CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7a : CodonNum = 86 & Codon = Gtg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7a86L86VnonsynCtgGtg66650.98484827649-27651

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7a86L86VCtgGtg6566All0.000012
ORF7a86L86VCtgGtg1212AY.30.000119
ORF7a86L86VCtgGtg1010AY.750.00056
ORF7a86L86VCtgGtg78AY.40.000011
ORF7a86L86VCtgGtg66B.1.617.20.000023
ORF7a86L86VCtgGtg55B.1.1.70.000004
ORF7a86L86VCtgGtg44AY.420.000161
ORF7a86L86VCtgGtg33AY.3.10.000256
ORF7a86L86VCtgGtg22AY.1030.000012
ORF7a86L86VCtgGtg22AY.430.000009
ORF7a86L86VCtgGtg22AY.98.10.000097
ORF7a86L86VCtgGtg22B.1.1600.000062
ORF7a86L86VCtgGtg11AY.160.00038
ORF7a86L86VCtgGtg11AY.250.000006
ORF7a86L86VCtgGtg11AY.290.000016
ORF7a86L86VCtgGtg11AY.440.000006
ORF7a86L86VCtgGtg11AY.470.000031
ORF7a86L86VCtgGtg11B.1.1.2910.000742
ORF7a86L86VCtgGtg11B.1.3510.00003
ORF7a86L86VCtgGtg11B.1.36.10.00114
ORF7a86L86VCtgGtg11B.1.6370.000073
ORF7a86L86VCtgGtg11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.