CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 94

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF7a	94	Q94L		nonsyn	cAa	cTa	8265	8256	0.998911	27673-27675
ORF7a	94	Q94L		nonsyn	cAA	cTT	8265	5	0.000604961	27673-27675
ORF7a	94	Q94L		nonsyn	cAA	cTG	8265	2	0.000241984	27673-27675
ORF7a	94	Q94L		nonsyn	CAa	TTa	8265	2	0.000241984	27673-27675
ORF7a	94	Q94X		nonsyn	Caa	Taa	3220	3220	1	27673-27675
ORF7a	94	Q94del		del	CAA	---	2908	2908	1	27673-27675
ORF7a	94	Q94H		nonsyn	caA	caC	1702	1596	0.93772	27673-27675
ORF7a	94	Q94H		nonsyn	caA	caT	1702	106	0.0622797	27673-27675
ORF7a	94	Q94K		nonsyn	Caa	Aaa	1272	1272	1	27673-27675
ORF7a	94	Q94R		nonsyn	cAa	cGa	551	542	0.983666	27673-27675
ORF7a	94	Q94R		nonsyn	CAa	AGa	551	7	0.0127042	27673-27675
ORF7a	94	Q94R		nonsyn	cAA	cGG	551	2	0.00362976	27673-27675
ORF7a	94	Q94E		nonsyn	Caa	Gaa	130	127	0.976923	27673-27675
ORF7a	94	Q94E		nonsyn	CaA	GaG	130	3	0.0230769	27673-27675
ORF7a	94	Q94Q		syn	caA	caG	117	117	1	27673-27675
ORF7a	94	Q94P		nonsyn	cAa	cCa	60	39	0.65	27673-27675
ORF7a	94	Q94P		nonsyn	cAA	cCT	60	21	0.35	27673-27675
ORF7a	94	Q94del1		del	caA	ca-	50	20	0.4	27673-27675
ORF7a	94	Q94del1		del	Caa	-aa	50	20	0.4	27673-27675
ORF7a	94	Q94del1		del	cAA	c-T	50	5	0.1	27673-27675
ORF7a	94	Q94del1		del	cAa	c-a	50	5	0.1	27673-27675
ORF7a	94	Q94I		nonsyn	CAA	ATT	19	18	0.947368	27673-27675
ORF7a	94	Q94I		nonsyn	CAa	ATa	19	1	0.0526316	27673-27675
ORF7a	94	Q94T		nonsyn	CAa	ACa	18	18	1	27673-27675
ORF7a	94	Q94N		nonsyn	CaA	AaT	15	14	0.933333	27673-27675
ORF7a	94	Q94N		nonsyn	CaA	AaC	15	1	0.0666667	27673-27675
ORF7a	94	Q94del2		del	CAa	--a	11	5	0.454545	27673-27675
ORF7a	94	Q94del2		del	cAA	c--	11	4	0.363636	27673-27675
ORF7a	94	Q94del2		del	CAA	--N	11	2	0.181818	27673-27675
ORF7a	94	Q94V		nonsyn	CAa	GTa	2	2	1	27673-27675
ORF7a	94	Q94D		nonsyn	CaA	GaT	1	1	1	27673-27675
ORF7a	94	Q94G		nonsyn	CAa	GGa	1	1	1	27673-27675
ORF7a	94	Q94Y		nonsyn	CaA	TaT	1	1	1	27673-27675

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF7a	94	Q94L	cAa	cTa	8256	8265	All	0.001579
ORF7a	94	Q94L	cAA	cTT	5	8265	All	0.000001
ORF7a	94	Q94L	CAa	TTa	2	8265	All	0
ORF7a	94	Q94L	cAA	cTG	2	8265	All	0
ORF7a	94	Q94L	cAa	cTa	7379	7383	B.1.1.7	0.006606
ORF7a	94	Q94L	CAa	TTa	2	7383	B.1.1.7	0.000002
ORF7a	94	Q94L	cAA	cTT	2	7383	B.1.1.7	0.000002
ORF7a	94	Q94X	Caa	Taa	3220	3220	All	0.000616
ORF7a	94	Q94del	CAA	---	2908	2908	All	0.000556
ORF7a	94	Q94H	caA	caC	1596	1702	All	0.000305
ORF7a	94	Q94H	caA	caT	106	1702	All	0.00002
ORF7a	94	Q94del	CAA	---	1682	1682	B.1.1.7	0.001506
ORF7a	94	Q94K	Caa	Aaa	1272	1272	All	0.000243
ORF7a	94	Q94X	Caa	Taa	1194	1194	B.1.1.7	0.001069
ORF7a	94	Q94R	cAa	cGa	542	551	All	0.000104
ORF7a	94	Q94R	CAa	AGa	7	551	All	0.000001
ORF7a	94	Q94R	cAA	cGG	2	551	All	0
ORF7a	94	Q94L	cAa	cTa	466	466	B.1.1.302	0.966805
ORF7a	94	Q94H	caA	caC	366	375	B.1.1.7	0.000328
ORF7a	94	Q94H	caA	caT	9	375	B.1.1.7	0.000008
ORF7a	94	Q94X	Caa	Taa	366	366	AY.25	0.002201
ORF7a	94	Q94H	caA	caC	327	328	B.1.621	0.028946
ORF7a	94	Q94H	caA	caT	1	328	B.1.621	0.000089
ORF7a	94	Q94del	CAA	---	240	240	AY.4	0.000374
ORF7a	94	Q94R	cAa	cGa	189	189	AY.54	0.018021
ORF7a	94	Q94K	Caa	Aaa	175	175	B.1.1.7	0.000157
ORF7a	94	Q94K	Caa	Aaa	159	159	B.1.617.2	0.000599
ORF7a	94	Q94X	Caa	Taa	155	155	AY.75	0.008683
ORF7a	94	Q94K	Caa	Aaa	146	146	AY.4	0.000227
ORF7a	94	Q94X	Caa	Taa	133	133	AY.43	0.000589
ORF7a	94	Q94E	Caa	Gaa	127	130	All	0.000024
ORF7a	94	Q94E	CaA	GaG	3	130	All	0.000001
ORF7a	94	Q94X	Caa	Taa	126	126	AY.4	0.000196
ORF7a	94	Q94L	cAa	cTa	121	121	AY.4	0.000188
ORF7a	94	Q94R	cAa	cGa	118	118	AY.47	0.00367
ORF7a	94	Q94Q	caA	caG	117	117	All	0.000022
ORF7a	94	Q94H	caA	caC	101	107	AY.4	0.000157
ORF7a	94	Q94H	caA	caT	6	107	AY.4	0.000009
ORF7a	94	Q94E	Caa	Gaa	103	103	B.1.1.7	0.000092
ORF7a	94	Q94X	Caa	Taa	93	93	B.1.617.2	0.00035
ORF7a	94	Q94L	cAa	cTa	89	90	B.1.617.2	0.000335
ORF7a	94	Q94L	cAA	cTT	1	90	B.1.617.2	0.000004
ORF7a	94	Q94R	cAa	cGa	86	88	B.1.1.7	0.000077
ORF7a	94	Q94R	cAA	cGG	1	88	B.1.1.7	0.000001
ORF7a	94	Q94R	CAa	AGa	1	88	B.1.1.7	0.000001
ORF7a	94	Q94K	Caa	Aaa	76	76	AY.103	0.000472
ORF7a	94	Q94X	Caa	Taa	76	76	AY.20	0.002954
ORF7a	94	Q94del	CAA	---	76	76	AY.29	0.001199
ORF7a	94	Q94del	CAA	---	71	71	AY.103	0.000441
ORF7a	94	Q94del	CAA	---	70	70	AY.25	0.000421
ORF7a	94	Q94X	Caa	Taa	65	65	AY.3	0.000647
ORF7a	94	Q94K	Caa	Aaa	62	62	AY.3	0.000617
ORF7a	94	Q94P	cAa	cCa	39	60	All	0.000007
ORF7a	94	Q94P	cAA	cCT	21	60	All	0.000004
ORF7a	94	Q94X	Caa	Taa	60	60	AY.102	0.001591
ORF7a	94	Q94H	caA	caC	60	60	AY.4.2.1	0.008939
ORF7a	94	Q94K	Caa	Aaa	57	57	AY.44	0.000347
ORF7a	94	Q94X	Caa	Taa	51	51	AY.103	0.000317
ORF7a	94	Q94R	cAa	cGa	51	51	P.1.7	0.016284
ORF7a	94	Q94del1	Caa	-aa	20	50	All	0.000004
ORF7a	94	Q94del1	caA	ca-	20	50	All	0.000004
ORF7a	94	Q94del1	cAa	c-a	5	50	All	0.000001
ORF7a	94	Q94del1	cAA	c-T	5	50	All	0.000001
ORF7a	94	Q94X	Caa	Taa	50	50	B.1.2	0.00044
ORF7a	94	Q94H	caA	caC	49	49	AY.3	0.000487
ORF7a	94	Q94K	Caa	Aaa	46	46	AY.43	0.000204
ORF7a	94	Q94H	caA	caC	46	46	B.1.160.8	0.059278
ORF7a	94	Q94H	caA	caC	30	46	B.1.617.2	0.000113
ORF7a	94	Q94H	caA	caT	16	46	B.1.617.2	0.00006
ORF7a	94	Q94H	caA	caC	43	45	AY.25	0.000259
ORF7a	94	Q94H	caA	caT	2	45	AY.25	0.000012
ORF7a	94	Q94X	Caa	Taa	42	42	AY.119	0.001483
ORF7a	94	Q94del	CAA	---	42	42	AY.3	0.000418
ORF7a	94	Q94del	CAA	---	42	42	AY.43	0.000186
ORF7a	94	Q94H	caA	caT	26	40	AY.102	0.000689
ORF7a	94	Q94H	caA	caC	14	40	AY.102	0.000371
ORF7a	94	Q94del	CAA	---	40	40	AY.39	0.000988
ORF7a	94	Q94del	CAA	---	39	39	B.1.617.2	0.000147
ORF7a	94	Q94K	Caa	Aaa	37	37	AY.100	0.001702
ORF7a	94	Q94K	Caa	Aaa	37	37	AY.66	0.039572
ORF7a	94	Q94K	Caa	Aaa	37	37	AY.7.1	0.00417
ORF7a	94	Q94del	CAA	---	37	37	B.1.1.284	0.003974
ORF7a	94	Q94X	Caa	Taa	36	36	P.1	0.000567
ORF7a	94	Q94X	Caa	Taa	35	35	AY.44	0.000213
ORF7a	94	Q94H	caA	caC	32	34	AY.44	0.000195
ORF7a	94	Q94H	caA	caT	2	34	AY.44	0.000012
ORF7a	94	Q94del	CAA	---	34	34	B.1.2	0.000299
ORF7a	94	Q94X	Caa	Taa	34	34	B.1.525	0.003847
ORF7a	94	Q94H	caA	caC	32	33	B.1.2	0.000282
ORF7a	94	Q94H	caA	caT	1	33	B.1.2	0.000009
ORF7a	94	Q94X	Caa	Taa	32	32	AY.6	0.001316
ORF7a	94	Q94del	CAA	---	32	32	B.1.621	0.002833
ORF7a	94	Q94Q	caA	caG	31	31	AY.118	0.001942
ORF7a	94	Q94X	Caa	Taa	31	31	AY.42	0.001247
ORF7a	94	Q94del	CAA	---	31	31	B.1	0.000284
ORF7a	94	Q94H	caA	caC	29	29	AY.43	0.000128
ORF7a	94	Q94Q	caA	caG	26	26	B.1	0.000238
ORF7a	94	Q94X	Caa	Taa	26	26	B.1.1.145	0.962963
ORF7a	94	Q94H	caA	caC	17	25	AY.20	0.000661
ORF7a	94	Q94H	caA	caT	8	25	AY.20	0.000311
ORF7a	94	Q94X	Caa	Taa	25	25	AY.46	0.002602
ORF7a	94	Q94K	Caa	Aaa	24	24	AY.47	0.000747
ORF7a	94	Q94X	Caa	Taa	24	24	B.1.177	0.000316
ORF7a	94	Q94del	CAA	---	23	23	AY.3.1	0.001961
ORF7a	94	Q94L	cAa	cTa	23	23	AY.5	0.000475
ORF7a	94	Q94H	caA	caC	22	23	B.1	0.000202
ORF7a	94	Q94H	caA	caT	1	23	B.1	0.000009
ORF7a	94	Q94L	cAa	cTa	23	23	B.1.8	0.045365
ORF7a	94	Q94del	CAA	---	23	23	P.1	0.000362
ORF7a	94	Q94X	Caa	Taa	22	22	AY.39.1	0.000871
ORF7a	94	Q94del	CAA	---	22	22	AY.44	0.000134
ORF7a	94	Q94del	CAA	---	22	22	B.1.1.214	0.00122
ORF7a	94	Q94X	Caa	Taa	22	22	B.1.221	0.001563
ORF7a	94	Q94H	caA	caC	20	21	AY.103	0.000124
ORF7a	94	Q94H	caA	caT	1	21	AY.103	0.000006
ORF7a	94	Q94K	Caa	Aaa	20	20	AY.29	0.000315
ORF7a	94	Q94del	CAA	---	20	20	AY.7.2	0.011186
ORF7a	94	Q94K	Caa	Aaa	20	20	AY.9.1	0.001674
ORF7a	94	Q94X	Caa	Taa	20	20	B.1	0.000183
ORF7a	94	Q94H	caA	caC	20	20	B.1.243	0.001392
ORF7a	94	Q94K	Caa	Aaa	20	20	B.1.429	0.000471
ORF7a	94	Q94P	cAa	cCa	20	20	B.1.517	0.00854
ORF7a	94	Q94I	CAA	ATT	18	19	All	0.000003
ORF7a	94	Q94I	CAa	ATa	1	19	All	0
ORF7a	94	Q94H	caA	caC	19	19	AY.74	0.002197
ORF7a	94	Q94K	Caa	Aaa	19	19	B.1	0.000174
ORF7a	94	Q94del1	caA	ca-	8	19	B.1.1.7	0.000007
ORF7a	94	Q94del1	Caa	-aa	6	19	B.1.1.7	0.000005
ORF7a	94	Q94del1	cAA	c-T	5	19	B.1.1.7	0.000004
ORF7a	94	Q94X	Caa	Taa	19	19	B.1.160	0.000593
ORF7a	94	Q94T	CAa	ACa	18	18	All	0.000003
ORF7a	94	Q94X	Caa	Taa	18	18	AY.29	0.000284
ORF7a	94	Q94L	cAa	cTa	18	18	AY.44	0.00011
ORF7a	94	Q94X	Caa	Taa	18	18	AY.98.1	0.000872
ORF7a	94	Q94T	CAa	ACa	18	18	B.1.1.7	0.000016
ORF7a	94	Q94H	caA	caC	18	18	B.1.36.21	0.038877
ORF7a	94	Q94K	Caa	Aaa	17	17	AY.25	0.000102
ORF7a	94	Q94I	CAA	ATT	17	17	AY.4	0.000026
ORF7a	94	Q94H	caA	caC	17	17	B.1.160	0.00053
ORF7a	94	Q94R	cAa	cGa	17	17	B.1.617.2	0.000064
ORF7a	94	Q94H	caA	caC	16	17	C.37	0.001857
ORF7a	94	Q94H	caA	caT	1	17	C.37	0.000116
ORF7a	94	Q94X	Caa	Taa	17	17	P.1.7	0.005428
ORF7a	94	Q94R	cAa	cGa	16	16	AY.103	0.000099
ORF7a	94	Q94del	CAA	---	16	16	B.1.1.222	0.003264
ORF7a	94	Q94L	cAa	cTa	16	16	B.1.177.33	0.026316
ORF7a	94	Q94X	Caa	Taa	16	16	B.1.351	0.000476
ORF7a	94	Q94H	caA	caC	15	15	AE.8	0.007335
ORF7a	94	Q94N	CaA	AaT	14	15	All	0.000003
ORF7a	94	Q94N	CaA	AaC	1	15	All	0
ORF7a	94	Q94L	cAa	cTa	15	15	AY.103	0.000093
ORF7a	94	Q94del	CAA	---	15	15	AY.26	0.000425
ORF7a	94	Q94del	CAA	---	15	15	B.1.1.519	0.000596
ORF7a	94	Q94K	Caa	Aaa	14	14	AY.102	0.000371
ORF7a	94	Q94X	Caa	Taa	14	14	B.1.1	0.000254
ORF7a	94	Q94del	CAA	---	14	14	B.1.177	0.000184
ORF7a	94	Q94K	Caa	Aaa	14	14	B.1.258	0.000932
ORF7a	94	Q94H	caA	caC	13	13	AY.33	0.000868
ORF7a	94	Q94K	Caa	Aaa	13	13	B.1.2	0.000114
ORF7a	94	Q94del	CAA	---	13	13	B.1.234	0.001715
ORF7a	94	Q94del	CAA	---	13	13	B.1.637	0.00095
ORF7a	94	Q94del	CAA	---	12	12	AY.100	0.000552
ORF7a	94	Q94H	caA	caC	12	12	AY.30	0.004749
ORF7a	94	Q94L	cAa	cTa	11	12	B.1	0.000101
ORF7a	94	Q94L	cAA	cTT	1	12	B.1	0.000009
ORF7a	94	Q94del	CAA	---	12	12	B.1.1	0.000218
ORF7a	94	Q94del1	Caa	-aa	12	12	B.1.324	0.019262
ORF7a	94	Q94K	Caa	Aaa	12	12	B.1.621	0.001062
ORF7a	94	Q94Q	caA	caG	12	12	D.2	0.0009
ORF7a	94	Q94del2	CAa	--a	5	11	All	0.000001
ORF7a	94	Q94del2	cAA	c--	4	11	All	0.000001
ORF7a	94	Q94del2	CAA	--N	2	11	All	0
ORF7a	94	Q94del	CAA	---	11	11	AY.121	0.001488
ORF7a	94	Q94R	cAa	cGa	10	11	AY.4	0.000016
ORF7a	94	Q94R	CAa	AGa	1	11	AY.4	0.000002
ORF7a	94	Q94L	cAa	cTa	11	11	AY.43	0.000049
ORF7a	94	Q94H	caA	caC	10	11	B.1.1	0.000181
ORF7a	94	Q94H	caA	caT	1	11	B.1.1	0.000018
ORF7a	94	Q94H	caA	caC	10	11	B.1.177	0.000132
ORF7a	94	Q94H	caA	caT	1	11	B.1.177	0.000013
ORF7a	94	Q94X	Caa	Taa	11	11	B.1.427	0.000555
ORF7a	94	Q94X	Caa	Taa	11	11	B.1.429	0.000259
ORF7a	94	Q94P	cAA	cCT	11	11	B.1.617.2	0.000041
ORF7a	94	Q94K	Caa	Aaa	11	11	B.1.637	0.000804
ORF7a	94	Q94K	Caa	Aaa	10	10	AY.117	0.000845
ORF7a	94	Q94X	Caa	Taa	10	10	AY.59	0.005297
ORF7a	94	Q94X	Caa	Taa	10	10	AY.61	0.001048
ORF7a	94	Q94X	Caa	Taa	10	10	B.1.526	0.000235
ORF7a	94	Q94X	Caa	Taa	10	10	B.1.637	0.000731
ORF7a	94	Q94H	caA	caC	10	10	R.1	0.0009
ORF7a	94	Q94X	Caa	Taa	9	9	AY.26	0.000255
ORF7a	94	Q94X	Caa	Taa	9	9	AY.3.1	0.000767
ORF7a	94	Q94X	Caa	Taa	9	9	AY.39	0.000222
ORF7a	94	Q94X	Caa	Taa	9	9	AY.47	0.00028
ORF7a	94	Q94R	cAa	cGa	9	9	B.1.2	0.000079
ORF7a	94	Q94H	caA	caC	9	9	B.1.231	0.290323
ORF7a	94	Q94del	CAA	---	9	9	B.1.351	0.000268
ORF7a	94	Q94H	caA	caC	9	9	B.1.526	0.000212
ORF7a	94	Q94Q	caA	caG	9	9	P.1	0.000142
ORF7a	94	Q94del	CAA	---	9	9	R.1	0.00081
ORF7a	94	Q94H	caA	caC	8	8	AY.2	0.002849
ORF7a	94	Q94K	Caa	Aaa	8	8	AY.26	0.000226
ORF7a	94	Q94X	Caa	Taa	8	8	AY.27	0.000518
ORF7a	94	Q94X	Caa	Taa	8	8	AY.46.4	0.001316
ORF7a	94	Q94H	caA	caC	7	8	AY.6	0.000288
ORF7a	94	Q94H	caA	caT	1	8	AY.6	0.000041
ORF7a	94	Q94K	Caa	Aaa	8	8	AY.75.1	0.001442
ORF7a	94	Q94Q	caA	caG	8	8	B.1.1.7	0.000007
ORF7a	94	Q94del	CAA	---	8	8	B.1.160	0.00025
ORF7a	94	Q94K	Caa	Aaa	8	8	B.1.160	0.00025
ORF7a	94	Q94K	Caa	Aaa	8	8	B.1.235	0.020151
ORF7a	94	Q94H	caA	caC	8	8	P.1	0.000126
ORF7a	94	Q94K	Caa	Aaa	8	8	P.1.14	0.000382
ORF7a	94	Q94X	Caa	Taa	8	8	Q.8	0.001319
ORF7a	94	Q94X	Caa	Taa	7	7	AY.33	0.000467
ORF7a	94	Q94L	cAa	cTa	7	7	AY.34	0.000679
ORF7a	94	Q94X	Caa	Taa	7	7	AY.4.4	0.002864
ORF7a	94	Q94R	cAa	cGa	7	7	AY.44	0.000043
ORF7a	94	Q94X	Caa	Taa	7	7	AY.5	0.000145
ORF7a	94	Q94X	Caa	Taa	7	7	AY.9.2	0.000257
ORF7a	94	Q94del1	caA	ca-	6	7	B.1	0.000055
ORF7a	94	Q94del1	Caa	-aa	1	7	B.1	0.000009
ORF7a	94	Q94H	caA	caC	7	7	B.1.1.214	0.000388
ORF7a	94	Q94P	cAA	cCT	6	7	B.1.1.7	0.000005
ORF7a	94	Q94P	cAa	cCa	1	7	B.1.1.7	0.000001
ORF7a	94	Q94K	Caa	Aaa	7	7	B.1.177.77	0.005084
ORF7a	94	Q94H	caA	caC	6	7	B.1.351	0.000178
ORF7a	94	Q94H	caA	caT	1	7	B.1.351	0.00003
ORF7a	94	Q94X	Caa	Taa	7	7	B.1.36	0.001021
ORF7a	94	Q94del	CAA	---	7	7	B.1.526	0.000165
ORF7a	94	Q94del	CAA	---	7	7	C.37	0.000812
ORF7a	94	Q94X	Caa	Taa	7	7	C.37	0.000812
ORF7a	94	Q94X	Caa	Taa	6	6	AY.100	0.000276
ORF7a	94	Q94H	caA	caC	6	6	AY.100	0.000276
ORF7a	94	Q94L	cAa	cTa	6	6	AY.119	0.000212
ORF7a	94	Q94X	Caa	Taa	6	6	AY.120	0.000223
ORF7a	94	Q94del	CAA	---	6	6	AY.120	0.000223
ORF7a	94	Q94K	Caa	Aaa	6	6	AY.20	0.000233
ORF7a	94	Q94Q	caA	caG	6	6	AY.4	0.000009
ORF7a	94	Q94del2	CAa	--a	5	6	AY.4	0.000008
ORF7a	94	Q94del2	cAA	c--	1	6	AY.4	0.000002
ORF7a	94	Q94X	Caa	Taa	6	6	AY.4.2	0.00013
ORF7a	94	Q94del	CAA	---	6	6	AY.42	0.000241
ORF7a	94	Q94R	CAa	AGa	4	6	AY.43	0.000018
ORF7a	94	Q94R	cAa	cGa	2	6	AY.43	0.000009
ORF7a	94	Q94K	Caa	Aaa	6	6	AY.5	0.000124
ORF7a	94	Q94X	Caa	Taa	6	6	AZ.2	0.004926
ORF7a	94	Q94K	Caa	Aaa	6	6	B.1.1	0.000109
ORF7a	94	Q94H	caA	caC	6	6	B.1.177.15	0.003785
ORF7a	94	Q94H	caA	caC	6	6	B.1.221	0.000426
ORF7a	94	Q94X	Caa	Taa	6	6	B.1.258	0.000399
ORF7a	94	Q94del	CAA	---	6	6	B.1.525	0.000679
ORF7a	94	Q94E	Caa	Gaa	5	6	B.1.525	0.000566
ORF7a	94	Q94E	CaA	GaG	1	6	B.1.525	0.000113
ORF7a	94	Q94X	Caa	Taa	6	6	B.1.575	0.00182
ORF7a	94	Q94K	Caa	Aaa	6	6	B.1.628	0.002114
ORF7a	94	Q94K	Caa	Aaa	5	5	AY.121	0.000677
ORF7a	94	Q94K	Caa	Aaa	5	5	AY.14	0.00044
ORF7a	94	Q94H	caA	caC	5	5	AY.14	0.00044
ORF7a	94	Q94del	CAA	---	5	5	AY.23	0.000349
ORF7a	94	Q94L	cAa	cTa	5	5	AY.25	0.00003
ORF7a	94	Q94H	caA	caC	5	5	AY.29	0.000079
ORF7a	94	Q94R	cAa	cGa	5	5	AY.33	0.000334
ORF7a	94	Q94H	caA	caC	5	5	AY.59	0.002648
ORF7a	94	Q94K	Caa	Aaa	5	5	AY.61	0.000524
ORF7a	94	Q94H	caA	caT	5	5	AY.90	0.003422
ORF7a	94	Q94del	CAA	---	5	5	AY.98.1	0.000242
ORF7a	94	Q94E	Caa	Gaa	5	5	B.1	0.000046
ORF7a	94	Q94K	Caa	Aaa	5	5	B.1.1.25	0.002843
ORF7a	94	Q94X	Caa	Taa	5	5	B.1.1.519	0.000199
ORF7a	94	Q94X	Caa	Taa	5	5	B.1.160.14	0.010593
ORF7a	94	Q94K	Caa	Aaa	5	5	B.1.177	0.000066
ORF7a	94	Q94H	caA	caC	5	5	B.1.258	0.000333
ORF7a	94	Q94X	Caa	Taa	5	5	B.1.311	0.001373
ORF7a	94	Q94L	cAa	cTa	5	5	B.1.427	0.000252
ORF7a	94	Q94H	caA	caC	4	5	B.1.427	0.000202
ORF7a	94	Q94H	caA	caT	1	5	B.1.427	0.00005
ORF7a	94	Q94K	Caa	Aaa	5	5	C.37	0.00058
ORF7a	94	Q94X	Caa	Taa	5	5	D.2	0.000375
ORF7a	94	Q94H	caA	caC	5	5	P.1.14	0.000239
ORF7a	94	Q94del	CAA	---	5	5	P.1.15	0.001162
ORF7a	94	Q94del	CAA	---	5	5	Q.1	0.000632
ORF7a	94	Q94X	Caa	Taa	4	4	AY.111	0.000733
ORF7a	94	Q94K	Caa	Aaa	4	4	AY.116	0.001147
ORF7a	94	Q94del	CAA	---	4	4	AY.118	0.000251
ORF7a	94	Q94H	caA	caC	2	4	AY.119	0.000071
ORF7a	94	Q94H	caA	caT	2	4	AY.119	0.000071
ORF7a	94	Q94K	Caa	Aaa	4	4	AY.12	0.001264
ORF7a	94	Q94H	caA	caC	4	4	AY.26	0.000113
ORF7a	94	Q94P	cAa	cCa	4	4	AY.3	0.00004
ORF7a	94	Q94L	cAa	cTa	4	4	AY.39	0.000099
ORF7a	94	Q94K	Caa	Aaa	4	4	AY.39	0.000099
ORF7a	94	Q94del	CAA	---	4	4	AY.4.2	0.000087
ORF7a	94	Q94K	Caa	Aaa	4	4	AY.4.2	0.000087
ORF7a	94	Q94H	caA	caT	4	4	AY.45	0.000487
ORF7a	94	Q94H	caA	caT	3	4	AY.5	0.000062
ORF7a	94	Q94H	caA	caC	1	4	AY.5	0.000021
ORF7a	94	Q94K	Caa	Aaa	4	4	AY.5.3	0.00135
ORF7a	94	Q94K	Caa	Aaa	4	4	AY.54	0.000381
ORF7a	94	Q94del	CAA	---	4	4	AY.79	0.004843
ORF7a	94	Q94L	cAa	cTa	4	4	AY.85	0.001709
ORF7a	94	Q94H	caA	caC	4	4	AY.99.2	0.000369
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.1.170	0.004988
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.1.214	0.000222
ORF7a	94	Q94H	caA	caC	4	4	B.1.1.519	0.000159
ORF7a	94	Q94H	caA	caC	4	4	B.1.258.17	0.000416
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.36.7	0.016
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.438.1	0.000429
ORF7a	94	Q94K	Caa	Aaa	4	4	B.1.526	0.000094
ORF7a	94	Q94K	Caa	Aaa	4	4	B.1.565	0.003241
ORF7a	94	Q94K	Caa	Aaa	4	4	B.1.609	0.001918
ORF7a	94	Q94K	Caa	Aaa	4	4	B.1.617.1	0.000516
ORF7a	94	Q94X	Caa	Taa	4	4	B.1.617.1	0.000516
ORF7a	94	Q94L	cAa	cTa	4	4	B.1.621	0.000354
ORF7a	94	Q94K	Caa	Aaa	4	4	P.1	0.000063
ORF7a	94	Q94X	Caa	Taa	4	4	P.1.14	0.000191
ORF7a	94	Q94X	Caa	Taa	4	4	P.1.16	0.001496
ORF7a	94	Q94del	CAA	---	4	4	Q.8	0.00066
ORF7a	94	Q94R	cAa	cGa	4	4	R.1	0.00036
ORF7a	94	Q94X	Caa	Taa	3	3	AE.8	0.001467
ORF7a	94	Q94K	Caa	Aaa	3	3	AY.119	0.000106
ORF7a	94	Q94del	CAA	---	3	3	AY.119	0.000106
ORF7a	94	Q94X	Caa	Taa	3	3	AY.120.1	0.000963
ORF7a	94	Q94del	CAA	---	3	3	AY.20	0.000117
ORF7a	94	Q94L	cAa	cTa	3	3	AY.22	0.006276
ORF7a	94	Q94X	Caa	Taa	3	3	AY.23	0.000209
ORF7a	94	Q94K	Caa	Aaa	3	3	AY.3.1	0.000256
ORF7a	94	Q94H	caA	caC	3	3	AY.4.2	0.000065
ORF7a	94	Q94del	CAA	---	3	3	AY.4.5	0.000322
ORF7a	94	Q94K	Caa	Aaa	3	3	AY.42	0.000121
ORF7a	94	Q94P	cAa	cCa	3	3	AY.43	0.000013
ORF7a	94	Q94del	CAA	---	3	3	AY.46.4	0.000494
ORF7a	94	Q94del	CAA	---	3	3	AY.47	0.000093
ORF7a	94	Q94X	Caa	Taa	3	3	AY.50	0.002398
ORF7a	94	Q94H	caA	caC	2	3	AY.61	0.00021
ORF7a	94	Q94H	caA	caT	1	3	AY.61	0.000105
ORF7a	94	Q94H	caA	caC	3	3	AY.9.2	0.00011
ORF7a	94	Q94H	caA	caC	3	3	AY.95	0.002283
ORF7a	94	Q94H	caA	caC	2	3	AY.98	0.000158
ORF7a	94	Q94H	caA	caT	1	3	AY.98	0.000079
ORF7a	94	Q94K	Caa	Aaa	3	3	AY.98.1	0.000145
ORF7a	94	Q94L	cAa	cTa	3	3	AY.99.2	0.000276
ORF7a	94	Q94X	Caa	Taa	3	3	AY.99.2	0.000276
ORF7a	94	Q94N	CaA	AaT	3	3	B.1.1	0.000054
ORF7a	94	Q94X	Caa	Taa	3	3	B.1.1.1	0.00098
ORF7a	94	Q94del	CAA	---	3	3	B.1.1.269	0.00406
ORF7a	94	Q94K	Caa	Aaa	3	3	B.1.1.506	0.111111
ORF7a	94	Q94K	Caa	Aaa	3	3	B.1.1.519	0.000119
ORF7a	94	Q94L	cAa	cTa	3	3	B.1.1.519	0.000119
ORF7a	94	Q94X	Caa	Taa	3	3	B.1.177.81	0.000568
ORF7a	94	Q94L	cAa	cTa	3	3	B.1.2	0.000026
ORF7a	94	Q94X	Caa	Taa	3	3	B.1.232	0.001612
ORF7a	94	Q94H	caA	caC	3	3	B.1.232	0.001612
ORF7a	94	Q94X	Caa	Taa	3	3	B.1.234	0.000396
ORF7a	94	Q94R	cAa	cGa	3	3	B.1.243	0.000209
ORF7a	94	Q94P	cAa	cCa	3	3	B.1.325	0.02069
ORF7a	94	Q94del	CAA	---	3	3	B.1.36	0.000438
ORF7a	94	Q94H	caA	caC	3	3	B.1.36.8	0.003
ORF7a	94	Q94del	CAA	---	3	3	B.1.427	0.000151
ORF7a	94	Q94del	CAA	---	3	3	B.1.429	0.000071
ORF7a	94	Q94del	CAA	---	3	3	B.1.575	0.00091
ORF7a	94	Q94E	Caa	Gaa	3	3	B.1.617.2	0.000011
ORF7a	94	Q94del	CAA	---	3	3	B.1.626	0.017143
ORF7a	94	Q94H	caA	caC	3	3	B.1.83	0.046154
ORF7a	94	Q94H	caA	caC	3	3	B.31	0.011194
ORF7a	94	Q94X	Caa	Taa	3	3	C.32	0.069767
ORF7a	94	Q94K	Caa	Aaa	3	3	Q.3	0.000435
ORF7a	94	Q94X	Caa	Taa	3	3	Q.3	0.000435
ORF7a	94	Q94del	CAA	---	2	2		0.111111
ORF7a	94	Q94del	CAA	---	2	2	A	0.000774
ORF7a	94	Q94K	Caa	Aaa	2	2	A	0.000774
ORF7a	94	Q94del	CAA	---	2	2	A.28	0.005291
ORF7a	94	Q94V	CAa	GTa	2	2	All	0
ORF7a	94	Q94X	Caa	Taa	2	2	AU.2	0.004843
ORF7a	94	Q94del1	caA	ca-	2	2	AY.103	0.000012
ORF7a	94	Q94X	Caa	Taa	2	2	AY.106	0.00067
ORF7a	94	Q94del	CAA	---	2	2	AY.108	0.002205
ORF7a	94	Q94del	CAA	---	2	2	AY.110	0.000225
ORF7a	94	Q94X	Caa	Taa	2	2	AY.114	0.000462
ORF7a	94	Q94del	CAA	---	2	2	AY.114	0.000462
ORF7a	94	Q94X	Caa	Taa	2	2	AY.116	0.000574
ORF7a	94	Q94X	Caa	Taa	2	2	AY.117	0.000169
ORF7a	94	Q94H	caA	caC	2	2	AY.118	0.000125
ORF7a	94	Q94X	Caa	Taa	2	2	AY.118	0.000125
ORF7a	94	Q94H	caA	caC	2	2	AY.12	0.000632
ORF7a	94	Q94del	CAA	---	2	2	AY.12	0.000632
ORF7a	94	Q94H	caA	caC	2	2	AY.120	0.000074
ORF7a	94	Q94K	Caa	Aaa	2	2	AY.120	0.000074
ORF7a	94	Q94L	cAa	cTa	2	2	AY.121	0.000271
ORF7a	94	Q94L	cAa	cTa	2	2	AY.16	0.000759
ORF7a	94	Q94L	cAa	cTa	2	2	AY.20	0.000078
ORF7a	94	Q94K	Caa	Aaa	2	2	AY.23	0.000139
ORF7a	94	Q94del	CAA	---	2	2	AY.24	0.000862
ORF7a	94	Q94R	cAa	cGa	2	2	AY.3	0.00002
ORF7a	94	Q94del	CAA	---	2	2	AY.34	0.000194
ORF7a	94	Q94X	Caa	Taa	2	2	AY.35	0.000466
ORF7a	94	Q94del	CAA	---	2	2	AY.36	0.000296
ORF7a	94	Q94H	caA	caC	2	2	AY.39	0.000049
ORF7a	94	Q94K	Caa	Aaa	2	2	AY.39.1	0.000079
ORF7a	94	Q94E	Caa	Gaa	2	2	AY.39.1	0.000079
ORF7a	94	Q94P	cAa	cCa	2	2	AY.4	0.000003
ORF7a	94	Q94X	Caa	Taa	2	2	AY.4.5	0.000215
ORF7a	94	Q94X	Caa	Taa	2	2	AY.45	0.000243
ORF7a	94	Q94del	CAA	---	2	2	AY.45	0.000243
ORF7a	94	Q94H	caA	caC	1	2	AY.46	0.000104
ORF7a	94	Q94H	caA	caT	1	2	AY.46	0.000104
ORF7a	94	Q94L	cAa	cTa	1	2	AY.46	0.000104
ORF7a	94	Q94L	cAA	cTT	1	2	AY.46	0.000104
ORF7a	94	Q94K	Caa	Aaa	2	2	AY.46.6	0.000144
ORF7a	94	Q94H	caA	caT	1	2	AY.47	0.000031
ORF7a	94	Q94H	caA	caC	1	2	AY.47	0.000031
ORF7a	94	Q94L	cAa	cTa	2	2	AY.48	0.00093
ORF7a	94	Q94R	cAa	cGa	2	2	AY.5	0.000041
ORF7a	94	Q94del	CAA	---	2	2	AY.5	0.000041
ORF7a	94	Q94K	Caa	Aaa	2	2	AY.5.4	0.000553
ORF7a	94	Q94H	caA	caC	2	2	AY.54	0.000191
ORF7a	94	Q94H	caA	caC	2	2	AY.68	0.000547
ORF7a	94	Q94del	CAA	---	2	2	AY.9.1	0.000167
ORF7a	94	Q94K	Caa	Aaa	2	2	AY.9.2	0.000073
ORF7a	94	Q94del	CAA	---	2	2	AY.9.2	0.000073
ORF7a	94	Q94H	caA	caC	2	2	AY.91	0.001461
ORF7a	94	Q94X	Caa	Taa	2	2	AY.98	0.000158
ORF7a	94	Q94del	CAA	---	2	2	AY.99	0.002099
ORF7a	94	Q94H	caA	caC	2	2	B	0.000256
ORF7a	94	Q94del	CAA	---	2	2	B	0.000256
ORF7a	94	Q94del	CAA	---	2	2	B.1.1.121	0.004854
ORF7a	94	Q94H	caA	caC	2	2	B.1.1.157	0.001826
ORF7a	94	Q94R	cAa	cGa	2	2	B.1.1.163	0.015267
ORF7a	94	Q94K	Caa	Aaa	2	2	B.1.1.164	0.010309
ORF7a	94	Q94Q	caA	caG	2	2	B.1.1.273	0.013514
ORF7a	94	Q94L	cAa	cTa	2	2	B.1.1.28	0.000622
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.1.28	0.000622
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.1.294	0.002532
ORF7a	94	Q94K	Caa	Aaa	2	2	B.1.1.312	0.003824
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.1.33	0.000842
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.1.354	0.008772
ORF7a	94	Q94L	cAa	cTa	2	2	B.1.1.485	0.033333
ORF7a	94	Q94R	cAa	cGa	2	2	B.1.1.519	0.000079
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.128	0.001271
ORF7a	94	Q94R	cAa	cGa	2	2	B.1.160	0.000062
ORF7a	94	Q94L	cAA	cTG	2	2	B.1.160	0.000062
ORF7a	94	Q94R	cAa	cGa	1	2	B.1.177	0.000013
ORF7a	94	Q94R	cAA	cGG	1	2	B.1.177	0.000013
ORF7a	94	Q94del	CAA	---	2	2	B.1.177.15	0.001262
ORF7a	94	Q94H	caA	caC	2	2	B.1.177.60	0.000437
ORF7a	94	Q94H	caA	caC	2	2	B.1.177.86	0.000367
ORF7a	94	Q94del	CAA	---	2	2	B.1.177.86	0.000367
ORF7a	94	Q94del2	cAA	c--	1	2	B.1.2	0.000009
ORF7a	94	Q94del2	CAA	--N	1	2	B.1.2	0.000009
ORF7a	94	Q94del	CAA	---	2	2	B.1.214.2	0.001199
ORF7a	94	Q94H	caA	caC	2	2	B.1.234	0.000264
ORF7a	94	Q94H	caA	caC	2	2	B.1.241	0.001623
ORF7a	94	Q94K	Caa	Aaa	2	2	B.1.241	0.001623
ORF7a	94	Q94del	CAA	---	2	2	B.1.243	0.000139
ORF7a	94	Q94del	CAA	---	2	2	B.1.258.11	0.000793
ORF7a	94	Q94del	CAA	---	2	2	B.1.350	0.005865
ORF7a	94	Q94N	CaA	AaT	2	2	B.1.351	0.000059
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.36.1	0.002281
ORF7a	94	Q94N	CaA	AaT	2	2	B.1.36.1	0.002281
ORF7a	94	Q94H	caA	caC	2	2	B.1.36.19	0.018519
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.396	0.001411
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.416.1	0.003125
ORF7a	94	Q94P	cAa	cCa	2	2	B.1.429	0.000047
ORF7a	94	Q94H	caA	caC	1	2	B.1.429	0.000024
ORF7a	94	Q94H	caA	caT	1	2	B.1.429	0.000024
ORF7a	94	Q94H	caA	caT	2	2	B.1.459	0.008163
ORF7a	94	Q94K	Caa	Aaa	2	2	B.1.486	0.222222
ORF7a	94	Q94H	caA	caC	2	2	B.1.517	0.000854
ORF7a	94	Q94del1	caA	ca-	2	2	B.1.526	0.000047
ORF7a	94	Q94H	caA	caC	2	2	B.1.551	0.002581
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.595	0.000522
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.596	0.000174
ORF7a	94	Q94H	caA	caC	2	2	B.1.596	0.000174
ORF7a	94	Q94del2	cAA	c--	2	2	B.1.617.2	0.000008
ORF7a	94	Q94H	caA	caC	2	2	B.1.621.1	0.001012
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.623	0.001073
ORF7a	94	Q94X	Caa	Taa	2	2	B.1.628	0.000705
ORF7a	94	Q94H	caA	caC	2	2	B.6.6	0.001778
ORF7a	94	Q94H	caA	caC	2	2	C.36.3	0.001134
ORF7a	94	Q94R	cAa	cGa	2	2	P.1.15	0.000465
ORF7a	94	Q94H	caA	caC	2	2	P.1.17	0.000324
ORF7a	94	Q94E	Caa	Gaa	2	2	P.1.2	0.002312
ORF7a	94	Q94H	caA	caC	2	2	P.2	0.000373
ORF7a	94	Q94L	cAa	cTa	2	2	Q.1	0.000253
ORF7a	94	Q94X	Caa	Taa	2	2	Q.1	0.000253
ORF7a	94	Q94del	CAA	---	1	1	A.1	0.000282
ORF7a	94	Q94H	caA	caC	1	1	A.1	0.000282
ORF7a	94	Q94H	caA	caC	1	1	A.2	0.000662
ORF7a	94	Q94del	CAA	---	1	1	A.2.2	0.001689
ORF7a	94	Q94X	Caa	Taa	1	1	A.2.4	0.003367
ORF7a	94	Q94X	Caa	Taa	1	1	A.2.5	0.000499
ORF7a	94	Q94H	caA	caT	1	1	A.2.5	0.000499
ORF7a	94	Q94K	Caa	Aaa	1	1	A.2.5.2	0.001572
ORF7a	94	Q94X	Caa	Taa	1	1	A.21	0.00277
ORF7a	94	Q94K	Caa	Aaa	1	1	A.23.1	0.000704
ORF7a	94	Q94K	Caa	Aaa	1	1	AE.8	0.000489
ORF7a	94	Q94R	cAa	cGa	1	1	AE.8	0.000489
ORF7a	94	Q94D	CaA	GaT	1	1	All	0
ORF7a	94	Q94Y	CaA	TaT	1	1	All	0
ORF7a	94	Q94G	CAa	GGa	1	1	All	0
ORF7a	94	Q94X	Caa	Taa	1	1	AT.1	0.005128
ORF7a	94	Q94R	cAa	cGa	1	1	AT.1	0.005128
ORF7a	94	Q94K	Caa	Aaa	1	1	AU.3	0.00211
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.1	0.000396
ORF7a	94	Q94H	caA	caC	1	1	AY.10	0.00053
ORF7a	94	Q94L	cAa	cTa	1	1	AY.100	0.000046
ORF7a	94	Q94L	cAa	cTa	1	1	AY.102	0.000027
ORF7a	94	Q94Q	caA	caG	1	1	AY.103	0.000006
ORF7a	94	Q94X	Caa	Taa	1	1	AY.105	0.000643
ORF7a	94	Q94E	Caa	Gaa	1	1	AY.106	0.000335
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.109	0.00074
ORF7a	94	Q94H	caA	caT	1	1	AY.110	0.000113
ORF7a	94	Q94Q	caA	caG	1	1	AY.110	0.000113
ORF7a	94	Q94L	cAa	cTa	1	1	AY.113	0.000142
ORF7a	94	Q94del	CAA	---	1	1	AY.113	0.000142
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.113	0.000142
ORF7a	94	Q94del	CAA	---	1	1	AY.116	0.000287
ORF7a	94	Q94del	CAA	---	1	1	AY.116.1	0.000311
ORF7a	94	Q94H	caA	caC	1	1	AY.117	0.000085
ORF7a	94	Q94L	cAa	cTa	1	1	AY.118	0.000063
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.120.1	0.000321
ORF7a	94	Q94del	CAA	---	1	1	AY.13	0.000161
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.13	0.000161
ORF7a	94	Q94del	CAA	---	1	1	AY.14	0.000088
ORF7a	94	Q94del	CAA	---	1	1	AY.19	0.00114
ORF7a	94	Q94Q	caA	caG	1	1	AY.23	0.00007
ORF7a	94	Q94H	caA	caC	1	1	AY.23	0.00007
ORF7a	94	Q94Q	caA	caG	1	1	AY.25	0.000006
ORF7a	94	Q94del1	cAa	c-a	1	1	AY.25	0.000006
ORF7a	94	Q94L	cAa	cTa	1	1	AY.26	0.000028
ORF7a	94	Q94Q	caA	caG	1	1	AY.26	0.000028
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.27	0.000065
ORF7a	94	Q94Q	caA	caG	1	1	AY.27	0.000065
ORF7a	94	Q94Q	caA	caG	1	1	AY.29	0.000016
ORF7a	94	Q94del	CAA	---	1	1	AY.29.1	0.000221
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.29.1	0.000221
ORF7a	94	Q94L	cAa	cTa	1	1	AY.3	0.00001
ORF7a	94	Q94X	Caa	Taa	1	1	AY.30	0.000396
ORF7a	94	Q94R	CAa	AGa	1	1	AY.30	0.000396
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.32	0.000532
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.33	0.000067
ORF7a	94	Q94H	caA	caC	1	1	AY.34	0.000097
ORF7a	94	Q94H	caA	caT	1	1	AY.34.1	0.00051
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.36	0.000148
ORF7a	94	Q94X	Caa	Taa	1	1	AY.38	0.000499
ORF7a	94	Q94L	cAa	cTa	1	1	AY.4.2	0.000022
ORF7a	94	Q94X	Caa	Taa	1	1	AY.4.2.1	0.000149
ORF7a	94	Q94H	caA	caC	1	1	AY.4.4	0.000409
ORF7a	94	Q94H	caA	caC	1	1	AY.4.5	0.000107
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.4.5	0.000107
ORF7a	94	Q94X	Caa	Taa	1	1	AY.40	0.000964
ORF7a	94	Q94P	cAa	cCa	1	1	AY.42	0.00004
ORF7a	94	Q94Q	caA	caG	1	1	AY.43	0.000004
ORF7a	94	Q94del1	caA	ca-	1	1	AY.43	0.000004
ORF7a	94	Q94I	CAa	ATa	1	1	AY.44	0.000006
ORF7a	94	Q94Q	caA	caG	1	1	AY.44	0.000006
ORF7a	94	Q94E	Caa	Gaa	1	1	AY.44	0.000006
ORF7a	94	Q94del1	cAa	c-a	1	1	AY.44	0.000006
ORF7a	94	Q94Q	caA	caG	1	1	AY.46	0.000104
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.46.4	0.000165
ORF7a	94	Q94H	caA	caC	1	1	AY.46.5	0.000198
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.46.5	0.000198
ORF7a	94	Q94X	Caa	Taa	1	1	AY.46.5	0.000198
ORF7a	94	Q94H	caA	caC	1	1	AY.46.6	0.000072
ORF7a	94	Q94del1	cAa	c-a	1	1	AY.47	0.000031
ORF7a	94	Q94E	Caa	Gaa	1	1	AY.47	0.000031
ORF7a	94	Q94V	CAa	GTa	1	1	AY.47	0.000031
ORF7a	94	Q94H	caA	caC	1	1	AY.48	0.000465
ORF7a	94	Q94L	cAa	cTa	1	1	AY.5.3	0.000337
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.52	0.000814
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.53	0.000288
ORF7a	94	Q94del	CAA	---	1	1	AY.53	0.000288
ORF7a	94	Q94P	cAa	cCa	1	1	AY.54	0.000095
ORF7a	94	Q94X	Caa	Taa	1	1	AY.54	0.000095
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.56	0.001605
ORF7a	94	Q94X	Caa	Taa	1	1	AY.58	0.000907
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.6	0.000041
ORF7a	94	Q94R	cAa	cGa	1	1	AY.61	0.000105
ORF7a	94	Q94del	CAA	---	1	1	AY.61	0.000105
ORF7a	94	Q94X	Caa	Taa	1	1	AY.62	0.000436
ORF7a	94	Q94R	cAa	cGa	1	1	AY.63	0.000387
ORF7a	94	Q94X	Caa	Taa	1	1	AY.65	0.000533
ORF7a	94	Q94L	cAa	cTa	1	1	AY.67	0.000464
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.67	0.000464
ORF7a	94	Q94del	CAA	---	1	1	AY.68	0.000274
ORF7a	94	Q94del	CAA	---	1	1	AY.69	0.000187
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.7	0.000196
ORF7a	94	Q94del	CAA	---	1	1	AY.7.1	0.000113
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.7.2	0.000559
ORF7a	94	Q94H	caA	caC	1	1	AY.7.2	0.000559
ORF7a	94	Q94Q	caA	caG	1	1	AY.70	0.000209
ORF7a	94	Q94H	caA	caC	1	1	AY.70	0.000209
ORF7a	94	Q94del	CAA	---	1	1	AY.71	0.000475
ORF7a	94	Q94E	Caa	Gaa	1	1	AY.74	0.000116
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.75	0.000056
ORF7a	94	Q94H	caA	caC	1	1	AY.75	0.000056
ORF7a	94	Q94del	CAA	---	1	1	AY.75	0.000056
ORF7a	94	Q94Q	caA	caG	1	1	AY.75.1	0.00018
ORF7a	94	Q94H	caA	caC	1	1	AY.75.1	0.00018
ORF7a	94	Q94X	Caa	Taa	1	1	AY.75.1	0.00018
ORF7a	94	Q94X	Caa	Taa	1	1	AY.80	0.001129
ORF7a	94	Q94H	caA	caC	1	1	AY.81	0.001992
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.84	0.000437
ORF7a	94	Q94X	Caa	Taa	1	1	AY.84	0.000437
ORF7a	94	Q94H	caA	caC	1	1	AY.84	0.000437
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.85	0.000427
ORF7a	94	Q94H	caA	caC	1	1	AY.86	0.00083
ORF7a	94	Q94L	cAa	cTa	1	1	AY.9.2	0.000037
ORF7a	94	Q94X	Caa	Taa	1	1	AY.90	0.000684
ORF7a	94	Q94del	CAA	---	1	1	AY.91	0.00073
ORF7a	94	Q94X	Caa	Taa	1	1	AY.92	0.000287
ORF7a	94	Q94X	Caa	Taa	1	1	AY.94	0.000443
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.95	0.000761
ORF7a	94	Q94del	CAA	---	1	1	AY.98	0.000079
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.98	0.000079
ORF7a	94	Q94L	cAa	cTa	1	1	AY.98.1	0.000048
ORF7a	94	Q94H	caA	caC	1	1	AY.98.1	0.000048
ORF7a	94	Q94K	Caa	Aaa	1	1	AY.99.2	0.000092
ORF7a	94	Q94del	CAA	---	1	1	AZ.2	0.000821
ORF7a	94	Q94H	caA	caC	1	1	AZ.2	0.000821
ORF7a	94	Q94K	Caa	Aaa	1	1	B	0.000128
ORF7a	94	Q94X	Caa	Taa	1	1	B	0.000128
ORF7a	94	Q94R	cAa	cGa	1	1	B	0.000128
ORF7a	94	Q94G	CAa	GGa	1	1	B.1	0.000009
ORF7a	94	Q94N	CaA	AaT	1	1	B.1	0.000009
ORF7a	94	Q94P	cAa	cCa	1	1	B.1	0.000009
ORF7a	94	Q94R	cAa	cGa	1	1	B.1	0.000009
ORF7a	94	Q94P	cAA	cCT	1	1	B.1.1	0.000018
ORF7a	94	Q94Q	caA	caG	1	1	B.1.1.1	0.000327
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.117	0.009709
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.1.153	0.001095
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.1.165	0.015385
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.170	0.001247
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.174	0.003378
ORF7a	94	Q94N	CaA	AaT	1	1	B.1.1.189	0.001513
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.192	0.002309
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.200	0.007463
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.216	0.00089
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.216	0.00089
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.1.222	0.000204
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.222	0.000204
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.231	0.003096
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.232	0.001815
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.241	0.00207
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.1.25	0.000569
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.25	0.000569
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.258	0.003257
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.265	0.003155
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.277	0.000759
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.28	0.000311
ORF7a	94	Q94N	CaA	AaT	1	1	B.1.1.282	0.011628
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.294	0.001266
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.305	0.003861
ORF7a	94	Q94E	CaA	GaG	1	1	B.1.1.305	0.003861
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.306	0.000438
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.311	0.000358
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.311	0.000358
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.317	0.000412
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.1.318	0.000302
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.318	0.000302
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.33	0.000421
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.37	0.000193
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.372	0.000689
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.1.375	0.011905
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.398	0.003226
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.1.406	0.006494
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.411	0.014706
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.1.411	0.014706
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.423	0.0625
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.442	0.018519
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.448	0.002033
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.462	0.008621
ORF7a	94	Q94Q	caA	caG	1	1	B.1.1.518	0.006329
ORF7a	94	Q94P	cAA	cCT	1	1	B.1.1.519	0.00004
ORF7a	94	Q94H	caA	caC	1	1	B.1.1.523	0.001563
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.63	0.000386
ORF7a	94	Q94Y	CaA	TaT	1	1	B.1.1.7	0.000001
ORF7a	94	Q94del2	CAA	--N	1	1	B.1.1.7	0.000001
ORF7a	94	Q94N	CaA	AaC	1	1	B.1.1.7	0.000001
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.1.70	0.000341
ORF7a	94	Q94del	CAA	---	1	1	B.1.1.70	0.000341
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.1.98	0.018519
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.110.3	0.000718
ORF7a	94	Q94del	CAA	---	1	1	B.1.115	0.021739
ORF7a	94	Q94R	cAa	cGa	1	1	B.1.160.14	0.002119
ORF7a	94	Q94H	caA	caC	1	1	B.1.160.29	0.004219
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.162	0.005025
ORF7a	94	Q94N	CaA	AaT	1	1	B.1.177	0.000013
ORF7a	94	Q94Q	caA	caG	1	1	B.1.177	0.000013
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.12	0.000152
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.2	0.004545
ORF7a	94	Q94del	CAA	---	1	1	B.1.177.21	0.000076
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.21	0.000076
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.23	0.003236
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.4	0.000211
ORF7a	94	Q94R	cAa	cGa	1	1	B.1.177.43	0.001477
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.44	0.000519
ORF7a	94	Q94H	caA	caC	1	1	B.1.177.5	0.001242
ORF7a	94	Q94del	CAA	---	1	1	B.1.177.50	0.004695
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.52	0.001757
ORF7a	94	Q94del	CAA	---	1	1	B.1.177.57	0.000281
ORF7a	94	Q94del	CAA	---	1	1	B.1.177.60	0.000218
ORF7a	94	Q94del	CAA	---	1	1	B.1.177.62	0.001192
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.177.63	0.002703
ORF7a	94	Q94H	caA	caC	1	1	B.1.177.65	0.000665
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.177.65	0.000665
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.65	0.000665
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.177.7	0.000165
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.177.7	0.000165
ORF7a	94	Q94Q	caA	caG	1	1	B.1.177.78	0.009709
ORF7a	94	Q94H	caA	caC	1	1	B.1.177.79	0.002342
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.177.8	0.000752
ORF7a	94	Q94del	CAA	---	1	1	B.1.177.81	0.000189
ORF7a	94	Q94Q	caA	caG	1	1	B.1.2	0.000009
ORF7a	94	Q94E	Caa	Gaa	1	1	B.1.2	0.000009
ORF7a	94	Q94P	cAA	cCT	1	1	B.1.2	0.000009
ORF7a	94	Q94del1	caA	ca-	1	1	B.1.2	0.000009
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.206	0.000816
ORF7a	94	Q94del	CAA	---	1	1	B.1.23	0.006061
ORF7a	94	Q94del	CAA	---	1	1	B.1.240	0.000216
ORF7a	94	Q94P	cAA	cCT	1	1	B.1.240	0.000216
ORF7a	94	Q94N	CaA	AaT	1	1	B.1.242	0.018868
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.243	0.00007
ORF7a	94	Q94H	caA	caC	1	1	B.1.256	0.017241
ORF7a	94	Q94del	CAA	---	1	1	B.1.258	0.000067
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.258.17	0.000104
ORF7a	94	Q94del	CAA	---	1	1	B.1.258.17	0.000104
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.258.7	0.001912
ORF7a	94	Q94D	CaA	GaT	1	1	B.1.258.9	0.005
ORF7a	94	Q94del	CAA	---	1	1	B.1.265	0.001271
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.293	0.0125
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.301	0.005917
ORF7a	94	Q94del	CAA	---	1	1	B.1.319	0.003049
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.343	0.020833
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.351	0.00003
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.351	0.00003
ORF7a	94	Q94del	CAA	---	1	1	B.1.351.2	0.000303
ORF7a	94	Q94H	caA	caC	1	1	B.1.36	0.000146
ORF7a	94	Q94N	CaA	AaT	1	1	B.1.36	0.000146
ORF7a	94	Q94H	caA	caT	1	1	B.1.36.1	0.00114
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.36.25	0.002208
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.36.36	0.000602
ORF7a	94	Q94H	caA	caC	1	1	B.1.36.37	0.002778
ORF7a	94	Q94H	caA	caC	1	1	B.1.36.38	0.001642
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.36.38	0.001642
ORF7a	94	Q94Q	caA	caG	1	1	B.1.36.8	0.001
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.36.8	0.001
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.369	0.000285
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.37	0.014706
ORF7a	94	Q94del	CAA	---	1	1	B.1.371	0.001122
ORF7a	94	Q94del	CAA	---	1	1	B.1.375	0.00082
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.377	0.004566
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.380	0.006623
ORF7a	94	Q94H	caA	caC	1	1	B.1.396	0.000706
ORF7a	94	Q94H	caA	caC	1	1	B.1.400	0.000429
ORF7a	94	Q94H	caA	caC	1	1	B.1.416	0.001269
ORF7a	94	Q94H	caA	caC	1	1	B.1.416.1	0.001563
ORF7a	94	Q94R	cAa	cGa	1	1	B.1.422	0.000812
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.422	0.000812
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.427	0.00005
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.429	0.000024
ORF7a	94	Q94N	CaA	AaT	1	1	B.1.438	0.006536
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.438.1	0.000107
ORF7a	94	Q94H	caA	caC	1	1	B.1.438.1	0.000107
ORF7a	94	Q94del	CAA	---	1	1	B.1.459	0.004082
ORF7a	94	Q94E	Caa	Gaa	1	1	B.1.462	0.007246
ORF7a	94	Q94E	Caa	Gaa	1	1	B.1.466.2	0.000391
ORF7a	94	Q94del	CAA	---	1	1	B.1.468	0.005714
ORF7a	94	Q94del	CAA	---	1	1	B.1.470	0.001404
ORF7a	94	Q94R	cAa	cGa	1	1	B.1.497	0.000315
ORF7a	94	Q94H	caA	caC	1	1	B.1.516	0.001957
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.524	0.001406
ORF7a	94	Q94H	caA	caT	1	1	B.1.525	0.000113
ORF7a	94	Q94del	CAA	---	1	1	B.1.527	0.003704
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.533	0.009615
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.551	0.00129
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.558	0.004566
ORF7a	94	Q94H	caA	caC	1	1	B.1.564	0.000426
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.565	0.00081
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.575.1	0.002439
ORF7a	94	Q94del	CAA	---	1	1	B.1.577	0.000687
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.582	0.000491
ORF7a	94	Q94del	CAA	---	1	1	B.1.582	0.000491
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.590	0.004545
ORF7a	94	Q94Q	caA	caG	1	1	B.1.590	0.004545
ORF7a	94	Q94del1	cAa	c-a	1	1	B.1.595	0.000261
ORF7a	94	Q94H	caA	caC	1	1	B.1.595.1	0.005848
ORF7a	94	Q94del1	cAa	c-a	1	1	B.1.596	0.000087
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.596	0.000087
ORF7a	94	Q94del	CAA	---	1	1	B.1.596	0.000087
ORF7a	94	Q94H	caA	caT	1	1	B.1.606	0.006024
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.609	0.000479
ORF7a	94	Q94L	cAa	cTa	1	1	B.1.617.1	0.000129
ORF7a	94	Q94del	CAA	---	1	1	B.1.617.1	0.000129
ORF7a	94	Q94H	caA	caC	1	1	B.1.617.1	0.000129
ORF7a	94	Q94Q	caA	caG	1	1	B.1.617.2	0.000004
ORF7a	94	Q94V	CAa	GTa	1	1	B.1.617.2	0.000004
ORF7a	94	Q94I	CAA	ATT	1	1	B.1.617.3	0.002985
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.621	0.000089
ORF7a	94	Q94Q	caA	caG	1	1	B.1.621	0.000089
ORF7a	94	Q94E	CaA	GaG	1	1	B.1.621	0.000089
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.621.1	0.000506
ORF7a	94	Q94X	Caa	Taa	1	1	B.1.621.1	0.000506
ORF7a	94	Q94del	CAA	---	1	1	B.1.621.1	0.000506
ORF7a	94	Q94K	Caa	Aaa	1	1	B.1.623	0.000536
ORF7a	94	Q94H	caA	caC	1	1	B.1.627	0.00202
ORF7a	94	Q94del	CAA	---	1	1	B.1.638	0.052632
ORF7a	94	Q94del	CAA	---	1	1	B.1.9.1	0.032258
ORF7a	94	Q94del	CAA	---	1	1	B.1.9.5	0.005682
ORF7a	94	Q94del	CAA	---	1	1	B.1.93	0.000934
ORF7a	94	Q94R	cAa	cGa	1	1	B.1.93	0.000934
ORF7a	94	Q94H	caA	caC	1	1	B.3.1	0.001658
ORF7a	94	Q94H	caA	caC	1	1	B.39	0.002331
ORF7a	94	Q94X	Caa	Taa	1	1	B.4.7	0.010101
ORF7a	94	Q94K	Caa	Aaa	1	1	C.30	0.001727
ORF7a	94	Q94K	Caa	Aaa	1	1	C.35	0.000774
ORF7a	94	Q94X	Caa	Taa	1	1	C.36	0.000911
ORF7a	94	Q94P	cAa	cCa	1	1	C.37	0.000116
ORF7a	94	Q94K	Caa	Aaa	1	1	D.2	0.000075
ORF7a	94	Q94H	caA	caC	1	1	D.2	0.000075
ORF7a	94	Q94H	caA	caC	1	1	N.9	0.005952
ORF7a	94	Q94del1	Caa	-aa	1	1	P.1	0.000016
ORF7a	94	Q94L	cAa	cTa	1	1	P.1	0.000016
ORF7a	94	Q94R	cAa	cGa	1	1	P.1	0.000016
ORF7a	94	Q94H	caA	caC	1	1	P.1.1	0.000318
ORF7a	94	Q94del	CAA	---	1	1	P.1.1	0.000318
ORF7a	94	Q94K	Caa	Aaa	1	1	P.1.1	0.000318
ORF7a	94	Q94del	CAA	---	1	1	P.1.10	0.000269
ORF7a	94	Q94X	Caa	Taa	1	1	P.1.12	0.000484
ORF7a	94	Q94del	CAA	---	1	1	P.1.12	0.000484
ORF7a	94	Q94del	CAA	---	1	1	P.1.14	0.000048
ORF7a	94	Q94X	Caa	Taa	1	1	P.1.15	0.000232
ORF7a	94	Q94del	CAA	---	1	1	P.1.16	0.000374
ORF7a	94	Q94X	Caa	Taa	1	1	P.1.17	0.000162
ORF7a	94	Q94del	CAA	---	1	1	P.1.3	0.034483
ORF7a	94	Q94del	CAA	---	1	1	P.1.4	0.000977
ORF7a	94	Q94Q	caA	caG	1	1	P.1.7	0.000319
ORF7a	94	Q94Q	caA	caG	1	1	P.1.8	0.004785
ORF7a	94	Q94del	CAA	---	1	1	P.2	0.000187
ORF7a	94	Q94X	Caa	Taa	1	1	P.2	0.000187
ORF7a	94	Q94X	Caa	Taa	1	1	P.4	0.003802
ORF7a	94	Q94del	CAA	---	1	1	Q.7	0.001111
ORF7a	94	Q94H	caA	caC	1	1	Q.8	0.000165
ORF7a	94	Q94K	Caa	Aaa	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.