CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 86 & Codon = cCg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a86L86PnonsyncTgcCg87860.98850627649-27651

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a86L86PcTgcCg8687All0.000016
ORF7a86L86PcTgcCg3636AY.4.20.000781
ORF7a86L86PcTgcCg99AY.1030.000056
ORF7a86L86PcTgcCg89B.1.1.70.000007
ORF7a86L86PcTgcCg66AY.40.000009
ORF7a86L86PcTgcCg55AY.430.000022
ORF7a86L86PcTgcCg33AY.30.00003
ORF7a86L86PcTgcCg22AY.250.000012
ORF7a86L86PcTgcCg22B.1.5880.00182
ORF7a86L86PcTgcCg22B.1.617.20.000008
ORF7a86L86PcTgcCg22P.10.000032
ORF7a86L86PcTgcCg11A0.000387
ORF7a86L86PcTgcCg11A.23.10.000704
ORF7a86L86PcTgcCg11AY.1190.000035
ORF7a86L86PcTgcCg11AY.1200.000037
ORF7a86L86PcTgcCg11AY.280.00189
ORF7a86L86PcTgcCg11AY.3.10.000085
ORF7a86L86PcTgcCg11AY.440.000006
ORF7a86L86PcTgcCg11B.1.4290.000024
ORF7a86L86PcTgcCg11B.1.4970.000315
ORF7a86L86PcTgcCg11B.1.5250.000113
ORF7a86L86PcTgcCg11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.