CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 86 & Codon = ctA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a86L86LsynctGctA79112850.036025827649-27651

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a86L86LctGctA2857911All0.000055
ORF7a86L86LctGctA354130AY.40.000054
ORF7a86L86LctGctA631074AY.30.000627
ORF7a86L86LctGctA25381B.1.1.70.000022
ORF7a86L86LctGctA18257B.1.617.20.000068
ORF7a86L86LctGctA8137AY.430.000035
ORF7a86L86LctGctA199AY.9.10.000084
ORF7a86L86LctGctA297AY.250.000012
ORF7a86L86LctGctA496AY.1030.000025
ORF7a86L86LctGctA692B.1.20.000053
ORF7a86L86LctGctA277AY.440.000012
ORF7a86L86LctGctA574AY.1020.000133
ORF7a86L86LctGctA560B.10.000046
ORF7a86L86LctGctA342P.10.000047
ORF7a86L86LctGctA137B.1.1770.000013
ORF7a86L86LctGctA134AY.4.20.000022
ORF7a86L86LctGctA733B.1.10.000127
ORF7a86L86LctGctA430AY.260.000113
ORF7a86L86LctGctA2128B.1.4270.00106
ORF7a86L86LctGctA126AY.290.000016
ORF7a86L86LctGctA121AY.200.000039
ORF7a86L86LctGctA820AY.1190.000282
ORF7a86L86LctGctA117AY.1000.000046
ORF7a86L86LctGctA117AY.7.10.000113
ORF7a86L86LctGctA117B.1.1.5190.00004
ORF7a86L86LctGctA416AY.390.000099
ORF7a86L86LctGctA215B.1.3510.000059
ORF7a86L86LctGctA1314AY.530.003738
ORF7a86L86LctGctA114B.1.5260.000024
ORF7a86L86LctGctA110AE.80.000489
ORF7a86L86LctGctA110AY.50.000021
ORF7a86L86LctGctA19AY.230.00007
ORF7a86L86LctGctA19AY.9.20.000037
ORF7a86L86LctGctA18AY.3.10.000085
ORF7a86L86LctGctA18AY.720.001361
ORF7a86L86LctGctA17AY.4.50.000107
ORF7a86L86LctGctA16AY.920.000287
ORF7a86L86LctGctA15AY.840.000437
ORF7a86L86LctGctA35B.1.2340.000396
ORF7a86L86LctGctA15R.10.00009
ORF7a86L86LctGctA24AY.1160.000574
ORF7a86L86LctGctA13AY.130.000161
ORF7a86L86LctGctA13AY.450.000122
ORF7a86L86LctGctA13AY.46.60.000072
ORF7a86L86LctGctA13AY.75.10.00018
ORF7a86L86LctGctA13AY.980.000079
ORF7a86L86LctGctA33B.1.177.570.000843
ORF7a86L86LctGctA33B.1.3690.000856
ORF7a86L86LctGctA22AY.640.00119
ORF7a86L86LctGctA12AY.850.000427
ORF7a86L86LctGctA12B.1.258.170.000104
ORF7a86L86LctGctA12B.1.5750.000303
ORF7a86L86LctGctA11AY.1040.001984
ORF7a86L86LctGctA11AY.520.000814
ORF7a86L86LctGctA11AY.820.001357
ORF7a86L86LctGctA11AY.99.20.000092
ORF7a86L86LctGctA11B0.000128
ORF7a86L86LctGctA11B.1.1.520.012195
ORF7a86L86LctGctA11B.1.1470.000756
ORF7a86L86LctGctA11B.1.177.630.002703
ORF7a86L86LctGctA11B.1.2410.000812
ORF7a86L86LctGctA11B.1.36.170.000494

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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