORF7a95E95XGaaTaa44AY.1110.000733
ORF7a95E95XGaaTaa44AY.1130.00057
ORF7a95E95delGAA---44AY.1180.000251
ORF7a95E95QGaaCaa44AY.1190.000141
ORF7a95E95QGaaCaa44AY.290.000063
ORF7a95E95XGaaTaa44AY.290.000063
ORF7a95E95XGaaTaa44AY.330.000267
ORF7a95E95QGaaCaa44AY.370.001264
ORF7a95E95XGaaTaa44AY.39.10.000158
ORF7a95E95QGaaCaa44AY.39.10.000158
ORF7a95E95KGaaAaa44AY.40.000006
ORF7a95E95VgAagTa44AY.40.000006
ORF7a95E95delGAA---44AY.4.20.000087
ORF7a95E95XGaaTaa44AY.420.000161
ORF7a95E95XGaaTaa44AY.470.000124
ORF7a95E95XGaaTaa44AY.5.30.00135
ORF7a95E95XGaaTaa44AY.550.00367
ORF7a95E95KGaaAaa44AY.570.002625
ORF7a95E95QGaaCaa44AY.610.000419
ORF7a95E95XGaaTaa44AY.70.000784
ORF7a95E95XGaaTaa44AY.75.10.000721
ORF7a95E95delGAA---44AY.790.004843
ORF7a95E95XGaaTaa44AY.980.000316
ORF7a95E95EgaAgaG44B.1.10.000073
ORF7a95E95XGaaTaa44B.1.1.3180.001207
ORF7a95E95XGaaTaa44B.1.1.5190.000159
ORF7a95E95QGaaCaa44B.1.1.5190.000159
ORF7a95E95YGaATaC44B.1.1.70.000004
ORF7a95E95XGaaTaa44B.1.177.860.000734
ORF7a95E95KGaaAaa44B.1.20.000035
ORF7a95E95del2gAAg--44B.1.20.000035
ORF7a95E95GgAagGa44B.1.20.000035
ORF7a95E95delGAA---44B.1.2580.000266
ORF7a95E95AgAagCa44B.1.3110.001098
ORF7a95E95XGaaTaa44B.1.3510.000119
ORF7a95E95GgAagGa44B.1.617.20.000015
ORF7a95E95AgAagCa44Q.10.000505
ORF7a95E95delGAA---44Q.10.000505
ORF7a95E95MGAAATG33All0.000001
ORF7a95E95AgAagCa33AY.100.00159
ORF7a95E95QGaaCaa33AY.1100.000338
ORF7a95E95XGaaTaa33AY.1180.000188
ORF7a95E95delGAA---33AY.1190.000106
ORF7a95E95GgAagGa33AY.200.000117
ORF7a95E95delGAA---33AY.200.000117
ORF7a95E95GgAagGa33AY.250.000018
ORF7a95E95XGaaTaa33AY.270.000194
ORF7a95E95EgaAgaG33AY.40.000005
ORF7a95E95delGAA---33AY.4.50.000322
ORF7a95E95KGaaAaa33AY.430.000013
ORF7a95E95delGAA---33AY.46.40.000494
ORF7a95E95delGAA---33AY.470.000093
ORF7a95E95QGaaCaa33AY.510.002727
ORF7a95E95XGaaTaa33AY.540.000286
ORF7a95E95AgAagCa33AY.610.000314
ORF7a95E95XGaaTaa33AY.7.20.001678
ORF7a95E95XGaaTaa33AY.840.001312
ORF7a95E95XGaaTaa33AY.9.10.000251
ORF7a95E95delGAA---33AY.9.10.000251
ORF7a95E95del1Gaa-aa33B.10.000027
ORF7a95E95FGAATTT33B.1.10.000054
ORF7a95E95delGAA---33B.1.1.2690.00406
ORF7a95E95delGAA---33B.1.160.280.008772
ORF7a95E95XGaaTaa33B.1.177.210.000229
ORF7a95E95KGaaAaa33B.1.177.40.000633
ORF7a95E95delGAA---33B.1.177.860.00055
ORF7a95E95delGAA---33B.1.360.000438
ORF7a95E95FGAATTT33B.1.36.10.003421
ORF7a95E95QGaaCaa33B.1.36.170.001482
ORF7a95E95XGaaTaa33B.1.36.80.003
ORF7a95E95delGAA---33B.1.4270.000151
ORF7a95E95XGaaTaa33B.1.4290.000071
ORF7a95E95delGAA---33B.1.4290.000071
ORF7a95E95GgAagGa33B.1.5090.002597
ORF7a95E95KGaaAaa33B.1.5380.024194
ORF7a95E95delGAA---33B.1.5750.00091
ORF7a95E95QGaaCaa33B.1.5870.005693
ORF7a95E95XGaaTaa33B.1.6210.000266
ORF7a95E95delGAA---33B.1.6260.017143
ORF7a95E95del2gAAg--33Q.30.000435
ORF7a95E95XGaaTaa33Q.70.003333
ORF7a95E95QGaaCaa33R.10.00027
ORF7a95E95delGAA---220.111111
ORF7a95E95delGAA---22A0.000774
ORF7a95E95EgaAgaG22A.2.50.000998
ORF7a95E95del2gAAg--22A.2.50.000998
ORF7a95E95QGaaCaa22A.210.00554
ORF7a95E95delGAA---22A.280.005291
ORF7a95E95VgAagTa22AE.50.037037
ORF7a95E95LGAaTTa22All0
ORF7a95E95KGaaAaa22AY.1030.000012
ORF7a95E95XGaaTaa22AY.1060.00067
ORF7a95E95delGAA---22AY.1080.002205
ORF7a95E95XGaaTaa22AY.1090.001479
ORF7a95E95AgAagCa22AY.110.002677
ORF7a95E95XGaaTaa22AY.1100.000225
ORF7a95E95delGAA---22AY.1140.000462
ORF7a95E95DgaAgaC22AY.116.10.000623
ORF7a95E95XGaaTaa22AY.116.10.000623
ORF7a95E95delGAA---22AY.120.000632
ORF7a95E95QGaaCaa22AY.1210.000271
ORF7a95E95QGaaCaa22AY.200.000078
ORF7a95E95delGAA---22AY.240.000862
ORF7a95E95VgAagTa22AY.250.000012
ORF7a95E95AgAagCa22AY.250.000012
ORF7a95E95XGaaTaa22AY.300.000791
ORF7a95E95XGaaTaa22AY.340.000194
ORF7a95E95delGAA---22AY.340.000194
ORF7a95E95XGaaTaa22AY.360.000296
ORF7a95E95delGAA---22AY.360.000296
ORF7a95E95DgaAgaC22AY.40.000003
ORF7a95E95KGaaAaa22AY.4.20.000043
ORF7a95E95QGaaCaa22AY.4.20.000043
ORF7a95E95EgaAgaG22AY.430.000009
ORF7a95E95KGaaAaa22AY.440.000012
ORF7a95E95delGAA---22AY.450.000243
ORF7a95E95XGaaTaa22AY.46.20.001271
ORF7a95E95XGaaTaa22AY.46.60.000144
ORF7a95E95QGaaCaa22AY.470.000062
ORF7a95E95QGaaCaa22AY.50.000041
ORF7a95E95delGAA---22AY.50.000041
ORF7a95E95XGaaTaa22AY.7.10.000225
ORF7a95E95XGaaTaa22AY.710.00095
ORF7a95E95XGaaTaa22AY.740.000231
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