CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7a | 94 | Q94K | nonsyn | Caa | Aaa | 1272 | 1272 | 1 | 27673-27675 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7a | 94 | Q94K | Caa | Aaa | 1272 | 1272 | All | 0.000243 |
ORF7a | 94 | Q94K | Caa | Aaa | 175 | 175 | B.1.1.7 | 0.000157 |
ORF7a | 94 | Q94K | Caa | Aaa | 159 | 159 | B.1.617.2 | 0.000599 |
ORF7a | 94 | Q94K | Caa | Aaa | 146 | 146 | AY.4 | 0.000227 |
ORF7a | 94 | Q94K | Caa | Aaa | 76 | 76 | AY.103 | 0.000472 |
ORF7a | 94 | Q94K | Caa | Aaa | 62 | 62 | AY.3 | 0.000617 |
ORF7a | 94 | Q94K | Caa | Aaa | 57 | 57 | AY.44 | 0.000347 |
ORF7a | 94 | Q94K | Caa | Aaa | 46 | 46 | AY.43 | 0.000204 |
ORF7a | 94 | Q94K | Caa | Aaa | 37 | 37 | AY.100 | 0.001702 |
ORF7a | 94 | Q94K | Caa | Aaa | 37 | 37 | AY.66 | 0.039572 |
ORF7a | 94 | Q94K | Caa | Aaa | 37 | 37 | AY.7.1 | 0.00417 |
ORF7a | 94 | Q94K | Caa | Aaa | 24 | 24 | AY.47 | 0.000747 |
ORF7a | 94 | Q94K | Caa | Aaa | 20 | 20 | AY.29 | 0.000315 |
ORF7a | 94 | Q94K | Caa | Aaa | 20 | 20 | AY.9.1 | 0.001674 |
ORF7a | 94 | Q94K | Caa | Aaa | 20 | 20 | B.1.429 | 0.000471 |
ORF7a | 94 | Q94K | Caa | Aaa | 19 | 19 | B.1 | 0.000174 |
ORF7a | 94 | Q94K | Caa | Aaa | 17 | 17 | AY.25 | 0.000102 |
ORF7a | 94 | Q94K | Caa | Aaa | 14 | 14 | AY.102 | 0.000371 |
ORF7a | 94 | Q94K | Caa | Aaa | 14 | 14 | B.1.258 | 0.000932 |
ORF7a | 94 | Q94K | Caa | Aaa | 13 | 13 | B.1.2 | 0.000114 |
ORF7a | 94 | Q94K | Caa | Aaa | 12 | 12 | B.1.621 | 0.001062 |
ORF7a | 94 | Q94K | Caa | Aaa | 11 | 11 | B.1.637 | 0.000804 |
ORF7a | 94 | Q94K | Caa | Aaa | 10 | 10 | AY.117 | 0.000845 |
ORF7a | 94 | Q94K | Caa | Aaa | 8 | 8 | AY.26 | 0.000226 |
ORF7a | 94 | Q94K | Caa | Aaa | 8 | 8 | AY.75.1 | 0.001442 |
ORF7a | 94 | Q94K | Caa | Aaa | 8 | 8 | B.1.160 | 0.00025 |
ORF7a | 94 | Q94K | Caa | Aaa | 8 | 8 | B.1.235 | 0.020151 |
ORF7a | 94 | Q94K | Caa | Aaa | 8 | 8 | P.1.14 | 0.000382 |
ORF7a | 94 | Q94K | Caa | Aaa | 7 | 7 | B.1.177.77 | 0.005084 |
ORF7a | 94 | Q94K | Caa | Aaa | 6 | 6 | AY.20 | 0.000233 |
ORF7a | 94 | Q94K | Caa | Aaa | 6 | 6 | AY.5 | 0.000124 |
ORF7a | 94 | Q94K | Caa | Aaa | 6 | 6 | B.1.1 | 0.000109 |
ORF7a | 94 | Q94K | Caa | Aaa | 6 | 6 | B.1.628 | 0.002114 |
ORF7a | 94 | Q94K | Caa | Aaa | 5 | 5 | AY.121 | 0.000677 |
ORF7a | 94 | Q94K | Caa | Aaa | 5 | 5 | AY.14 | 0.00044 |
ORF7a | 94 | Q94K | Caa | Aaa | 5 | 5 | AY.61 | 0.000524 |
ORF7a | 94 | Q94K | Caa | Aaa | 5 | 5 | B.1.1.25 | 0.002843 |
ORF7a | 94 | Q94K | Caa | Aaa | 5 | 5 | B.1.177 | 0.000066 |
ORF7a | 94 | Q94K | Caa | Aaa | 5 | 5 | C.37 | 0.00058 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | AY.116 | 0.001147 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | AY.12 | 0.001264 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | AY.39 | 0.000099 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | AY.4.2 | 0.000087 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | AY.5.3 | 0.00135 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | AY.54 | 0.000381 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | B.1.526 | 0.000094 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | B.1.565 | 0.003241 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | B.1.609 | 0.001918 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF7a | 94 | Q94K | Caa | Aaa | 4 | 4 | P.1 | 0.000063 |
ORF7a | 94 | Q94K | Caa | Aaa | 3 | 3 | AY.119 | 0.000106 |
ORF7a | 94 | Q94K | Caa | Aaa | 3 | 3 | AY.3.1 | 0.000256 |
ORF7a | 94 | Q94K | Caa | Aaa | 3 | 3 | AY.42 | 0.000121 |
ORF7a | 94 | Q94K | Caa | Aaa | 3 | 3 | AY.98.1 | 0.000145 |
ORF7a | 94 | Q94K | Caa | Aaa | 3 | 3 | B.1.1.506 | 0.111111 |
ORF7a | 94 | Q94K | Caa | Aaa | 3 | 3 | B.1.1.519 | 0.000119 |
ORF7a | 94 | Q94K | Caa | Aaa | 3 | 3 | Q.3 | 0.000435 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | A | 0.000774 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | AY.120 | 0.000074 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | AY.23 | 0.000139 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | AY.39.1 | 0.000079 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | AY.46.6 | 0.000144 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | AY.5.4 | 0.000553 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | AY.9.2 | 0.000073 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | B.1.1.164 | 0.010309 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | B.1.1.312 | 0.003824 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | B.1.241 | 0.001623 |
ORF7a | 94 | Q94K | Caa | Aaa | 2 | 2 | B.1.486 | 0.222222 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | A.23.1 | 0.000704 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AE.8 | 0.000489 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AU.3 | 0.00211 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.1 | 0.000396 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.109 | 0.00074 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.113 | 0.000142 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.120.1 | 0.000321 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.13 | 0.000161 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.27 | 0.000065 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.29.1 | 0.000221 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.32 | 0.000532 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.33 | 0.000067 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.36 | 0.000148 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.4.5 | 0.000107 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.46.4 | 0.000165 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.46.5 | 0.000198 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.52 | 0.000814 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.53 | 0.000288 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.56 | 0.001605 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.6 | 0.000041 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.67 | 0.000464 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.7 | 0.000196 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.7.2 | 0.000559 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.75 | 0.000056 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.84 | 0.000437 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.85 | 0.000427 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.95 | 0.000761 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.98 | 0.000079 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | AY.99.2 | 0.000092 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B | 0.000128 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.1.165 | 0.015385 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.1.375 | 0.011905 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.1.98 | 0.018519 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.177.8 | 0.000752 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.301 | 0.005917 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.351 | 0.00003 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.36.25 | 0.002208 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.369 | 0.000285 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.427 | 0.00005 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.551 | 0.00129 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.575.1 | 0.002439 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.596 | 0.000087 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | B.1.623 | 0.000536 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | C.30 | 0.001727 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | C.35 | 0.000774 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | D.2 | 0.000075 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | P.1.1 | 0.000318 |
ORF7a | 94 | Q94K | Caa | Aaa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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