CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 86 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a86L86LsynctGctT791115300.19340227649-27651

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a86L86LctGctT15307911All0.000293
ORF7a86L86LctGctT4554130AY.40.000708
ORF7a86L86LctGctT441074AY.30.000438
ORF7a86L86LctGctT102381B.1.1.70.000091
ORF7a86L86LctGctT64257B.1.617.20.000241
ORF7a86L86LctGctT149151C.370.017293
ORF7a86L86LctGctT46137AY.430.000204
ORF7a86L86LctGctT9699AY.9.10.008038
ORF7a86L86LctGctT3897AY.250.000229
ORF7a86L86LctGctT1596AY.1030.000093
ORF7a86L86LctGctT4092B.1.20.000352
ORF7a86L86LctGctT1677AY.440.000097
ORF7a86L86LctGctT2374AY.1020.00061
ORF7a86L86LctGctT1560B.10.000137
ORF7a86L86LctGctT852P.1.150.001859
ORF7a86L86LctGctT3448AY.120.10.010915
ORF7a86L86LctGctT2542P.10.000394
ORF7a86L86LctGctT737B.1.1770.000092
ORF7a86L86LctGctT3636B.1.177.820.017184
ORF7a86L86LctGctT1634AY.4.20.000347
ORF7a86L86LctGctT1633B.1.10.00029
ORF7a86L86LctGctT3232B.1.160.130.888889
ORF7a86L86LctGctT330AY.260.000085
ORF7a86L86LctGctT130B.1.2580.000067
ORF7a86L86LctGctT328B.1.4270.000151
ORF7a86L86LctGctT726AY.290.00011
ORF7a86L86LctGctT124B.1.4290.000024
ORF7a86L86LctGctT2022AY.330.001336
ORF7a86L86LctGctT321AY.200.000117
ORF7a86L86LctGctT320AY.1190.000106
ORF7a86L86LctGctT617AY.1000.000276
ORF7a86L86LctGctT217AY.7.10.000225
ORF7a86L86LctGctT1417B.1.1.5190.000556
ORF7a86L86LctGctT217B.1.617.10.000258
ORF7a86L86LctGctT416AY.390.000099
ORF7a86L86LctGctT215AY.420.00008
ORF7a86L86LctGctT515AY.470.000156
ORF7a86L86LctGctT715B.1.3510.000208
ORF7a86L86LctGctT114AY.530.000288
ORF7a86L86LctGctT314AY.730.001996
ORF7a86L86LctGctT1314B.1.1.4340.004531
ORF7a86L86LctGctT514B.1.5260.000118
ORF7a86L86LctGctT1212B.1.1.4200.012072
ORF7a86L86LctGctT311AY.460.000312
ORF7a86L86LctGctT910AE.80.004401
ORF7a86L86LctGctT210AY.50.000041
ORF7a86L86LctGctT810AY.60.000329
ORF7a86L86LctGctT39AY.230.000209
ORF7a86L86LctGctT19AY.750.000056
ORF7a86L86LctGctT79AY.9.20.000257
ORF7a86L86LctGctT99B.1.1460.038136
ORF7a86L86LctGctT78AY.1210.000947
ORF7a86L86LctGctT18AY.720.001361
ORF7a86L86LctGctT58B.1.5960.000436
ORF7a86L86LctGctT57P.1.140.000239
ORF7a86L86LctGctT27P.20.000373
ORF7a86L86LctGctT16AY.920.000287
ORF7a86L86LctGctT66B.1.2400.001293
ORF7a86L86LctGctT35AY.1170.000254
ORF7a86L86LctGctT15AY.1180.000063
ORF7a86L86LctGctT25B.1.2340.000264
ORF7a86L86LctGctT45R.10.00036
ORF7a86L86LctGctT14AY.1160.000287
ORF7a86L86LctGctT24B.1.1600.000062
ORF7a86L86LctGctT23AY.1060.00067
ORF7a86L86LctGctT13AY.450.000122
ORF7a86L86LctGctT23AY.46.60.000144
ORF7a86L86LctGctT13AY.980.000079
ORF7a86L86LctGctT33B.1.2210.000213
ORF7a86L86LctGctT23B.1.6210.000177
ORF7a86L86LctGctT12AY.1200.000037
ORF7a86L86LctGctT12AY.5.40.000277
ORF7a86L86LctGctT12AY.610.000105
ORF7a86L86LctGctT22AY.620.000871
ORF7a86L86LctGctT12AY.850.000427
ORF7a86L86LctGctT22AY.98.10.000097
ORF7a86L86LctGctT22B.1.1.1890.003026
ORF7a86L86LctGctT12B.1.1.2220.000204
ORF7a86L86LctGctT22B.1.1.3720.001377
ORF7a86L86LctGctT12B.1.2320.000537
ORF7a86L86LctGctT12B.1.2430.00007
ORF7a86L86LctGctT22B.1.4040.002604
ORF7a86L86LctGctT22B.1.466.20.000782
ORF7a86L86LctGctT12B.1.5250.000113
ORF7a86L86LctGctT110.055556
ORF7a86L86LctGctT11AY.39.10.00004
ORF7a86L86LctGctT11AY.590.00053
ORF7a86L86LctGctT11AY.770.001127
ORF7a86L86LctGctT11B.1.1.3120.001912
ORF7a86L86LctGctT11B.1.1.3780.007299
ORF7a86L86LctGctT11B.1.177.70.000165
ORF7a86L86LctGctT11B.1.230.006061
ORF7a86L86LctGctT11B.1.360.000146
ORF7a86L86LctGctT11B.1.36.100.004785
ORF7a86L86LctGctT11B.1.36.220.001208
ORF7a86L86LctGctT11B.1.36.290.000517
ORF7a86L86LctGctT11B.1.3670.000792
ORF7a86L86LctGctT11B.1.4700.001404
ORF7a86L86LctGctT11B.1.4800.002488
ORF7a86L86LctGctT11B.1.4970.000315
ORF7a86L86LctGctT11B.1.5170.000427
ORF7a86L86LctGctT11B.1.5650.00081
ORF7a86L86LctGctT11B.1.6230.000536
ORF7a86L86LctGctT11C.37.10.002618
ORF7a86L86LctGctT11L.10.001905
ORF7a86L86LctGctT11P.70.004367
ORF7a86L86LctGctT11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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