CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 86 & Codon = Ttg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a86L86LsynCtgTtg791160530.76513727649-27651

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a86L86LCtgTtg60537911All0.001158
ORF7a86L86LCtgTtg36354130AY.40.005658
ORF7a86L86LCtgTtg9641074AY.30.009588
ORF7a86L86LCtgTtg253381B.1.1.70.000226
ORF7a86L86LCtgTtg175257B.1.617.20.000659
ORF7a86L86LCtgTtg2151C.370.000232
ORF7a86L86LCtgTtg82137AY.430.000363
ORF7a86L86LCtgTtg299AY.9.10.000167
ORF7a86L86LCtgTtg5697AY.250.000337
ORF7a86L86LCtgTtg7796AY.1030.000478
ORF7a86L86LCtgTtg4692B.1.20.000405
ORF7a86L86LCtgTtg4477AY.440.000268
ORF7a86L86LCtgTtg4674AY.1020.00122
ORF7a86L86LCtgTtg4060B.10.000366
ORF7a86L86LCtgTtg4452P.1.150.010223
ORF7a86L86LCtgTtg4949AY.4.30.041246
ORF7a86L86LCtgTtg1448AY.120.10.004494
ORF7a86L86LCtgTtg4444B.1.1.4640.064801
ORF7a86L86LCtgTtg1442P.10.000221
ORF7a86L86LCtgTtg2937B.1.1770.000382
ORF7a86L86LCtgTtg1734AY.4.20.000369
ORF7a86L86LCtgTtg533B.1.10.000091
ORF7a86L86LCtgTtg1430AY.260.000396
ORF7a86L86LCtgTtg2930B.1.2580.00193
ORF7a86L86LCtgTtg428B.1.4270.000202
ORF7a86L86LCtgTtg1826AY.290.000284
ORF7a86L86LCtgTtg2324B.1.4290.000541
ORF7a86L86LCtgTtg222AY.330.000134
ORF7a86L86LCtgTtg1721AY.200.000661
ORF7a86L86LCtgTtg920AY.1190.000318
ORF7a86L86LCtgTtg1017AY.1000.00046
ORF7a86L86LCtgTtg1417AY.7.10.001578
ORF7a86L86LCtgTtg217B.1.1.5190.000079
ORF7a86L86LCtgTtg1517B.1.617.10.001934
ORF7a86L86LCtgTtg816AY.390.000198
ORF7a86L86LCtgTtg1315AY.420.000523
ORF7a86L86LCtgTtg1015AY.470.000311
ORF7a86L86LCtgTtg615B.1.3510.000178
ORF7a86L86LCtgTtg1414AY.300.00554
ORF7a86L86LCtgTtg1114AY.730.007319
ORF7a86L86LCtgTtg114B.1.1.4340.000349
ORF7a86L86LCtgTtg714B.1.5260.000165
ORF7a86L86LCtgTtg1212AY.4.40.00491
ORF7a86L86LCtgTtg811AY.460.000833
ORF7a86L86LCtgTtg710AY.50.000145
ORF7a86L86LCtgTtg210AY.60.000082
ORF7a86L86LCtgTtg59AY.230.000349
ORF7a86L86LCtgTtg89AY.750.000448
ORF7a86L86LCtgTtg19AY.9.20.000037
ORF7a86L86LCtgTtg18AY.1210.000135
ORF7a86L86LCtgTtg78AY.3.10.000597
ORF7a86L86LCtgTtg68AY.720.008163
ORF7a86L86LCtgTtg38B.1.5960.000261
ORF7a86L86LCtgTtg67AY.4.50.000645
ORF7a86L86LCtgTtg27P.1.140.000096
ORF7a86L86LCtgTtg57P.20.000933
ORF7a86L86LCtgTtg46AY.920.001149
ORF7a86L86LCtgTtg25AY.1170.000169
ORF7a86L86LCtgTtg45AY.1180.000251
ORF7a86L86LCtgTtg55AY.360.000741
ORF7a86L86LCtgTtg45AY.840.00175
ORF7a86L86LCtgTtg14AY.1160.000287
ORF7a86L86LCtgTtg24B.1.1600.000062
ORF7a86L86LCtgTtg44B.1.177.600.000874
ORF7a86L86LCtgTtg13AY.1060.000335
ORF7a86L86LCtgTtg23AY.130.000322
ORF7a86L86LCtgTtg33AY.270.000194
ORF7a86L86LCtgTtg13AY.450.000122
ORF7a86L86LCtgTtg23AY.75.10.000361
ORF7a86L86LCtgTtg13AY.980.000079
ORF7a86L86LCtgTtg33B.1.1.630.001157
ORF7a86L86LCtgTtg33B.1.4530.009709
ORF7a86L86LCtgTtg13B.1.6210.000089
ORF7a86L86LCtgTtg33Q.10.000379
ORF7a86L86LCtgTtg22AH.20.024096
ORF7a86L86LCtgTtg22AY.1110.000366
ORF7a86L86LCtgTtg12AY.1200.000037
ORF7a86L86LCtgTtg22AY.4.2.10.000298
ORF7a86L86LCtgTtg12AY.5.40.000277
ORF7a86L86LCtgTtg12AY.610.000105
ORF7a86L86LCtgTtg22AY.890.009804
ORF7a86L86LCtgTtg22B.1.1.1210.004854
ORF7a86L86LCtgTtg12B.1.1.2220.000204
ORF7a86L86LCtgTtg22B.1.1.3690.000892
ORF7a86L86LCtgTtg22B.1.160.160.001859
ORF7a86L86LCtgTtg22B.1.177.670.015267
ORF7a86L86LCtgTtg12B.1.2320.000537
ORF7a86L86LCtgTtg22B.1.2390.002442
ORF7a86L86LCtgTtg12B.1.2430.00007
ORF7a86L86LCtgTtg12B.1.258.170.000104
ORF7a86L86LCtgTtg22B.1.351.20.000605
ORF7a86L86LCtgTtg22B.1.36.310.003503
ORF7a86L86LCtgTtg12B.1.5250.000113
ORF7a86L86LCtgTtg12B.1.5750.000303
ORF7a86L86LCtgTtg22N.40.008511
ORF7a86L86LCtgTtg22W.40.002703
ORF7a86L86LCtgTtg11AY.100.00053
ORF7a86L86LCtgTtg11AY.1070.000466
ORF7a86L86LCtgTtg11AY.1130.000142
ORF7a86L86LCtgTtg11AY.1140.000231
ORF7a86L86LCtgTtg11AY.116.10.000311
ORF7a86L86LCtgTtg11AY.120.000316
ORF7a86L86LCtgTtg11AY.160.00038
ORF7a86L86LCtgTtg11AY.29.10.000221
ORF7a86L86LCtgTtg11AY.340.000097
ORF7a86L86LCtgTtg11AY.5.10.003759
ORF7a86L86LCtgTtg11AY.5.30.000337
ORF7a86L86LCtgTtg11AY.510.000909
ORF7a86L86LCtgTtg11AY.540.000095
ORF7a86L86LCtgTtg11AY.70.000196
ORF7a86L86LCtgTtg11AY.90.000068
ORF7a86L86LCtgTtg11B.1.1.100.001115
ORF7a86L86LCtgTtg11B.1.1.2200.001859
ORF7a86L86LCtgTtg11B.1.1.2410.00207
ORF7a86L86LCtgTtg11B.1.1.2570.009709
ORF7a86L86LCtgTtg11B.1.1.2910.000742
ORF7a86L86LCtgTtg11B.1.1.2940.001266
ORF7a86L86LCtgTtg11B.1.1.3060.000438
ORF7a86L86LCtgTtg11B.1.1.3840.02381
ORF7a86L86LCtgTtg11B.1.1.4060.006494
ORF7a86L86LCtgTtg11B.1.1280.000635
ORF7a86L86LCtgTtg11B.1.177.150.000631
ORF7a86L86LCtgTtg11B.1.177.330.001645
ORF7a86L86LCtgTtg11B.1.177.440.000519
ORF7a86L86LCtgTtg11B.1.1820.007246
ORF7a86L86LCtgTtg11B.1.351.50.0006
ORF7a86L86LCtgTtg11B.1.4160.001269
ORF7a86L86LCtgTtg11B.1.6250.002353
ORF7a86L86LCtgTtg11B.570.015152
ORF7a86L86LCtgTtg11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.